/* This is part of the netCDF package. Copyright 2005 University Corporation for Atmospheric Research/Unidata See COPYRIGHT file for conditions of use. Test HDF5 file code. These are not intended to be exhaustive tests, but they use HDF5 the same way that netCDF-4 does, so if these tests don't work, than netCDF-4 won't work either. This files tests dataset creation and writing. */ #include "h5_err_macros.h" #include #define FILE_NAME "tst_h_vars.h5" #define GRP_NAME "Henry_V" #define VAR_BOOL_NAME "Southhamptons_Battle_Record" #define GRP2_NAME "Some_3D_Met_Data" #define DIM1_LEN 3 #define MAX_DIMS 255 int main() { hid_t fileid, grpid, spaceid, datasetid; int bool_out[DIM1_LEN] = {0, 1, 0}; hsize_t dims[1]; printf("\n*** Checking HDF5 variable functions.\n"); printf("*** Checking HDF5 boolen variables..."); /* Open file and create group. */ if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gcreate(fileid, GRP_NAME, 0)) < 0) ERR; /* Write an array of bools. */ dims[0] = DIM1_LEN; if ((spaceid = H5Screate_simple(1, dims, dims)) < 0) ERR; if ((datasetid = H5Dcreate(grpid, VAR_BOOL_NAME, H5T_NATIVE_HBOOL, spaceid, H5P_DEFAULT)) < 0) ERR; if (H5Dwrite(datasetid, H5T_NATIVE_HBOOL, H5S_ALL, H5S_ALL, H5P_DEFAULT, bool_out) < 0) ERR; if (H5Dclose(datasetid) < 0 || H5Sclose(spaceid) < 0 || H5Gclose(grpid) < 0 || H5Fclose(fileid) < 0) ERR; SUMMARIZE_ERR; printf("*** Checking HDF5 variable with unlimited dimension..."); { #define LAT_LEN 2 #define LON_LEN 3 #define NDIMS 3 #define LAT_NAME "Lat" #define LON_NAME "Lon" #define TIME_NAME "Time" #define PRES_NAME "Pressure" #define TEMP_NAME "Temperature" hid_t fileid, grpid, spaceid, write_spaceid, spaceid_in, mem_spaceid; hid_t pres_dsid, temp_dsid, cparmsid; float float_data_out[LAT_LEN][LON_LEN]; hsize_t dims[NDIMS], max_dims[NDIMS]; hsize_t dims_in[NDIMS], max_dims_in[NDIMS]; hsize_t start[MAX_DIMS], count[MAX_DIMS]; int lat, lon; /* Set up some phoney data, 1 record's worth. In C, first * dimension varies most slowly. */ for (lat = 0; lat < LAT_LEN; lat++) for (lon = 0; lon < LON_LEN; lon++) float_data_out[lat][lon] = -666.666; /* Create file and group. */ if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gcreate(fileid, GRP2_NAME, 0)) < 0) ERR; /* Create a space coresponding to these three dimensions. */ dims[0] = 0; dims[1] = LAT_LEN; dims[2] = LON_LEN; max_dims[0] = H5S_UNLIMITED; max_dims[1] = LAT_LEN; max_dims[2] = LON_LEN; if ((spaceid = H5Screate_simple(NDIMS, dims, max_dims)) < 0) ERR; /* Enable chunking for unlimited datasets. */ if ((cparmsid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR; dims[0] = 1; dims[1] = 1; dims[2] = 1; if (H5Pset_chunk(cparmsid, NDIMS, dims) < 0) ERR; /* Create two variables which use this space. */ if ((pres_dsid = H5Dcreate(grpid, PRES_NAME, H5T_NATIVE_FLOAT, spaceid, cparmsid)) < 0) ERR; if ((temp_dsid = H5Dcreate(grpid, TEMP_NAME, H5T_NATIVE_FLOAT, spaceid, cparmsid)) < 0) ERR; /* Get the spaceid and check various things. */ if ((spaceid_in = H5Dget_space(pres_dsid)) < 0) ERR; if (H5Sget_simple_extent_dims(spaceid_in, dims_in, max_dims_in) < 0) ERR; if (dims_in[0] != 0 || dims_in[1] != LAT_LEN || dims_in[2] != LON_LEN) ERR; if (max_dims_in[0] != H5S_UNLIMITED || max_dims_in[1] != LAT_LEN || max_dims_in[2] != LON_LEN) ERR; /* Extend each of them to hold one record. */ dims[0] = 1; dims[1] = LAT_LEN; dims[2] = LON_LEN; if (H5Dextend(pres_dsid, dims) < 0) ERR; if (H5Dextend(temp_dsid, dims) < 0) ERR; /* Create a space to deal with one record at a time in memory. */ if ((mem_spaceid = H5Screate_simple(NDIMS, dims, NULL)) < 0) ERR; /* Create a space to write one record. */ if ((write_spaceid = H5Screate_simple(NDIMS, dims, NULL)) < 0) ERR; /* Write one record of data to each dataset. */ if (H5Dwrite(pres_dsid, H5T_IEEE_F32BE, mem_spaceid, write_spaceid, H5P_DEFAULT, float_data_out) < 0) ERR; if (H5Dwrite(temp_dsid, H5T_IEEE_F32LE, mem_spaceid, write_spaceid, H5P_DEFAULT, float_data_out) < 0) ERR; /* Get the spaceid and check various things. */ if ((spaceid_in = H5Dget_space(temp_dsid)) < 0) ERR; if (H5Sget_simple_extent_dims(spaceid_in, dims_in, max_dims_in) < 0) ERR; if (dims_in[0] != 1 || dims_in[1] != LAT_LEN || dims_in[2] != LON_LEN) ERR; if (max_dims_in[0] != H5S_UNLIMITED || max_dims_in[1] != LAT_LEN || max_dims_in[2] != LON_LEN) ERR; /* Extend each of them to hold a second record. */ dims[0] = 2; dims[1] = LAT_LEN; dims[2] = LON_LEN; if (H5Dextend(pres_dsid, dims) < 0) ERR; if (H5Dextend(temp_dsid, dims) < 0) ERR; /* Create a space to write second record. */ if ((write_spaceid = H5Screate_simple(NDIMS, dims, NULL)) < 0) ERR; count[0] = 1; count[1] = LAT_LEN; count[2] = LON_LEN; start[0] = 1; start[1] = 0; start[2] = 0; if (H5Sselect_hyperslab(write_spaceid, H5S_SELECT_SET, start, NULL, count, NULL) < 0) ERR; /* Write second record of data to each dataset. */ if (H5Dwrite(pres_dsid, H5T_IEEE_F32LE, mem_spaceid, write_spaceid, H5P_DEFAULT, float_data_out) < 0) ERR; if (H5Dwrite(temp_dsid, H5T_IEEE_F32LE, mem_spaceid, write_spaceid, H5P_DEFAULT, float_data_out) < 0) ERR; /* Get the spaceid and check various things. */ if ((spaceid_in = H5Dget_space(pres_dsid)) < 0) ERR; if (H5Sget_simple_extent_dims(spaceid_in, dims_in, max_dims_in) < 0) ERR; if (dims_in[0] != 2 || dims_in[1] != LAT_LEN || dims_in[2] != LON_LEN) ERR; if (max_dims_in[0] != H5S_UNLIMITED || max_dims_in[1] != LAT_LEN || max_dims_in[2] != LON_LEN) ERR; /* Close up the shop. */ if (H5Dclose(pres_dsid) < 0 || H5Dclose(temp_dsid) < 0 || H5Sclose(spaceid) < 0 || H5Gclose(grpid) < 0 || H5Fclose(fileid) < 0) ERR; } SUMMARIZE_ERR; printf("*** Checking HDF5 deflate filter setting and getting..."); #define DEFLATE_LEVEL 9 #define MAX_NAME 100 #define NUM_CD_ELEM 10 /* HDF5 defines this... */ #define DEFLATE_NAME "deflate" { H5Z_filter_t filter; int num_filters; hid_t propid; unsigned int flags, cd_values[NUM_CD_ELEM], filter_config; size_t cd_nelems = NUM_CD_ELEM; size_t namelen = MAX_NAME; char name[MAX_NAME + 1]; /* Open file and create group. */ if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gcreate(fileid, GRP_NAME, 0)) < 0) ERR; /* Write an array of bools, with compression. */ dims[0] = DIM1_LEN; if ((propid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR; if (H5Pset_layout(propid, H5D_CHUNKED)) ERR; if (H5Pset_chunk(propid, 1, dims)) ERR; if (H5Pset_deflate(propid, DEFLATE_LEVEL)) ERR; if ((spaceid = H5Screate_simple(1, dims, dims)) < 0) ERR; if ((datasetid = H5Dcreate(grpid, VAR_BOOL_NAME, H5T_NATIVE_HBOOL, spaceid, propid)) < 0) ERR; if (H5Dwrite(datasetid, H5T_NATIVE_HBOOL, H5S_ALL, H5S_ALL, H5P_DEFAULT, bool_out) < 0) ERR; if (H5Dclose(datasetid) < 0 || H5Pclose(propid) < 0 || H5Sclose(spaceid) < 0 || H5Gclose(grpid) < 0 || H5Fclose(fileid) < 0) ERR; /* Now reopen the file and check. */ if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gopen(fileid, GRP_NAME)) < 0) ERR; if ((datasetid = H5Dopen1(grpid, VAR_BOOL_NAME)) < 0) ERR; if ((propid = H5Dget_create_plist(datasetid)) < 0) ERR; /* The possible values of filter (which is just an int) can be * found in H5Zpublic.h. */ if ((num_filters = H5Pget_nfilters(propid)) < 0) ERR; if (num_filters != 1) ERR; if ((filter = H5Pget_filter2(propid, 0, &flags, &cd_nelems, cd_values, namelen, name, &filter_config)) < 0) ERR; if (filter != H5Z_FILTER_DEFLATE || cd_nelems != 1 || cd_values[0] != DEFLATE_LEVEL || strcmp(name, DEFLATE_NAME)) ERR; if (H5Dclose(datasetid) < 0 || H5Pclose(propid) < 0 || H5Gclose(grpid) < 0 || H5Fclose(fileid) < 0) ERR; } SUMMARIZE_ERR; printf("*** Checking HDF5 deflate, fletcher32, shuffle filter setting and getting..."); { H5Z_filter_t filter; int num_filters; hid_t propid; unsigned int flags, cd_values[NUM_CD_ELEM], filter_config; size_t cd_nelems = NUM_CD_ELEM; size_t namelen = MAX_NAME; char name[MAX_NAME + 1]; int found_shuffle = 0, found_fletcher32 = 0, found_deflate = 0; int f; /* Open file and create group. */ if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gcreate(fileid, GRP_NAME, 0)) < 0) ERR; /* Write an array of bools, with compression, fletcher32 * checksum, shuffle filters. Like a hoogie with "the works." */ dims[0] = DIM1_LEN; if ((propid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR; if (H5Pset_layout(propid, H5D_CHUNKED)) ERR; if (H5Pset_chunk(propid, 1, dims)) ERR; if (H5Pset_shuffle(propid)) ERR; if (H5Pset_deflate(propid, DEFLATE_LEVEL)) ERR; if (H5Pset_fletcher32(propid)) ERR; if ((spaceid = H5Screate_simple(1, dims, dims)) < 0) ERR; if ((datasetid = H5Dcreate(grpid, VAR_BOOL_NAME, H5T_NATIVE_HBOOL, spaceid, propid)) < 0) ERR; if (H5Dwrite(datasetid, H5T_NATIVE_HBOOL, H5S_ALL, H5S_ALL, H5P_DEFAULT, bool_out) < 0) ERR; if (H5Dclose(datasetid) < 0 || H5Pclose(propid) < 0 || H5Sclose(spaceid) < 0 || H5Gclose(grpid) < 0 || H5Fclose(fileid) < 0) ERR; /* Now reopen the file and check. */ if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gopen(fileid, GRP_NAME)) < 0) ERR; if ((datasetid = H5Dopen1(grpid, VAR_BOOL_NAME)) < 0) ERR; if ((propid = H5Dget_create_plist(datasetid)) < 0) ERR; /* The possible values of filter (which is just an int) can be * found in H5Zpublic.h. */ if ((num_filters = H5Pget_nfilters(propid)) < 0) ERR; if (num_filters != 3) ERR; for (f = 0; f < num_filters; f++) { if ((filter = H5Pget_filter2(propid, f, &flags, &cd_nelems, cd_values, namelen, name, &filter_config)) < 0) ERR; switch (filter) { case H5Z_FILTER_SHUFFLE: found_shuffle++; break; case