/* This is part of the netCDF package. Copyright 2018 University Corporation for Atmospheric Research/Unidata See COPYRIGHT file for conditions of use. See www.unidata.ucar.edu for more info. Test netcdf-4 dimensions inheritance, and dims with and without coordinate variables. Ed Hartnett */ #include #include #include "err_macros.h" #define NDIM1 1 #define NDIM2 2 #define DATALEN2 2 #define VAR_NAME "var" #define DIM_NAME1 "y" #define DIM_NAME2 "x" #define NY 3 #define NX 3 #define DIM_LEN 2 #define FILE_NAME "tst_dims3.nc" int main(int argc, char **argv) { printf("\n*** Testing netcdf-4 dimensions even more.\n"); printf("*** testing netcdf-4 dimension inheritance..."); { #define RANK_time 1 #define GRP_NAME "G" #define GRP2_NAME "G2" #define TIME_NAME "time" #define VAR2_NAME "z" #define TIME_RANK 1 #define NUM_TIMES 2 #define LEV_NAME "level" #define VRT_NAME "vert_number" #define LEV_NUM 3 #define LEV_RANK 1 #define VRT_RANK 1 #define VAR2_RANK 2 #define NUM_VRT 3 int ncid, grpid; int time_dim, time_dim_in; int time_var, z_var; size_t len; int time_data[NUM_TIMES] = {1, 2} ; size_t time_startset[TIME_RANK] = {0} ; size_t time_countset[TIME_RANK] = {NUM_TIMES} ; /* Create file with unlimited dim and associated coordinate * variable in root group, another variable that uses unlimited * dim in subgroup. */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; if (nc_def_grp(ncid, GRP_NAME, &grpid)) ERR; if (nc_def_dim(ncid, TIME_NAME, NC_UNLIMITED, &time_dim)) ERR; if (nc_def_var(ncid, TIME_NAME, NC_INT, TIME_RANK, &time_dim, &time_var)) ERR; if (nc_def_var(grpid, VAR2_NAME, NC_INT, TIME_RANK, &time_dim, &z_var)) ERR; if (nc_enddef(ncid)) ERR; /* Assign data to time variable, creating two times */ if (nc_put_vara(ncid, time_dim, time_startset, time_countset, time_data)) ERR; /* Check the dim len from the root group */ if (nc_inq_dimlen(ncid, time_dim, &len)) ERR; if (len != NUM_TIMES) ERR; /* Check the dim len from the sub group */ if (nc_inq_dimlen(grpid, time_dim, &len)) ERR; if (len != NUM_TIMES) ERR; if (nc_close(ncid)) ERR; /* Now check how many times there are from the subgroup */ if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_ncid(ncid, GRP_NAME, &grpid)) ERR; if (nc_inq_dimid(ncid, TIME_NAME, &time_dim)) ERR; /* Check the dim len from the root group */ if (nc_inq_dimlen(ncid, time_dim, &len)) ERR; if (len != NUM_TIMES) ERR; /* Check the dim len from the sub group */ if (nc_inq_dimlen(grpid, time_dim, &len)) ERR; if (len != NUM_TIMES) ERR; /* Find the dimension by name. */ if (nc_inq_dimid(grpid, TIME_NAME, &time_dim_in)) ERR; if (time_dim_in != time_dim) ERR; if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** testing a scalar coordinate dimension..."); { int ncid, dimid, varid; float data = 42.5; /* Create a scalar coordinate dimension. The only reason that * the user can ever possibly have for doing this is just * because they like to make life difficult for poor, poor * netCDF programmers, trapped in this horrible place, in a * Rocky Mountain valley, drenched in sunlight, with a stream * quietly gurgling, deer feeding on the grasses, and all those * damn birds