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7b09290a3a
re: https://github.com/Unidata/netcdf-c/issues/2338 re: https://github.com/Unidata/netcdf-c/issues/2294 In issue https://github.com/Unidata/netcdf-c/issues/2338, Ed Hartnett suggested a better way to install filters to a user defined location -- for Automake, anyway. This PR implements that suggestion. It turns out to be more complicated than it appears, so there are fair number of changes; mostly to shell scripts. Most of the change is in plugins/Makefile.am. NOTE: this PR still does NOT address the use of HDF5_PLUGIN_PATH as the default; this turns out to be complex when dealing with NCZarr. So this will be addressed in a subsequent post 4.9.0 PR. ## Misc. Changes 1. Record the occurrences of incomplete codecs in libnczarr so that they can be included in _Codecs attribute correctly. This allows users to see what missing filters are referenced in the Zarr file. Primarily affects libnczarr/zfilter.[ch]. Also required creating a new no-effect filter: H5Zunknown.c. 2. Move the unknown filter test to a separate test file. 3. Incorporates PR https://github.com/Unidata/netcdf-c/pull/2343
250 lines
6.7 KiB
C
250 lines
6.7 KiB
C
#include "config.h"
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#include <stdlib.h>
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#include <string.h>
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#include <assert.h>
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#include <stdio.h>
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#include <sys/types.h>
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#include <netcdf_json.h>
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#include "netcdf_filter_build.h"
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#ifndef NOOP_INSTANCE
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#define NOOP_INSTANCE 0
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#endif
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#if NOOP_INSTANCE == 1
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const static int instance[1] = {1};
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#endif
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#if NOOP_INSTANCE == 0
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const static int instance[1] = {0};
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#endif
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/* use a temporary */
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#define H5Z_FILTER_NOOP 40000
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/* WARNING:
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Starting with HDF5 version 1.10.x, the plugin code MUST be
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careful when using the standard *malloc()*, *realloc()*, and
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*free()* function.
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In the event that the code is allocating, reallocating, for
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free'ing memory that either came from or will be exported to the
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calling HDF5 library, then one MUST use the corresponding HDF5
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functions *H5allocate_memory()*, *H5resize_memory()*,
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*H5free_memory()* [5] to avoid memory failures.
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Additionally, if your filter code leaks memory, then the HDF5 library
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will generate an error.
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*/
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#undef DEBUG
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extern void NC_h5filterspec_fix8(void* mem, int decode);
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static htri_t H5Z_noop_can_apply(hid_t dcpl_id, hid_t type_id, hid_t space_id);
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static size_t H5Z_filter_noop(unsigned int, size_t, const unsigned int cd_values[], size_t, size_t*, void**);
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static H5Z_class2_t H5Z_NOOP[1] = {{
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H5Z_CLASS_T_VERS, /* H5Z_class_t version */
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#if NOOP_INSTANCE == 0
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(H5Z_filter_t)(H5Z_FILTER_NOOP), /* Filter id number */
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#else
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(H5Z_filter_t)(H5Z_FILTER_NOOP+1), /* Filter id number */
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#endif
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1, /* encoder_present flag (set to true) */
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1, /* decoder_present flag (set to true) */
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#if NOOP_INSTANCE == 0
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"noop", /* Filter name for debugging */
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#else
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"noop1", /* Filter name for debugging */
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#endif
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(H5Z_can_apply_func_t)H5Z_noop_can_apply, /* The "can apply" callback */
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NULL, /* The "set local" callback */
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(H5Z_func_t)H5Z_filter_noop, /* The actual filter function */
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}};
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/* External Discovery Functions */
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DLLEXPORT
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H5PL_type_t
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H5PLget_plugin_type(void)
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{
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return H5PL_TYPE_FILTER;
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}
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DLLEXPORT
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const void*
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H5PLget_plugin_info(void)
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{
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return H5Z_NOOP;
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}
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/* Make this explicit */
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/*
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* The "can_apply" callback returns positive a valid combination, zero for an
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* invalid combination and negative for an error.
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*/
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static htri_t
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H5Z_noop_can_apply(hid_t dcpl_id, hid_t type_id, hid_t space_id)
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{
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return 1; /* Assume it can always apply */
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}
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static size_t
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H5Z_filter_noop(unsigned int flags, size_t cd_nelmts,
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const unsigned int cd_values[], size_t nbytes,
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size_t *buf_size, void **buf)
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{
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void* newbuf;
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size_t i;
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const char* direction = (flags & H5Z_FLAG_REVERSE) ? "decompress" : "compress";
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NC_UNUSED(instance);
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printf("direction=%s id=%lu cd_nelmts=%lu cd_values=",direction,(unsigned long)H5Z_NOOP[0].id,(unsigned long)cd_nelmts);
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for(i=0;i<cd_nelmts;i++)
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printf(" %u",cd_values[i]);
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printf("\n");
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fflush(stdout);
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if (flags & H5Z_FLAG_REVERSE) {
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/* Replace buffer */
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newbuf = H5allocate_memory(*buf_size,0);
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if(newbuf == NULL) abort();
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memcpy(newbuf,*buf,*buf_size);
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/* reclaim old buffer */
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H5free_memory(*buf);
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*buf = newbuf;
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} else {
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/* Replace buffer */
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newbuf = H5allocate_memory(*buf_size,0);
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if(newbuf == NULL) abort();
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memcpy(newbuf,*buf,*buf_size);
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/* reclaim old buffer */
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H5free_memory(*buf);
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*buf = newbuf;
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}
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return *buf_size;
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}
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/**************************************************/
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/* NCZarr Codec API */
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/* Codec Format
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{
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"id": "test",
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"p0": "<unsigned int>",
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"p1": "<unsigned int>",
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"p2": "<unsigned int>",
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...
