/*! \file Functions for getting data from variables. Copyright 2011 University Corporation for Atmospheric Research/Unidata. See \ref copyright file for more info. */ #include "ncdispatch.h" #undef VARS_USES_VARM #ifndef VARS_USES_VARM /*! \internal */ struct GETodometer { int rank; size_t index[NC_MAX_VAR_DIMS]; size_t start[NC_MAX_VAR_DIMS]; size_t edges[NC_MAX_VAR_DIMS]; ptrdiff_t stride[NC_MAX_VAR_DIMS]; size_t stop[NC_MAX_VAR_DIMS]; }; /** * @internal Initialize odometer. * * @param odom Pointer to odometer. * @param rank * @param start Start indicies. * @param edges Counts. * @param stride Strides. * */ static void odom_init(struct GETodometer* odom, int rank, const size_t* start, const size_t* edges, const ptrdiff_t* stride) { int i; memset(odom,0,sizeof(struct GETodometer)); odom->rank = rank; assert(odom->rank <= NC_MAX_VAR_DIMS); for(i=0;irank;i++) { odom->start[i] = (start != NULL ? start[i] : 0); odom->edges[i] = (edges != NULL ? edges[i] : 1); odom->stride[i] = (stride != NULL ? stride[i] : 1); odom->stop[i] = odom->start[i] + (odom->edges[i]*((size_t)odom->stride[i])); odom->index[i] = odom->start[i]; } } /** * @internal Return true if there is more. * * @param odom Pointer to odometer. * * @return True if there is more, 0 otherwise. */ static int odom_more(struct GETodometer* odom) { return (odom->index[0] < odom->stop[0]); } /** * @internal Move odometer. * * @param odom Pointer to odometer. * * @return 0 or 1 */ static int odom_next(struct GETodometer* odom) { int i; if(odom->rank == 0) return 0; for(i=odom->rank-1;i>=0;i--) { odom->index[i] += (size_t)odom->stride[i]; if(odom->index[i] < odom->stop[i]) break; if(i == 0) return 0; /* leave the 0th entry if it overflows*/ odom->index[i] = odom->start[i]; /* reset this position*/ } return 1; } #endif /** \internal \ingroup variables */ int NC_get_vara(int ncid, int varid, const size_t *start, const size_t *edges, void *value, nc_type memtype) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; #ifdef USE_NETCDF4 if(memtype >= NC_FIRSTUSERTYPEID) memtype = NC_NAT; #endif if(edges == NULL) { size_t shape[NC_MAX_VAR_DIMS]; int ndims; stat = nc_inq_varndims(ncid, varid, &ndims); if(stat != NC_NOERR) return stat; stat = NC_getshape(ncid,varid,ndims,shape); if(stat != NC_NOERR) return stat; stat = ncp->dispatch->get_vara(ncid,varid,start,shape,value,memtype); } else stat = ncp->dispatch->get_vara(ncid,varid,start,edges,value,memtype); return stat; } /** Get data for a variable. \param ncid NetCDF or group ID. \param varid Variable ID \param value Pointer where the data will be copied. Memory must be allocated by the user before this function is called. \param memtype the NC type of the data after it is read into memory. Data are converted from the variable's type to the memtype as they are read. \returns ::NC_NOERR No error. \returns ::NC_ENOTVAR Variable not found. \returns ::NC_EINVALCOORDS Index exceeds dimension bound. \returns ::NC_EEDGE Start+count exceeds dimension bound. \returns ::NC_ERANGE One or more of the values are out of range. \returns ::NC_EINDEFINE Operation not allowed in define mode. \returns ::NC_EBADID Bad ncid. \ingroup variables \internal \author Dennis Heimbigner */ static int NC_get_var(int ncid, int varid, void *value, nc_type memtype) { int ndims; size_t shape[NC_MAX_VAR_DIMS]; int stat = nc_inq_varndims(ncid,varid, &ndims); if(stat) return stat; stat = NC_getshape(ncid,varid, ndims, shape); if(stat) return stat; return NC_get_vara(ncid, varid, NC_coord_zero, shape, value, memtype); } /** \internal \ingroup variables Most dispatch tables will use the default procedures */ int NCDEFAULT_get_vars(int ncid, int varid, const size_t * start, const size_t * edges, const ptrdiff_t * stride, void *value0, nc_type memtype) { #ifdef VARS_USES_VARM NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return ncp->dispatch->get_varm(ncid,varid,start,edges,stride,NULL,value0,memtype); #else /* Rebuilt get_vars code to simplify and avoid use of get_varm */ int status = NC_NOERR; int i,simplestride,isrecvar; int rank; struct GETodometer odom; nc_type vartype = NC_NAT; NC* ncp; int memtypelen; size_t vartypelen; size_t nels; char* value = (char*)value0; size_t numrecs; size_t varshape[NC_MAX_VAR_DIMS]; size_t mystart[NC_MAX_VAR_DIMS]; size_t myedges[NC_MAX_VAR_DIMS]; ptrdiff_t mystride[NC_MAX_VAR_DIMS]; char *memptr = NULL; status = NC_check_id (ncid, &ncp); if(status != NC_NOERR) return status; status = nc_inq_vartype(ncid, varid, &vartype); if(status != NC_NOERR) return status; if(memtype == NC_NAT) memtype = vartype; /* compute the variable type size */ status = nc_inq_type(ncid,vartype,NULL,&vartypelen); if(status != NC_NOERR) return status; if(memtype > NC_MAX_ATOMIC_TYPE) memtypelen = (int)vartypelen; else memtypelen = nctypelen(memtype); /* Check gross internal/external type compatibility */ if(vartype != memtype) { /* If !atomic, the two types must be the same */ if(vartype > NC_MAX_ATOMIC_TYPE || memtype > NC_MAX_ATOMIC_TYPE) return NC_EBADTYPE; /* ok, the types differ but both are atomic */ if(memtype == NC_CHAR || vartype == NC_CHAR) return NC_ECHAR; } /* Get the variable rank */ status = nc_inq_varndims(ncid, varid, &rank); if(status != NC_NOERR) return status; /* Get variable dimension sizes */ isrecvar = NC_is_recvar(ncid,varid,&numrecs); NC_getshape(ncid,varid,rank,varshape); /* Optimize out using various checks */ if (rank == 0) { /* * The variable is a scalar; consequently, * there s only one thing to get and only one place to put it. * (Why was I called?) */ size_t edge1[1] = {1}; return NC_get_vara(ncid, varid, start, edge1, value, memtype); } /* Do various checks and fixups on start/edges/stride */ simplestride = 1; /* assume so */ nels = 1; for(i=0;i dimlen) return NC_EINVALCOORDS; #else if (mystart[i] >= dimlen) return NC_EINVALCOORDS; #endif if(edges == NULL) { if(i == 0 && isrecvar) myedges[i] = numrecs - start[i]; else myedges[i] = varshape[i] - mystart[i]; } else myedges[i] = edges[i]; #ifdef RELAX_COORD_BOUND if (mystart[i] == dimlen && myedges[i] > 0) return NC_EINVALCOORDS; #endif /* myedges is unsigned, never < 0 */ if(mystart[i] + myedges[i] > dimlen) return NC_EEDGE; mystride[i] = (stride == NULL ? 1 : stride[i]); if(mystride[i] <= 0 /* cast needed for braindead systems with signed size_t */ || ((unsigned long) mystride[i] >= X_INT_MAX)) return NC_ESTRIDE; if(mystride[i] != 1) simplestride = 0; if(myedges[i] == 0) nels = 0; } if(nels == 0) return NC_NOERR; /* cannot read anything */ if(simplestride) { return NC_get_vara(ncid, varid, mystart, myedges, value, memtype); } /* memptr indicates where to store the next value */ memptr = value; odom_init(&odom,rank,mystart,myedges,mystride); /* walk the odometer to extract values */ while(odom_more(&odom)) { int localstatus = NC_NOERR; /* Read a single value */ localstatus = NC_get_vara(ncid,varid,odom.index,nc_sizevector1,memptr,memtype); /* So it turns out that when get_varm is used, all errors are delayed and ERANGE will be overwritten by more serious errors. */ if(localstatus != NC_NOERR) { if(status == NC_NOERR || localstatus != NC_ERANGE) status = localstatus; } memptr += memtypelen; odom_next(&odom); } return status; #endif } /** \internal \ingroup variables */ static int NC_get_var1(int ncid, int varid, const size_t *coord, void* value, nc_type memtype) { return NC_get_vara(ncid, varid, coord, NC_coord_one, value, memtype); } /** \internal \ingroup variables */ int NCDEFAULT_get_varm(int