chirping! */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR_RET; if (nc_def_dim(ncid, "scalar", 0, &dimid)) ERR_RET; if (nc_def_var(ncid, "scalar", NC_FLOAT, 0, &dimid, &varid)) ERR_RET; if (nc_put_var_float(ncid, varid, &data)) ERR_RET; if (nc_close(ncid)) ERR_RET; } SUMMARIZE_ERR; printf("*** testing defining dimensions and coord variables in different orders in root group..."); { int ncid, grpid, grp2id; int time_dimid, lev_dimid, g2lev_dimid, g2vrt_dimid; int time_dimid_in, lev_dimid_in, g2lev_dimid_in, g2vrt_dimid_in; int time_varid, lev_varid, gvar2_varid, g2lev_varid, g2vrt_varid; int var2_dims[VAR2_RANK]; /* Create test for fix of bug that resulted in two dimensions * having the same dimid, which violates the Pauli exclusion * principle for dimensions. */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR_RET; if (nc_def_grp(ncid, GRP_NAME, &grpid)) ERR; if (nc_def_dim(ncid, TIME_NAME, NC_UNLIMITED, &time_dimid)) ERR_RET; if (nc_def_dim(ncid, LEV_NAME, LEV_NUM, &lev_dimid)) ERR_RET; var2_dims[0] = time_dimid; var2_dims[1] = lev_dimid; if (nc_def_var(grpid, VAR2_NAME, NC_FLOAT, VAR2_RANK, var2_dims, &gvar2_varid)) ERR; /* define coord vars in opposite order of coord dims */ if (nc_def_var(ncid, LEV_NAME, NC_FLOAT, LEV_RANK, &lev_dimid, &lev_varid)) ERR; if (nc_def_var(ncid, TIME_NAME, NC_FLOAT, TIME_RANK, &time_dimid, &time_varid)) ERR; if (nc_def_grp(ncid, GRP2_NAME, &grp2id)) ERR; if (nc_def_dim(grp2id, LEV_NAME, LEV_NUM, &g2lev_dimid)) ERR_RET; if (nc_def_dim(grp2id, VRT_NAME, NUM_VRT, &g2vrt_dimid)) ERR_RET; if (nc_def_var(grp2id, LEV_NAME, NC_FLOAT, LEV_RANK, &g2lev_dimid, &g2lev_varid)) ERR; if (nc_def_var(grp2id, VRT_NAME, NC_FLOAT, VRT_RANK, &g2vrt_dimid, &g2vrt_varid)) ERR; if (nc_close(ncid)) ERR; /* Re-open, in which dimids may get reassigned */ if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_dimid(ncid, TIME_NAME, &time_dimid_in)) ERR; if (nc_inq_dimid(ncid, LEV_NAME, &lev_dimid_in)) ERR; if (nc_inq_ncid(ncid, GRP2_NAME, &grp2id)) ERR; if (nc_inq_dimid(grp2id, LEV_NAME, &g2lev_dimid_in)) ERR; if (nc_inq_dimid(grp2id, VRT_NAME, &g2vrt_dimid_in)) ERR; /* dimids must still all be distinct */ if (time_dimid_in == lev_dimid_in || time_dimid_in == g2lev_dimid_in || time_dimid_in == g2vrt_dimid_in || lev_dimid_in == g2lev_dimid_in || lev_dimid_in == g2vrt_dimid_in || g2lev_dimid_in == g2vrt_dimid_in) ERR; if (nc_close(ncid)) ERR_RET; } SUMMARIZE_ERR; printf("*** testing defining dimensions and coord variables in different orders in subgroup..."); { int ncid, grpid, grp2id; int time_dimid, lev_dimid, g2lev_dimid, g2vrt_dimid; int time_dimid_in, lev_dimid_in, g2lev_dimid_in, g2vrt_dimid_in; int time_varid, lev_varid, gvar2_varid, g2lev_varid, g2vrt_varid; int var2_dims[VAR2_RANK]; /* Create test for fix of bug inside a subgroup that results in two dimensions * having the same dimid. */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR_RET; if (nc_def_grp(ncid, GRP_NAME, &grpid)) ERR; if (nc_def_dim(ncid, TIME_NAME, NC_UNLIMITED, &time_dimid)) ERR_RET; if (nc_def_dim(ncid, LEV_NAME, LEV_NUM, &lev_dimid)) ERR_RET; var2_dims[0] = time_dimid; var2_dims[1] = lev_dimid; if (nc_def_var(grpid, VAR2_NAME, NC_FLOAT, VAR2_RANK, var2_dims, &gvar2_varid)) ERR; if (nc_def_var(ncid, TIME_NAME, NC_FLOAT, TIME_RANK, &time_dimid, &time_varid)) ERR; if (nc_def_var(ncid, LEV_NAME, NC_FLOAT, LEV_RANK, &lev_dimid, &lev_varid)) ERR; if (nc_def_grp(ncid, GRP2_NAME, &grp2id)) ERR; if (nc_def_dim(grp2id, LEV_NAME, LEV_NUM, &g2lev_dimid)) ERR_RET; if (nc_def_dim(grp2id, VRT_NAME, NUM_VRT, &g2vrt_dimid)) ERR_RET; /* define coord vars in opposite order of coord dims */ if (nc_def_var(grp2id, VRT_NAME, NC_FLOAT, VRT_RANK, &g2vrt_dimid, &g2vrt_varid)) ERR; if (nc_def_var(grp2id, LEV_NAME, NC_FLOAT, LEV_RANK, &g2lev_dimid, &g2lev_varid)) ERR; if (nc_close(ncid)) ERR; /* Re-open, in which dimids may get reassigned */ if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_dimid(ncid, TIME_NAME, &time_dimid_in)) ERR; if (nc_inq_dimid(ncid, LEV_NAME, &lev_dimid_in)) ERR; if (nc_inq_ncid(ncid, GRP2_NAME, &grp2id)) ERR; if (nc_inq_dimid(grp2id, LEV_NAME, &g2lev_dimid_in)) ERR; if (nc_inq_dimid(grp2id, VRT_NAME, &g2vrt_dimid_in)) ERR; /* dimids must still all be distinct */ if (time_dimid_in == lev_dimid_in || time_dimid_in == g2lev_dimid_in || time_dimid_in == g2vrt_dimid_in || lev_dimid_in == g2lev_dimid_in || lev_dimid_in == g2vrt_dimid_in || g2lev_dimid_in == g2vrt_dimid_in) ERR; if (nc_close(ncid)) ERR_RET; } SUMMARIZE_ERR; printf("*** testing var and unlim dim with same name, but not related..."); { /* This test code based on test code from Jeff Whitaker. See * https://github.com/Unidata/netcdf4-python/issues/975 and * https://github.com/Unidata/netcdf-c/issues/1496. */ int ncid, timesubset_id, time_id, timevar_id, dummyvar_id; size_t start[1] = {0}; size_t count[1] = {1}; double data[1] = {TEST_VAL_42}; size_t len; double data_in; if (nc_create(FILE_NAME, NC_CLOBBER | NC_NETCDF4, &ncid)) ERR; if (nc_def_dim(ncid, "time", NC_UNLIMITED, &time_id)) ERR; if (nc_def_dim(ncid, "time_subset", 50, ×ubset_id)) ERR; /* Define vars. */ if (nc_def_var(ncid, "time", NC_DOUBLE, 1, ×ubset_id, &timevar_id)) ERR; if (nc_def_var(ncid, "dummy", NC_DOUBLE, 1, &time_id, &dummyvar_id)) ERR; if (nc_enddef(ncid)) ERR; /* Write some data. */ if (nc_put_vara(ncid, dummyvar_id, start, count, data)) ERR; /* Close the file. */ if (nc_close(ncid)) ERR; /* Reopen file and check. */ if (nc_open(FILE_NAME, NC_WRITE, &ncid)) ERR; if (nc_inq_dim(ncid, 0, NULL, &len)) ERR; if (len != 1) ERR; if (nc_get_vara_double(ncid, 1, start, count, &data_in)) ERR; if (data_in != TEST_VAL_42) ERR; if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** testing very simple case writing data with 2 unlim dims..."); { /* This test code based on test code from Jeff Whitaker. See * https://github.com/Unidata/netcdf4-python/issues/1413. This * is a simplified version. */ int varid1, varid, ncid; int dimids[NDIM2]; size_t start[1] = {0}; size_t count[1] = {NY}; int ydata[NY]; int i; size_t len_in; /* Fill Y data array. */ for (i = 0; i < NY; ++i) ydata[i] = i; /* Create a file. */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; /* Define two unlimited dims. */ if (nc_def_dim(ncid, DIM_NAME1, NC_UNLIMITED, &dimids[0])) ERR; if (nc_def_dim(ncid, DIM_NAME2, NC_UNLIMITED, &dimids[1])) ERR; /* Define coord var for first dim Y. */ if (nc_def_var(ncid, DIM_NAME1, NC_INT, 1, &dimids[0], &varid1)) ERR; /* Define a data var with dims Y,X. */ if (nc_def_var(ncid, VAR_NAME, NC_INT, NDIM2, dimids, &varid)) ERR; /* Write data to coordinate var to extend Y. */ if (nc_put_vara_int(ncid, varid1, start, count, ydata)) ERR; if (nc_close(ncid)) ERR; /* Reopen the file and check. */ if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_dimlen(ncid, 0, &len_in)) ERR; if (len_in != NY) ERR; if (nc_inq_dimlen(ncid, 1, &len_in)) ERR; if (len_in != 0) ERR; /* Read and check each value of the coordinate var. */ for (size_t y = 0; y < NY; y++) { size_t index = y; int data_in; if (nc_get_var1_int(ncid, varid1, &index, &data_in)) ERR; if (data_in != y) ERR; } if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** testing simple case writing data with 2 unlim dims..."); { /* This test code based on test code from Jeff Whitaker. See * https://github.com/Unidata/netcdf4-python/issues/1413. This * is a simplified version. */ int varid1, varid, ncid; int dimids[NDIM2]; size_t start[1] = {0}; size_t count[1] = {NY}; size_t start2[NDIM2] = {0, 2}; size_t count2[NDIM2] = {1, 1}; int ydata[NY]; int data = TEST_VAL_42; int x, i; /* Fill Y data array. */ for (i = 0; i < NY; ++i) ydata[i] = i; /* Create a file. */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; /* Define two unlimited dims. */ if (nc_def_dim(ncid, DIM_NAME1, NC_UNLIMITED, &dimids[0])) ERR; if (nc_def_dim(ncid, DIM_NAME2, NC_UNLIMITED, &dimids[1])) ERR; /* Define coord var for first dim Y. */ if (nc_def_var(ncid, DIM_NAME1, NC_INT, 1, &dimids[0], &varid1)) ERR; /* Define a data var with dims Y,X. */ if (nc_def_var(ncid, VAR_NAME, NC_INT, NDIM2, dimids, &varid)) ERR; /* Write data to coordinate var to extend Y. */ if (nc_put_vara_int(ncid, varid1, start, count, ydata)) ERR; if (nc_sync(ncid)) ERR; /* write a single data point to the 2d variable */ if (nc_put_vara_int(ncid, varid, start2, count2, &data)) ERR; if (nc_close(ncid)) ERR; /* Reopen the file and check. */ if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; /* Read and check each value with nc_get_var1_int(). */ for (size_t x = 0; x < NX; x++) { for (size_t y = 0; y < NY; y++) { size_t index[NDIM2] = {y, x}; int data_in; if (nc_get_var1_int(ncid, varid, index, &data_in)) ERR; if (y == start2[0] && x == start2[1]) { if (data_in != data) ERR; } else { if (data_in != NC_FILL_INT) ERR; } } } /* Read and check each row with nc_get_vara_int(). */ for (size_t y = 0; y < NY; y++) { size_t start_row[NDIM2] = {y, 0}; size_t count_row[NDIM2] = {1, NX}; int data_in[NX]; if (nc_get_vara_int(ncid, varid, start_row, count_row, data_in)) ERR; if (y == start2[0]) { /* This row has data. */ for (x = 0; x < NX; x++) if (data_in[x] != (x == start2[1] ? TEST_VAL_42 : NC_FILL_INT)) ERR; } else { /* This row is all fill. */ for (x = 0; x < NX; x++) { /* printf("y %d x %d data %d\n", y, x, data_in[x]); */ if (data_in[x] != NC_FILL_INT) ERR; } } } if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** testing dimlen issue reported in 2357 