mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-11-27 07:30:33 +08:00
b02703aa24
After a long discussion, I implemented the rules at the end of that issue.
They are documented in nccopy.1.
Additionally, I added a new, per-variable, -c flag that allows
for the direct setting of the chunking parameters for a variable.
The form is
-c var:c1,c2,...ck
where var is the name of the variable (possibly a fully qualified name)
and the ci are the chunksizes for that variable. It must be the case
that the rank of the variable is k. If the new form is used as well
as the old form, then the new form overrides the old form for the
specified variable. Note that multiple occurrences of the new form
-c flag may be specified.
Misc. Other fixes
1. Added -M <size> option to nccopy to specify the minimum
allowable chunksize.
2. Removed the unused variables from bigmeta.c
(Issue https://github.com/Unidata/netcdf-c/issues/1079)
3. Fixed failure of nc_test4/tst_filter.sh by using the new -M
flag (#1) to allow filter test on a small chunk size.
219 lines
4.5 KiB
Bash
219 lines
4.5 KiB
Bash
#!/bin/bash
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#NB=1
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#DB=1
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#X=-x
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#FAST=1
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#PROF=1
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HDF5=1
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DAP=1
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#SZIP=1
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#HDF4=1
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#PNETCDF=1
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#PAR4=1
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#TESTSERVERS="localhost:8080,149.165.169.123:8080"
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if test $# != 0 ; then
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cmds=$@
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fi
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if test "x$PNETCDF" = x1 -o "x$PAR4" = x1 ; then
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MPIO=1
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fi
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CFLAGS=""
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#CFLAGS="-Wall -Wno-unused-but-set-variable -Wno-unused-variable -Wno-unused-parameter -Wconversion ${CFLAGS}"
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#CFLAGS="-Wall -Wno-unused-but-set-variable -Wno-unused-variable -Wno-unused-parameter -Wno-char-subscripts -Wno-pointer-sign -Wno-format ${CFLAGS}"
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CFLAGS="-Wall -Wno-unused-parameter -Wno-char-subscripts -Wno-pointer-sign ${CFLAGS}"
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#CFLAGS="-Wall ${CFLAGS}"
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#CFLAGS="-Wconversion"
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stddir="/usr/local"
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PREFIX=/usr/local
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if test "x${cmds}" = x ; then
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cmds=""
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else
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for f in $cmds ; do
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if test "x$f" = "xdistcheck" ; then
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PREFIX=/tmp/$HOST
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fi
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done
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fi
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# HDF4=>HDF5
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if test "x$HDF4" = x1 ; then
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HDF5=1
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fi
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# !HDF5=>!SZIP
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if test "x$HDF5" != x1 ; then
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SZIP=0
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fi
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CC=gcc
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MALLOC_CHECK=""
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CPPFLAGS=""
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LDFLAGS=""
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CFLAGS="-g -O0 $CFLAGS -Wno-undefined"
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MAKE=make
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IGNORE="test 0 = 1"
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if test "x$HDF5" = "x1" ; then
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CPPFLAGS="-I${stddir}/include $CPPFLAGS"
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LDFLAGS="-L${stddir}/lib -lhdf5_hl -lhdf5 -lz $LDFLAGS"
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LD_LIBRARY_PATH="${stddir}/lib:$LD_LIBRARY_PATH"
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fi
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if test "x$HDF4" = "x1" ; then
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LDFLAGS="$LDFLAGS -lmfhdf -ldf -ljpeg"
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fi
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if test "x$SZIP" = "x1" ; then
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LDFLAGS="$LDFLAGS -lsz -laec"
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fi
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export PKG_CONFIG_PATH=/usr/lib/pkgconfig
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if test "x$DAP" = "x1" ; then
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if curl-config --version >/dev/null ; then
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TMP=`curl-config --cflags`
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CPPFLAGS="$TMP $CPPFLAGS"
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TMP=`curl-config --libs`
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LDFLAGS="$TMP $LDFLAGS"
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TMP=`curl-config --prefix`
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LD_LIBRARY_PATH="$TMP/lib:$LD_LIBRARY_PATH"
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else
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LDFLAGS="${LDFLAGS} -lcurl"
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fi
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fi
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CXXFLAGS="$CPPFLAGS $CXXFLAGS"
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FLAGS="--prefix ${PREFIX}"
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#FLAGS="$FLAGS --disable-cxx"
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#FLAGS="$FLAGS --disable-examples"
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#FLAGS="$FLAGS --disable-utilities"
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#FLAGS="$FLAGS --enable-cxx-4"
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#FLAGS="$FLAGS --enable-dap-long-tests"
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#FLAGS="$FLAGS --enable-ffio"
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#FLAGS="$FLAGS --enable-benchmarks"
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FLAGS="$FLAGS --enable-extreme-numbers"
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#FLAGS="$FLAGS --enable-large-file-tests"
