/* This is part of the netCDF package. Copyright 2008 University Corporation for Atmospheric Research/Unidata See COPYRIGHT file for conditions of use. See www.unidata.ucar.edu for more info. Create a test file with default fill values for variables of each type. $Id$ */ #include #include "err_macros.h" #include #include #include #define FILE_NAME "tst_fills2.nc" int main(int argc, char **argv) { /* create tst_classic_fills.nc */ printf("\n*** Testing fill values.\n"); printf("*** testing read of string record var with no data..."); { #define STRING_VAR_NAME "blood_toil_tears_sweat" #define NDIMS_STRING 1 #define DATA_START 1 /* Real data here. */ int ncid, varid, dimid, varid_in; const char *data_out[1] = { "We have before us an ordeal of the most grievous kind. We have before " "us many, many long months of struggle and of suffering. You ask, what " "is our policy? I can say: It is to wage war, by sea, land and air, " "with all our might and with all the strength that God can give us; to " "wage war against a monstrous tyranny, never surpassed in the dark, " "lamentable catalogue of human crime. That is our policy. You ask, what " "is our aim? " "I can answer in one word: It is victory, victory at all costs, victory " "in spite of all terror, victory, however long and hard the road may " "be; for without victory, there is no survival."}; char *data_in; size_t index = DATA_START; /* Create file with a 1D string var. Set its fill value to the * empty string. */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; if (nc_def_dim(ncid, "sentence", NC_UNLIMITED, &dimid)) ERR; if (nc_def_var(ncid, STRING_VAR_NAME, NC_STRING, NDIMS_STRING, &dimid, &varid)) ERR; /* Check it out. */ if (nc_inq_varid(ncid, STRING_VAR_NAME, &varid_in)) ERR; /* Write one string, leaving some blank records which will then * get the fill value. */ if (nc_put_var1_string(ncid, varid_in, &index, data_out)) ERR; /* Get all the data from the variable. */ if (nc_get_var1_string(ncid, varid_in, &index, &data_in)) ERR; if (strcmp(data_in, data_out[0])) ERR; free(data_in); if (nc_close(ncid)) ERR; /* Now re-open file, read data, and check values again. */ if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; data_in = NULL; if (nc_get_var1_string(ncid, varid_in, &index, &data_in)) ERR; if (strcmp(data_in, data_out[0])) ERR; free(data_in); if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** testing read of string record var w/fill-value with no data..."); { #undef STRING_VAR_NAME #define STRING_VAR_NAME "I_Have_A_Dream" #undef NDIMS_STRING #define NDIMS_STRING 1 #define FILLVALUE_LEN 1 /* There is 1 string, the empty one. */ #undef DATA_START #define DATA_START 2 /* Real data here. */ int ncid, varid, dimid, varid_in; const char *missing_val[FILLVALUE_LEN] = {""}; const char *missing_val_in[FILLVALUE_LEN]; const char *data_out[1] = { "With this faith, we will be able to hew out of the mountain of " "despair a stone of hope. With this faith, we will be able to " "transform the jangling discords of our nation into a beautiful " "symphony of brotherhood. With this faith, we will be able to work " "together, to pray together, to struggle together, to go to jail " "together, to stand up for freedom together, knowing that we will " "be free one day."}; char *data_in; size_t index = DATA_START; /* Create file with a 1D string var. Set its fill value to the * empty string. */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; if (nc_def_dim(ncid, "sentence", NC_UNLIMITED, &dimid)) ERR; if (nc_def_var(ncid, STRING_VAR_NAME, NC_STRING, NDIMS_STRING, &dimid, &varid)) ERR; if (nc_put_att_string(ncid, varid, "_FillValue", FILLVALUE_LEN, missing_val)) ERR; /* Check it out. */ if (nc_inq_varid(ncid, STRING_VAR_NAME, &varid_in)) ERR; if (nc_get_att_string(ncid, varid_in, "_FillValue", (char **)missing_val_in)) ERR; if (strcmp(missing_val[0], missing_val_in[0])) ERR; if (nc_free_string(FILLVALUE_LEN, (char **)missing_val_in)) ERR; /* Write one string, leaving some blank records which will then * get the fill value. */ if (nc_put_var1_string(ncid, varid_in, &index, data_out)) ERR; /* Get all the data from the variable. */ index = 0; data_in = NULL; if (nc_get_var1_string(ncid, varid_in, &index, &data_in)) ERR; if (strcmp(data_in, missing_val[0])) ERR; free(data_in); index = 1; data_in = NULL; if (nc_get_var1_string(ncid, varid_in, &index, &data_in)) ERR; if (strcmp(data_in, missing_val[0])) ERR; free(data_in); index = DATA_START; data_in = NULL; if (nc_get_var1_string(ncid, varid_in, &index, &data_in)) ERR; if (strcmp(data_in, data_out[0])) ERR; free(data_in); if (nc_close(ncid)) ERR; /* Now re-open file, read data, and check values again. */ if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_varid(ncid, STRING_VAR_NAME, &varid_in)) ERR; if (nc_get_att_string(ncid, varid_in, "_FillValue", (char **)missing_val_in)) ERR; if (strcmp(missing_val[0], missing_val_in[0])) ERR; if (nc_free_string(FILLVALUE_LEN, (char **)missing_val_in)) ERR; /* Get all the data from the variable. */ /* As of HDF5-1.8.12, reading from an unwritten chunk in a dataset with a * variable-length datatype and a fill-value set will error, instead * of retrieving the fill-value. -QAK */ #ifdef NOT_YET index = 0; data_in = NULL; if (nc_get_var1_string(ncid, varid_in, &index, &data_in)) ERR; if (strcmp(data_in, missing_val[0])) ERR; free(data_in); index = 1; data_in = NULL; if (nc_get_var1_string(ncid, varid_in, &index, &data_in)) ERR; if (strcmp(data_in, missing_val[0])) ERR; free(data_in); #endif /* NOT_YET */ index = DATA_START; data_in = NULL; if (nc_get_var1_string(ncid, varid_in, &index, &data_in)) ERR; if (strcmp(data_in, data_out[0])) ERR; free(data_in); if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** testing NULL fill values of a string var..."); { #undef STRING_VAR_NAME #define STRING_VAR_NAME "The_String" #define NDIMS_STRING 1 #define FILLVALUE_LEN 1 /* There is 1 string, the empty one. */ #define DATA_START 2 /* Real data here. */ int ncid, varid, dimid, varid_in; const char *missing_val[FILLVALUE_LEN] = {NULL}; const char *missing_val_in[FILLVALUE_LEN]; const char *data_out[1] = {"The evil that men do lives after them; " "the good is oft interred with their bones."}; char **data_in; size_t index = DATA_START; int i; /* Create file with a 1D string var. Set its fill value to the * empty string. */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; if (nc_def_dim(ncid, "rec", NC_UNLIMITED, &dimid)) ERR; if (nc_def_var(ncid, STRING_VAR_NAME, NC_STRING, NDIMS_STRING, &dimid, &varid)) ERR; if (nc_put_att_string(ncid, varid, "_FillValue", FILLVALUE_LEN, missing_val)) ERR; /* Check it out. */ if (nc_inq_varid(ncid, STRING_VAR_NAME, &varid_in)) ERR; if (nc_get_att_string(ncid, varid_in, "_FillValue", (char **)missing_val_in)) ERR; if (missing_val[0] != missing_val_in[0]) ERR; /* Write one string, leaving some blank records which will then * get the fill value. */ if (nc_put_var1_string(ncid, varid_in, &index, data_out)) ERR; /* Get all the data from the variable. */ if (!(data_in = malloc((DATA_START + 1) * sizeof(char *)))) ERR; if (nc_get_var_string(ncid, varid_in, data_in)) ERR; /* First there should be fill values, then the data value we * wrote. */ for (i = 0; i < DATA_START; i++) if (NULL != data_in[i]) ERR; if (strcmp(data_in[DATA_START], data_out[0])) ERR; if (nc_free_string(DATA_START + 1, data_in)) ERR; /* Close everything up */ if (nc_close(ncid)) ERR; /* Now re-open file, read data, and check values again. */ if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_varid(ncid, STRING_VAR_NAME, &varid_in)) ERR; if (nc_get_att_string(ncid, varid_in, "_FillValue", (char **)missing_val_in)) ERR; if (NULL != missing_val_in[0]) ERR; if (nc_free_string(FILLVALUE_LEN, (char **)missing_val_in)) ERR; /* Get all the data from the variable. */ if (nc_get_var_string(ncid, varid_in, data_in)) ERR; /* First there should be fill values, then the data value we * wrote. */ for (i = 0; i < DATA_START; i++) if (NULL != data_in[i]) ERR; if (strcmp(data_in[DATA_START], data_out[0])) ERR; if (nc_free_string(DATA_START + 1, data_in)) ERR; /* Close everything up */ if (nc_close(ncid)) ERR; free(data_in); } SUMMARIZE_ERR; printf("*** testing non-empty fill values of a string var..."); { #define STRING_VAR_NAME2 "CASSIUS" #define FILLVALUE_LEN2 1 /* There is 1 string in the fillvalue array. */ #define DATA_START2 9 /* Real data starts here. */ int ncid, varid, dimid, varid_in; const char *missing_val[FILLVALUE_LEN2] = {"I know that virtue to be in you, Brutus"}; const char *missing_val_in[FILLVALUE_LEN2]; const char *data_out[1] = {"The evil that men do lives after them; " "the good is oft interred with their bones."