mirror of
https://github.com/Unidata/netcdf-c.git
synced 2024-11-21 03:13:42 +08:00
3ffe7be446
re: Discussion https://github.com/Unidata/netcdf-c/discussions/2214 The primary change is to support so-called "standard filters". A standard filter is one that is defined by the following netcdf-c API: ```` int nc_def_var_XXX(int ncid, int varid, size_t nparams, unsigned* params); int nc_inq_var_XXXX(int ncid, int varid, int* usefilterp, unsigned* params); ```` So for example, zstandard would be a standard filter by defining the functions *nc_def_var_zstandard* and *nc_inq_var_zstandard*. In order to define these functions, we need a new dispatch function: ```` int nc_inq_filter_avail(int ncid, unsigned filterid); ```` This function, combined with the existing filter API can be used to implement arbitrary standard filters using a simple code pattern. Note that I would have preferred that this function return a list of all available filters, but HDF5 does not support that functionality. So this PR implements the dispatch function and implements the following standard functions: + bzip2 + zstandard + blosc Specific test cases are also provided for HDF5 and NCZarr. Over time, other specific standard filters will be defined. ## Primary Changes * Add nc_inq_filter_avail() to netcdf-c API. * Add standard filter implementations to test use of *nc_inq_filter_avail*. * Bump the dispatch table version number and add to all the relevant dispatch tables (libsrc, libsrcp, etc). * Create a program to invoke nc_inq_filter_avail so that it is accessible to shell scripts. * Cleanup szip support to properly support szip when HDF5 is disabled. This involves detecting libsz separately from testing if HDF5 supports szip. * Integrate shuffle and fletcher32 into the existing filter API. This means that, for example, nc_def_var_fletcher32 is now a wrapper around nc_def_var_filter. * Extend the Codec defaulting to allow multiple default shared libraries. ## Misc. Changes * Modify configure.ac/CMakeLists.txt to look for the relevant libraries implementing standard filters. * Modify libnetcdf.settings to list available standard filters (including deflate and szip). * Add CMake test modules to locate libbz2 and libzstd. * Cleanup the HDF5 memory manager function use in the plugins. * remove unused file include//ncfilter.h * remove tests for the HDF5 memory operations e.g. H5allocate_memory. * Add flag to ncdump to force use of _Filter instead of _Deflate or _Shuffle or _Fletcher32. Used for testing.
197 lines
3.6 KiB
C
Executable File
197 lines
3.6 KiB
C
Executable File
/*********************************************************************
|
|
* Copyright 1993, UCAR/Unidata
|
|
* See netcdf/COPYRIGHT file for copying and redistribution conditions.
|
|
* Derived from poco library from Boost Software: see nccpoco/LICENSE file.
|
|
*********************************************************************/
|
|
|
|
#include "config.h"
|
|
#include <stdlib.h>
|
|
#include <stdio.h>
|
|
#include <string.h>
|
|
#ifdef HAVE_DLFCN_H
|
|
#include <dlfcn.h>
|
|
#endif
|
|
#ifdef USE_MUTEX
|
|
#include <pthread.h>
|
|
#endif
|
|
|
|
#include "netcdf.h"
|
|
#include "ncpoco.h"
|
|
#include "ncpathmgr.h"
|
|
|
|
#undef DEBUG
|
|
|
|
/* Note: cygwin is missing RTLD_LOCAL, set it to 0 */
|
|
#if !defined(RTLD_LOCAL)
|
|
#define RTLD_LOCAL 0
|
|
#endif
|
|
|
|
#if !defined(RTLD_GLOBAL)
|
|