by Jeff W..."); { /* This test code based on test code from Jeff Whitaker. See * https://github.com/Unidata/netcdf-c/issues/2357. This is a * simplified version. */ int varid, ncid; int dimids[NDIM2]; size_t start[NDIM2] = {0, 0}, count[NDIM2] = {DATALEN2, 1}, dimlen; int data[DATALEN2] = {42, 42}; if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; if (nc_def_dim(ncid, "x", DATALEN2, &dimids[0])) ERR; if (nc_def_dim(ncid, "t", NC_UNLIMITED, &dimids[1])) ERR; if (nc_def_var(ncid, "v", NC_INT, NDIM2, dimids, &varid)) ERR; if (nc_put_vara_int(ncid, varid, start, count, data)) ERR; start[1] = 1; if (nc_put_vara_int(ncid, varid, start, count, data)) ERR; if (nc_close(ncid)) ERR; /* Reopen file and add more data. */ if (nc_open(FILE_NAME, NC_WRITE, &ncid)) ERR; start[1] = 2; if (nc_put_vara_int(ncid, varid, start, count, data)) ERR; if (nc_inq_dimlen(ncid, dimids[1], &dimlen)) ERR; if (dimlen != 3) ERR; if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** testing dimlen with NC_UNLIMITED reopen and rewrite..."); { int varid, ncid; int dimid; size_t start[NDIM1] = {0}, count[NDIM1] = {DATALEN2}, dimlen; int data[DATALEN2] = {42, 42}; int data2 = 99; /* Create a file with unlimited dim and one var. */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; if (nc_def_dim(ncid, "Number_of_beaches", NC_UNLIMITED, &dimid)) ERR; if (nc_def_var(ncid, "Paros", NC_INT, NDIM1, &dimid, &varid)) ERR; if (nc_put_vara_int(ncid, varid, start, count, data)) ERR; if (nc_inq_dimlen(ncid, dimid, &dimlen)) ERR; if (dimlen != DATALEN2) ERR; if (nc_close(ncid)) ERR; /* Reopen file and change first element of array. */ if (nc_open(FILE_NAME, NC_WRITE, &ncid)) ERR; count[0] = 1; if (nc_put_vara_int(ncid, varid, start, count, &data2)) ERR; if (nc_inq_dimlen(ncid, dimid, &dimlen)) ERR; if (dimlen != 2) ERR; if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** testing dimlen issue reported in 2357 by Jeff W..."); { int i, dimidx, dimidt, varid, ncid; int dimids[NDIM2]; size_t start[NDIM2], count[NDIM2], dimlen; int data[DATALEN2]; if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; if (nc_def_dim(ncid, "x", DATALEN2, &dimidx)) ERR; if (nc_def_dim(ncid, "t", NC_UNLIMITED, &dimidt)) ERR; dimids[0] = dimidt; /* note order is now reversed */ dimids[1] = dimidx; if (nc_def_var(ncid, "v", NC_INT, NDIM2, dimids, &varid)) ERR; start[0]=0; start[1]=0; count[0]=1; count[1]=DATALEN2; for (i = 0; i < DATALEN2; i++) data[i] = 1; if (nc_put_vara_int(ncid, varid, start, count, data)) ERR; start[0]=1; start[1]=0; count[0]=1; count[1]=DATALEN2; for (i = 0; i < DATALEN2; i++) data[i] = 2; if (nc_put_vara_int(ncid, varid, start, count, data)) ERR; if (nc_close(ncid)) ERR; /* Reopen the file. */ if (nc_open(FILE_NAME, NC_WRITE, &ncid)) ERR; if (nc_inq_varid(ncid, "v", &varid)) ERR; if (nc_inq_dimid(ncid, "t", &dimidt)) ERR; start[0]=0; start[1]=0; count[0]=1; count[1]=DATALEN2; for (i = 0; i < DATALEN2; i++) data[i] = 0; if (nc_put_vara_int(ncid, varid, start, count, data)) ERR; if (nc_inq_dimlen(ncid, dimidt, &dimlen)) ERR; if (dimlen != DATALEN2) ERR; if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; FINAL_RESULTS; }