/* This is part of the netCDF package. Copyright 2005 University Corporation for Atmospheric Research/Unidata See COPYRIGHT file for conditions of use. This program does some benchmarking of netCDF files for the AR-5 data. */ #include #include "err_macros.h" #include "netcdf.h" #include #include #include /* Extra high precision time info. */ #include <../ncdump/nciter.h> #define MILLION 1000000 #define MAX_LEN 30 #define TMP_FILE_NAME "tst_files2_tmp.out" /* This function uses the ps command to find the amount of memory in use by the process. From the ps man page: size SZ approximate amount of swap space that would be required if the process were to dirty all writable pages and then be swapped out. This number is very rough! */ void get_mem_used1(int *mem_used) { char cmd[NC_MAX_NAME + 1]; char blob[MAX_LEN + 1] = ""; FILE *fp; int num_char; /* Run the ps command for this process, putting output (one number) * into file TMP_FILE_NAME. */ sprintf(cmd, "ps -o size= %d > %s", getpid(), TMP_FILE_NAME); system(cmd); /* Read the results and delete temp file. */ if (!(fp = fopen(TMP_FILE_NAME, "r"))) exit; num_char = fread(blob, MAX_LEN, 1, fp); sscanf(blob, "%d", mem_used); fclose(fp); unlink(TMP_FILE_NAME); } int main(int argc, char **argv) { #define BUFSIZE 1000000 /* access data in megabyte sized pieces */ #define THETAU_FILE "/machine/downloads/AR5_sample_data/thetao_O1.SRESA1B_2.CCSM.ocnm.2000-01_cat_2099-12.nc" #define NDIMS_DATA 4 printf("\n*** Running some AR-5 benchmarks.\n"); printf("*** testing various chunksizes for thetau file...\n"); { int ncid, ncid_out; /*char var_buf[BUFSIZE];*/ /* buffer for variable data */ /* nciter_t iter; */ /* opaque structure for iteration status */ /* size_t start[NDIMS_DATA]; size_t count[NDIMS_DATA];*/ /*float *data = (float *)var_buf; */ char file_out[NC_MAX_NAME + 1]; /*int ndims, nvars, natts, unlimdimid;*/ size_t cs[NDIMS_DATA] = {120, 4, 40, 32}; /* /\* Open input. *\/ */ /* if (nc_open(THETAU_FILE, NC_NOWRITE, &ncid)) ERR; */ /* /\* Create output file. *\/ */ /* sprintf(file_out, "thetau_%d_%d_%d_%d.nc", (int)cs[0], */ /* (int)cs[1], (int)cs[2], (int)cs[3]); */ /* if (nc_create(file_out, NC_NOWRITE, &ncid_out)) ERR; */ /* /\* Copy the easy ones. *\/ */ /* /\* if (nc_inq(ncid, &ndims, &nvars, &natts, &unlimdimid)) ERR; */ /* if (ndims != 5 || nvars != 9 || natts != 8 || unlimdimid != 0) ERR;*\/ */ /* /\* /\\* Copy the main data payload with Russ's new nciters. *\\/ *\/ */ /* /\* varid = 8; *\/ */ /* /\* if (nc_get_iter(ncid, varid, BUFSIZE, &iter)) ERR; *\/ */ /* /\* while((nvals = nc_next_iter(&iter, start, count)) > 0) *\/ */ /* /\* { *\/ */ /* /\* /\\* read in a block of data *\\/ *\/ */ /* /\* if (nc_get_vara_double(ncid, varid, start, count, data)) ERR; *\/ */ /* /\* /\\* now write the changed data back out *\\/ *\/ */ /* /\* if (nc_out_vara_double(ncid, varid, start, count, data)) ERR; *\/ */ /* /\* } *\/ */ /* /\* if (nvals < 0) ERR; *\/ */ /* if (nc_close(ncid)) ERR; */ /* if (nc_close(ncid_out)) ERR; */ } SUMMARIZE_ERR; FINAL_RESULTS; }