}; char **data_in; size_t index = DATA_START2; int i; /* Create file with a 1D string var. Set its fill value to the * a non-empty string. */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; if (nc_def_dim(ncid, "rec", NC_UNLIMITED, &dimid)) ERR; if (nc_def_var(ncid, STRING_VAR_NAME2, NC_STRING, NDIMS_STRING, &dimid, &varid)) ERR; if (nc_put_att_string(ncid, varid, "_FillValue", FILLVALUE_LEN2, missing_val)) ERR; /* Check it out. */ if (nc_inq_varid(ncid, STRING_VAR_NAME2, &varid_in)) ERR; if (nc_get_att_string(ncid, varid_in, "_FillValue", (char **)missing_val_in)) ERR; if (strcmp(missing_val[0], missing_val_in[0])) ERR; if (nc_free_string(FILLVALUE_LEN2, (char **)missing_val_in)) ERR; /* Write one string, leaving some blank records which will then * get the fill value. */ if (nc_put_var1_string(ncid, varid_in, &index, data_out)) ERR; /* Get all the data from the variable. */ if (!(data_in = malloc((DATA_START2 + 1) * sizeof(char *)))) ERR; if (nc_get_var_string(ncid, varid_in, data_in)) ERR; /* First there should be fill values, then the data value we * wrote. */ for (i = 0; i < DATA_START2; i++) if (strcmp(data_in[i], missing_val[0])) ERR; if (strcmp(data_in[DATA_START2], data_out[0])) ERR; if (nc_free_string(DATA_START2 + 1, data_in)) ERR; /* Close everything up. */ if (nc_close(ncid)) ERR; /* Now re-open file, read data, and check values again. */ if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_varid(ncid, STRING_VAR_NAME2, &varid_in)) ERR; if (nc_get_att_string(ncid, varid_in, "_FillValue", (char **)missing_val_in)) ERR; if (strcmp(missing_val[0], missing_val_in[0])) ERR; if (nc_free_string(FILLVALUE_LEN2, (char **)missing_val_in)) ERR; /* As of HDF5-1.8.12, reading from an unwritten chunk in a dataset with a * variable-length datatype and a fill-value set will error, instead * of retrieving the fill-value. -QAK */ #ifdef NOT_YET /* Get all the data from the variable. */ if (nc_get_var_string(ncid, varid_in, data_in)) ERR; /* First there should be fill values, then the data value we * wrote. */ for (i = 0; i < DATA_START2; i++) if (strcmp(data_in[i], missing_val[0])) ERR; if (strcmp(data_in[DATA_START2], data_out[0])) ERR; if (nc_free_string(DATA_START + 1, data_in)) ERR; #endif /* NOT_YET */ /* Close everything up. */ if (nc_close(ncid)) ERR; free(data_in); } SUMMARIZE_ERR; printf("*** testing read of string record var with no data..."); { #undef STRING_VAR_NAME #define STRING_VAR_NAME "Moon_Is_A_Harsh_Mistress" #define NDIMS_STRING 1 #define FILLVALUE_LEN 1 /* There is 1 string, the empty one. */ #define DATA_START 2 /* Real data here. */ int ncid, varid, dimid, varid_in; const char *missing_val[FILLVALUE_LEN] = {""}; char *missing_val_in; /* Create file with a 1D string var. Set its fill value to the * empty string. */ if (nc_create(FILE_NAME, NC_NETCDF4, &ncid)) ERR; if (nc_def_dim(ncid, "Lunar_Years", NC_UNLIMITED, &dimid)) ERR; if (nc_def_var(ncid, STRING_VAR_NAME, NC_STRING, NDIMS_STRING, &dimid, &varid)) ERR; if (nc_put_att_string(ncid, varid, "_FillValue", FILLVALUE_LEN, missing_val)) ERR; /* Check it out. */ if (nc_inq_varid(ncid, STRING_VAR_NAME, &varid_in)) ERR; if (nc_get_att_string(ncid, varid_in, "_FillValue", &missing_val_in)) ERR; if (strcmp(missing_val[0], missing_val_in)) ERR; if (nc_free_string(FILLVALUE_LEN, &missing_val_in)) ERR; /* Get all the data from the variable. There is none! */ if (nc_get_var_string(ncid, varid_in, NULL)) ERR; /* Close file. */ if (nc_close(ncid)) ERR; /* Now re-open file, and check again. */ if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; if (nc_inq_varid(ncid, STRING_VAR_NAME, &varid_in)) ERR; if (nc_get_att_string(ncid, varid_in, "_FillValue", &missing_val_in)) ERR; if (strcmp(missing_val[0], missing_val_in)) ERR; if (nc_free_string(FILLVALUE_LEN, &missing_val_in)) ERR; /* Get all the data from the variable. There is none! */ if (nc_get_var_string(ncid, varid_in, NULL)) ERR; /* Close file. */ if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** Testing fix for netCDF-4 fill-value bug..."); { int ncid, varid, dimids[1]; double fillval = -9999; /* Test case for NCF-187 bug, thanks to Alexander Barth for fix */ if (nc_create(FILE_NAME, NC_NETCDF4 | NC_CLASSIC_MODEL, &ncid)) ERR; if (nc_def_dim(ncid, "x", 182, &dimids[0])) ERR; if (nc_def_var(ncid, "u_obs", NC_FLOAT, 1, dimids, &varid)) ERR; if (nc_put_att_double (ncid, varid, "_FillValue", NC_FLOAT, 1, &fillval)) ERR; if (nc_close(ncid)) ERR; SUMMARIZE_ERR; } FINAL_RESULTS; }