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#FLAGS="$FLAGS --disable-testsets"
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#FLAGS="$FLAGS --disable-dap-remote-tests"
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#FLAGS="$FLAGS --enable-dap-auth-tests" -- requires a new remotetest server
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#FLAGS="$FLAGS --enable-doxygen"
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#FLAGS="$FLAGS --enable-internal-docs"
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FLAGS="$FLAGS --enable-logging"
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FLAGS="$FLAGS --disable-diskless"
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#FLAGS="$FLAGS --enable-mmap"
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#FLAGS="$FLAGS --with-udunits"
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#FLAGS="$FLAGS --with-libcf"
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#FLAGS="$FLAGS --enable-jna"
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#FLAGS="$FLAGS --disable-properties-attribute"
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#FLAGS="$FLAGS --disable-silent-rules"
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#FLAGS="$FLAGS --disable-filter-testing"
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#FLAGS="$FLAGS --enable-metadata-perf"
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if test "x$TESTSERVERS" != x ; then
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FLAGS="$FLAGS --with-testservers=$TESTSERVERS"
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fi
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if test "x$PAR4" != x1 ; then
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FLAGS="$FLAGS --disable-parallel4"
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fi
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if test "x${DB}" = x1 ; then
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FLAGS="$FLAGS --disable-shared --enable-static"
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#FLAGS="$FLAGS --enable-static"
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else
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FLAGS="$FLAGS --enable-shared"
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fi
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#TMP=
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#rm -f ./test_mpi.tmp
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#if test -f $stddir/lib/libhdf5.a ; then
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# nm $stddir/lib/libhdf5.a | grep mpich_mpi_float$ >./test_mpi.tmp
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#else
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# if test -f $stddir/lib/libhdf5.so ; then
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# nm $stddir/lib/libhdf5.so | grep mpich_mpi_float$ >./test_mpi.tmp
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# fi
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#fi
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#if test -s ./test_mpi.tmp ; then
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# PAR=1
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#fi
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#rm -f ./test_mpi.tmp
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if test "x${PAR}" != x ; then
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FLAGS="$FLAGS --enable-parallel"
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fi
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if test "x$HDF5" = "x" ; then
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FLAGS="$FLAGS --disable-netcdf-4"
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fi
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if test "x$HDF4" = x1 ; then
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FLAGS="$FLAGS --enable-hdf4 --enable-hdf4-file-tests"
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fi
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if test "x$DAP" = "x" ; then
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FLAGS="$FLAGS --disable-dap"
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fi
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if test "x$MPIO" = x1 ; then
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# MPIDIR=/usr/lib64/mpich
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MPIDIR=/usr/lib64/openmpi
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PATH="${PATH}:${MPIDIR}/bin"
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CC="${MPIDIR}/bin/mpicc"
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CPPFLAGS="-I${MPIDIR}/include"
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LDFLAGS="$LDFLAGS -L${MPIDIR}"
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LDLIBS="-lmpich"
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FLAGS="$FLAGS --enable-parallel-tests"
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fi
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if test "x$PNETCDF" = x1 ; then
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FLAGS="$FLAGS --enable-pnetcdf"
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fi
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if test "x${PROF}" = x1 ; then
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CFLAGS="${CFLAGS} -pg"
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LDFLAGS="${LDFLAGS} -pg"
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fi
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#FLAGS="${FLAGS} --enable-stdio"
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export PATH
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export CC
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export CPPFLAGS
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export CFLAGS
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export LDFLAGS
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export LD_LIBRARY_PATH
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export MALLOC_CHECK
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export CXXFLAGS
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DISTCHECK_CONFIGURE_FLAGS="$FLAGS"
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export DISTCHECK_CONFIGURE_FLAGS
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if test "x$NB" != x -o "x$FAST" = x ; then
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${MAKE} maintainer-clean >/dev/null 2>&1
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fi
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if test -z "$NB" ; then
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if autoreconf -i --force ; then ok=1; else exit ; fi
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fi
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if test -z "$FAST" ; then
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if test -f Makefile ; then ${MAKE} distclean >/dev/null 2>&1 ; fi
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fi
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sh $X ./configure ${FLAGS}
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for c in $cmds; do
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printenv LD_LIBRARY_PATH
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${MAKE} ${FORCE} $c
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done
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exit 0
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