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"pn": "<unsigned int>",
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}
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*/
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/* Forward */
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static int NCZ_noop_codec_to_hdf5(const char* codec, size_t* nparamsp, unsigned** paramsp);
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static int NCZ_noop_hdf5_to_codec(size_t nparams, const unsigned* params, char** codecp);
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/* Structure for NCZ_PLUGIN_CODEC */
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static NCZ_codec_t NCZ_noop_codec = {/* NCZ_codec_t codec fields */
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NCZ_CODEC_CLASS_VER, /* Struct version number */
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NCZ_CODEC_HDF5, /* Struct sort */
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#if NOOP_INSTANCE == 0
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"noop", /* Standard name/id of the codec */
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H5Z_FILTER_NOOP, /* HDF5 alias for noop */
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#else
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"noop1", /* Standard name/id of the codec */
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H5Z_FILTER_NOOP+1, /* HDF5 alias for noop */
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#endif
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NULL, /*NCZ_noop_codec_initialize*/
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NULL, /*NCZ_noop_codec_finalize*/
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NCZ_noop_codec_to_hdf5,
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NCZ_noop_hdf5_to_codec,
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NULL, /*NCZ_noop_modify_parameters*/
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};
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/* External Export API */
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DLLEXPORT
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const void*
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NCZ_get_codec_info(void)
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{
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return (void*)&NCZ_noop_codec;
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}
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/* NCZarr Interface Functions */
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static int
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NCZ_noop_codec_to_hdf5(const char* codec_json, size_t* nparamsp, unsigned** paramsp)
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{
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int stat = NC_NOERR;
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NCjson* jcodec = NULL;
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NCjson* jtmp = NULL;
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int i,nparams = 0;
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unsigned* params = NULL;
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char field[1024];
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/* parse the JSON */
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if(NCJparse(codec_json,0,&jcodec))
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{stat = NC_EFILTER; goto done;}
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if(NCJsort(jcodec) != NCJ_DICT) {stat = NC_EPLUGIN; goto done;}
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/* Verify the codec ID */
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if(NCJdictget(jcodec,"id",&jtmp))
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{stat = NC_EFILTER; goto done;}
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if(jtmp == NULL || !NCJisatomic(jtmp)) {stat = NC_EINVAL; goto done;}
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if(strcmp(NCJstring(jtmp),NCZ_noop_codec.codecid)!=0) {stat = NC_EINVAL; goto done;}
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nparams = (NCJlength(jcodec) - 1) / 2; /* -1 for id each param is key+value */
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if((params = (unsigned*)calloc(nparams,sizeof(unsigned)))== NULL)
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{stat = NC_ENOMEM; goto done;}
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/* This filter has an arbitrary number of parameters named p0...pn */
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for(i=0;i<nparams;i++) {
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struct NCJconst jc;
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snprintf(field,sizeof(field),"p%d",i);
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if(NCJdictget(jcodec,field,&jtmp))
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{stat = NC_EFILTER; goto done;}
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if(NCJcvt(jtmp,NCJ_INT,&jc))
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{stat = NC_EFILTER; goto done;}
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if(jc.ival < 0 || jc.ival > NC_MAX_UINT) {stat = NC_EINVAL; goto done;}
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params[i] = (unsigned)jc.ival;
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}
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if(nparamsp) *nparamsp = nparams;
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if(paramsp) {*paramsp = params; params = NULL;}
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done:
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if(params) free(params);
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NCJreclaim(jcodec);
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return stat;
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}
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static int
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NCZ_noop_hdf5_to_codec(size_t nparams, const unsigned* params, char** codecp)
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{
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int i,stat = NC_NOERR;
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char json[8192];
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char value[1024];
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if(nparams != 0 && params == NULL)
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{stat = NC_EINVAL; goto done;}
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snprintf(json,sizeof(json),"{\"id\": \"%s\"",NCZ_noop_codec.codecid);
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for(i=0;i<nparams;i++) {
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snprintf(value,sizeof(value),", \"p%d\": \"%u\"",i,params[i]);
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strlcat(json,value,sizeof(json));
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}
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strlcat(json,"}",sizeof(json));
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if(codecp) {
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if((*codecp = strdup(json))==NULL) {stat = NC_ENOMEM; goto done;}
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}
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done:
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return stat;
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}
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