ncid, int varid, const size_t *start, const size_t *edges, const ptrdiff_t *stride, const ptrdiff_t *imapp, void *value0, nc_type memtype) { int status = NC_NOERR; nc_type vartype = NC_NAT; int varndims,maxidim; NC* ncp; int memtypelen; char* value = (char*)value0; status = NC_check_id (ncid, &ncp); if(status != NC_NOERR) return status; /* if(NC_indef(ncp)) return NC_EINDEFINE; */ status = nc_inq_vartype(ncid, varid, &vartype); if(status != NC_NOERR) return status; /* Check that this is an atomic type */ if(vartype > NC_MAX_ATOMIC_TYPE) return NC_EMAPTYPE; status = nc_inq_varndims(ncid, varid, &varndims); if(status != NC_NOERR) return status; if(memtype == NC_NAT) { memtype = vartype; } if(memtype == NC_CHAR && vartype != NC_CHAR) return NC_ECHAR; else if(memtype != NC_CHAR && vartype == NC_CHAR) return NC_ECHAR; memtypelen = nctypelen(memtype); maxidim = (int) varndims - 1; if (maxidim < 0) { /* * The variable is a scalar; consequently, * there s only one thing to get and only one place to put it. * (Why was I called?) */ size_t edge1[1] = {1}; return NC_get_vara(ncid, varid, start, edge1, value, memtype); } /* * else * The variable is an array. */ { int idim; size_t *mystart = NULL; size_t *myedges; size_t *iocount; /* count vector */ size_t *stop; /* stop indexes */ size_t *length; /* edge lengths in bytes */ ptrdiff_t *mystride; ptrdiff_t *mymap; size_t varshape[NC_MAX_VAR_DIMS]; int isrecvar; size_t numrecs; /* Compute some dimension related values */ isrecvar = NC_is_recvar(ncid,varid,&numrecs); NC_getshape(ncid,varid,varndims,varshape); /* * Verify stride argument; also see if stride is all ones */ if(stride != NULL) { int stride1 = 1; for (idim = 0; idim <= maxidim; ++idim) { if (stride[idim] == 0 /* cast needed for braindead systems with signed size_t */ || ((unsigned long) stride[idim] >= X_INT_MAX)) { return NC_ESTRIDE; } if(stride[idim] != 1) stride1 = 0; } /* If stride1 is true, and there is no imap then call get_vara directly. */ if(stride1 && imapp == NULL) { return NC_get_vara(ncid, varid, start, edges, value, memtype); } } /* assert(sizeof(ptrdiff_t) >= sizeof(size_t)); */ /* Allocate space for mystart,mystride,mymap etc.all at once */ mystart = (size_t *)calloc((size_t)(varndims * 7), sizeof(ptrdiff_t)); if(mystart == NULL) return NC_ENOMEM; myedges = mystart + varndims; iocount = myedges + varndims; stop = iocount + varndims; length = stop + varndims; mystride = (ptrdiff_t *)(length + varndims); mymap = mystride + varndims; /* * Check start, edges */ for (idim = maxidim; idim >= 0; --idim) { size_t dimlen = idim == 0 && isrecvar ? numrecs : varshape[idim]; mystart[idim] = start != NULL ? start[idim] : 0; #ifdef RELAX_COORD_BOUND if (mystart[idim] > dimlen) #else if (mystart[idim] >= dimlen) #endif { status = NC_EINVALCOORDS; goto done; } #ifdef COMPLEX myedges[idim] = edges != NULL ? edges[idim] : idim == 0 && isrecvar ? numrecs - mystart[idim] : varshape[idim] - mystart[idim]; #else if(edges != NULL) myedges[idim] = edges[idim]; else if (idim == 0 && isrecvar) myedges[idim] = numrecs - mystart[idim]; else myedges[idim] = varshape[idim] - mystart[idim]; #endif #ifdef RELAX_COORD_BOUND if (mystart[idim] == dimlen && myedges[idim] > 0) { status = NC_EINVALCOORDS; goto done; } #endif if (mystart[idim] + myedges[idim] > dimlen) { status = NC_EEDGE; goto done; } } /* * Initialize I/O parameters. */ for (idim = maxidim; idim >= 0; --idim) { if (edges != NULL && edges[idim] == 0) { status = NC_NOERR; /* read/write no data */ goto done; } mystride[idim] = stride != NULL ? stride[idim] : 1; /* Remember: in netCDF-2 imapp is byte oriented, not index oriented * Starting from netCDF-3, imapp is index oriented */ #ifdef COMPLEX mymap[idim] = (imapp != NULL ? imapp[idim] : (idim == maxidim ? 