H5Z_FILTER_FLETCHER32: found_fletcher32++; break; case H5Z_FILTER_DEFLATE: found_deflate++; if (cd_nelems != 1 || cd_values[0] != DEFLATE_LEVEL || strcmp(name, DEFLATE_NAME)) ERR; break; default: break; } } if (!found_fletcher32 || !found_deflate || !found_shuffle) ERR; if (H5Dclose(datasetid) < 0 || H5Pclose(propid) < 0 || H5Gclose(grpid) < 0 || H5Fclose(fileid) < 0) ERR; } SUMMARIZE_ERR; printf("*** Checking HDF5 endianness control..."); #define NATIVE_VAR_NAME "native_var" #define LE_VAR_NAME "le_var" #define BE_VAR_NAME "be_var" { int data[DIM1_LEN], data_in[DIM1_LEN]; hid_t typeid, native_typeid; hid_t native_did, le_did, be_did; H5T_order_t order; htri_t equal; int i; for (i = 0; i < DIM1_LEN; i++) data[i] = i; /* Open file and create group. */ if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gcreate(fileid, GRP_NAME, 0)) < 0) ERR; /* Create a dataset of native endian. */ dims[0] = DIM1_LEN; if ((spaceid = H5Screate_simple(1, dims, dims)) < 0) ERR; if ((native_did = H5Dcreate(grpid, NATIVE_VAR_NAME, H5T_NATIVE_INT, spaceid, H5P_DEFAULT)) < 0) ERR; if ((le_did = H5Dcreate(grpid, LE_VAR_NAME, H5T_STD_I32LE, spaceid, H5P_DEFAULT)) < 0) ERR; if ((be_did = H5Dcreate(grpid, BE_VAR_NAME, H5T_STD_I32BE, spaceid, H5P_DEFAULT)) < 0) ERR; if (H5Dwrite(native_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data) < 0) ERR; if (H5Dwrite(le_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data) < 0) ERR; if (H5Dwrite(be_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data) < 0) ERR; if (H5Dclose(native_did) < 0 || H5Dclose(le_did) < 0 || H5Dclose(be_did) < 0 || H5Sclose(spaceid) < 0 || H5Gclose(grpid) < 0 || H5Fclose(fileid) < 0) ERR; /* Now reopen the file and check. */ if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDONLY, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gopen(fileid, GRP_NAME)) < 0) ERR; if ((native_did = H5Dopen1(grpid, NATIVE_VAR_NAME)) < 0) ERR; if ((typeid = H5Dget_type(native_did)) < 0) ERR; if ((native_typeid = H5Tget_native_type(typeid, H5T_DIR_DESCEND)) < 0) ERR; if ((order = H5Tget_order(typeid)) < 0) ERR; if ((equal = H5Tequal(typeid, native_typeid)) < 0) ERR; if (!equal) ERR; if (H5Dread(native_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data_in) < 0) ERR; for (i = 0; i < DIM1_LEN; i++) if (data[i] != data_in[i]) ERR; if ((le_did = H5Dopen1(grpid, LE_VAR_NAME)) < 0) ERR; if ((typeid = H5Dget_type(le_did)) < 0) ERR; if ((order = H5Tget_order(typeid)) < 0) ERR; if (order != H5T_ORDER_LE) ERR; if (H5Dread(le_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data_in) < 0) ERR; for (i = 0; i < DIM1_LEN; i++) if (data[i] != data_in[i]) ERR; if ((be_did = H5Dopen1(grpid, BE_VAR_NAME)) < 0) ERR; if ((typeid = H5Dget_type(be_did)) < 0) ERR; if ((order = H5Tget_order(typeid)) < 0) ERR; if (order != H5T_ORDER_BE) ERR; if (H5Dread(be_did, H5T_NATIVE_INT, H5S_ALL, H5S_ALL, H5P_DEFAULT, data_in) < 0) ERR; for (i = 0; i < DIM1_LEN; i++) if (data[i] != data_in[i]) ERR; if (H5Dclose(native_did) < 0 || H5Dclose(le_did) < 0 || H5Dclose(be_did) < 0 || H5Gclose(grpid) < 0 || H5Fclose(fileid) < 0) ERR; } SUMMARIZE_ERR; FINAL_RESULTS; }