#define RTLD_GLOBAL 0
|
|
#endif
|
|
|
|
#if !defined(RTLD_LAZY)
|
|
#define RTLD_LAZY 1
|
|
#endif
|
|
|
|
#if !defined(RTLD_NOW)
|
|
#define RTLD_NOW 2
|
|
#endif
|
|
|
|
#ifdef USE_MUTEX
|
|
static pthread_mutex_t mutex;
|
|
#endif
|
|
|
|
static void
|
|
ncperr(const char* fcn, NCPSharedLib* lib)
|
|
{
|
|
const char* msg = dlerror();
|
|
lib->err.msg[0] = '\0';
|
|
if(msg != NULL) {
|
|
strlcat(lib->err.msg,fcn,sizeof(lib->err.msg));
|
|
strlcat(lib->err.msg,": ",sizeof(lib->err.msg));
|
|
strlcat(lib->err.msg,msg,sizeof(lib->err.msg));
|
|
#ifdef DEBUG
|
|
fprintf(stderr,">>> %s\n",lib->err.msg);
|
|
#endif
|
|
}
|
|
}
|
|
|
|
int
|
|
ncp_unix_initialize(void)
|
|
{
|
|
int ret = 1;
|
|
#ifdef USE_MUTEX
|
|
pthread_mutexattr_t attr;
|
|
pthread_mutexattr_init(&attr);
|
|
pthread_mutexattr_settype(&attr, PTHREAD_MUTEX_NORMAL);
|
|
if(pthread_mutex_init(&mutex, &attr)) {
|
|
fprintf(stderr,"cp_unix: Cannot create mutext\n");
|
|
ret = 1;
|
|
}
|
|
pthread_mutexattr_destroy(&attr);
|
|
#endif
|
|
return ret;
|
|
}
|
|
|
|
int
|
|
ncp_unix_finalize(void)
|
|
{
|
|
#ifdef USE_MUTEX
|
|
pthread_mutex_destroy(&mutex);
|
|
#endif
|
|
return 1;
|
|
}
|
|
|
|
/**************************************************/
|
|
|
|
#ifdef USE_MUTEX
|
|
static void lock(void) {pthread_mutex_lock(&mutex);}
|
|
#else
|
|
#define lock()
|
|
#endif
|
|
|
|
#ifdef USE_MUTEX
|
|
static void unlock(void) {pthread_mutex_unlock(&mutex);}
|
|
#else
|
|
#define unlock()
|
|
#endif
|
|
|
|
/**************************************************/
|
|
|
|
static int
|
|
init(NCPSharedLib* lib)
|
|
{
|
|
int ret = NC_NOERR;
|
|
return ret;
|
|
}
|
|
|
|
static int
|
|
reclaim(NCPSharedLib* lib)
|
|
{
|
|
int ret = NC_NOERR;
|
|
return ret;
|
|
}
|
|
|
|
static int
|
|
load(NCPSharedLib* lib , const char* path0, int flags)
|
|
{
|
|
int ret = NC_NOERR;
|
|
int realflags = RTLD_LAZY; /* versus RTLD_NOW which does not appear to work */
|
|
char* path = NULL;
|
|
|
|
if((path = NCpathcvt(path0))==NULL) {ret = NC_ENOMEM; goto done;}
|
|
|
|
lock();
|
|
if(lib->state.handle != NULL)
|
|
{ret = NC_EEXIST; goto ldone;}
|
|
lib->path = nulldup(path);
|
|
lib->flags = flags;
|
|
if(flags & NCP_LOCAL)
|
|
realflags |= RTLD_LOCAL;
|
|
else
|
|
realflags |= RTLD_GLOBAL;
|
|
lib->state.flags = realflags;
|
|
lib->state.handle = dlopen(lib->path, lib->state.flags);
|
|
if(lib->state.handle == NULL) {
|
|
ncperr("dlopen",lib);
|
|
ret = NC_ENOTFOUND;
|
|
goto ldone;
|
|
}
|
|
ldone:
|
|
unlock();
|
|
done:
|
|
nullfree(path);
|
|
return ret;
|
|
}
|
|
|
|
static int
|
|
unload(NCPSharedLib* lib)
|
|
{
|
|
int ret = NC_NOERR;
|
|
lock();
|
|
if(lib->state.handle != NULL) {
|
|
dlclose(lib->state.handle);
|
|
lib->state.handle = NULL;
|
|
}
|
|
unlock();
|
|
return ret;
|
|
}
|
|
|
|
static int
|
|
isLoaded(NCPSharedLib* lib)
|
|
{
|
|
return lib->state.handle != NULL;
|
|
}
|
|
|
|
static void*
|
|
getsymbol(NCPSharedLib* lib, const char* name)
|
|
{
|
|
void* result = NULL;
|
|
lock();
|
|
if(lib->state.handle != NULL) {
|
|
result = dlsym(lib->state.handle, name);
|
|
if(result == NULL) {
|
|
ncperr("dlsym",lib);
|
|
}
|
|
}
|
|
unlock();
|
|
return result;
|
|
}
|
|
|
|
static const char*
|
|
getpath(NCPSharedLib* lib)
|
|
{
|
|
return lib->path;
|
|
}
|
|
|
|
struct NCPAPI ncp_unix_api = {
|
|
init,
|
|
reclaim,
|
|
load,
|
|
unload,
|
|
isLoaded,
|
|
getsymbol,
|
|
getpath,
|
|
};
|