1 : mymap[idim + 1] * (ptrdiff_t) myedges[idim + 1])); #else if(imapp != NULL) mymap[idim] = imapp[idim]; else if (idim == maxidim) mymap[idim] = 1; else mymap[idim] = mymap[idim + 1] * (ptrdiff_t) myedges[idim + 1]; #endif iocount[idim] = 1; length[idim] = ((size_t)mymap[idim]) * myedges[idim]; stop[idim] = (mystart[idim] + myedges[idim] * (size_t)mystride[idim]); } /* Lower body */ /* * As an optimization, adjust I/O parameters when the fastest * dimension has unity stride both externally and internally. * In this case, the user could have called a simpler routine * (i.e. ncvar$1() */ if (mystride[maxidim] == 1 && mymap[maxidim] == 1) { iocount[maxidim] = myedges[maxidim]; mystride[maxidim] = (ptrdiff_t) myedges[maxidim]; mymap[maxidim] = (ptrdiff_t) length[maxidim]; } /* * Perform I/O. Exit when done. */ for (;;) { /* TODO: */ int lstatus = NC_get_vara(ncid, varid, mystart, iocount, value, memtype); if (lstatus != NC_NOERR) { if(status == NC_NOERR || lstatus != NC_ERANGE) status = lstatus; } /* * The following code permutes through the variable s * external start-index space and it s internal address * space. At the UPC, this algorithm is commonly * called "odometer code". */ idim = maxidim; carry: value += (((int)mymap[idim]) * memtypelen); mystart[idim] += (size_t)mystride[idim]; if (mystart[idim] == stop[idim]) { size_t l = (length[idim] * (size_t)memtypelen); value -= l; mystart[idim] = start[idim]; if (--idim < 0) break; /* normal return */ goto carry; } } /* I/O loop */ done: free(mystart); } /* variable is array */ return status; } /** Called by externally visible nc_get_vars_xxx routines. \param ncid NetCDF or group ID. \param varid Variable ID \param start start indices. \param edges count indices. \param stride data strides. \param value Pointer where the data will be copied. Memory must be allocated by the user before this function is called. \param memtype the NC type of the data after it is read into memory. Data are converted from the variable's type to the memtype as they are read. \returns ::NC_NOERR No error. \returns ::NC_ENOTVAR Variable not found. \returns ::NC_EINVALCOORDS Index exceeds dimension bound. \returns ::NC_EEDGE Start+count exceeds dimension bound. \returns ::NC_ERANGE One or more of the values are out of range. \returns ::NC_EINDEFINE Operation not allowed in define mode. \returns ::NC_EBADID Bad ncid. \ingroup variables \internal \author Dennis Heimbigner */ static int NC_get_vars(int ncid, int varid, const size_t *start, const size_t *edges, const ptrdiff_t *stride, void *value, nc_type memtype) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; #ifdef USE_NETCDF4 if(memtype >= NC_FIRSTUSERTYPEID) memtype = NC_NAT; #endif return ncp->dispatch->get_vars(ncid,varid,start,edges,stride,value,memtype); } /** Called by externally visible nc_get_varm_xxx routines. Note that the varm routines are deprecated. Use the vars routines instead for new code. \param ncid NetCDF or group ID. \param varid Variable ID \param start start indices. \param edges count indices. \param stride data strides. \param map mapping of dimensions. \param value Pointer where the data will be copied. Memory must be allocated by the user before this function is called. \param memtype the NC type of the data after it is read into memory. Data are converted from the variable's type to the memtype as they are read. \returns ::NC_NOERR No error. \returns ::NC_ENOTVAR Variable not found. \returns ::NC_EINVALCOORDS Index exceeds dimension bound. \returns ::NC_EEDGE Start+count exceeds dimension bound. \returns ::NC_ERANGE One or more of the values are out of range. \returns ::NC_EINDEFINE Operation not allowed in define mode. \returns ::NC_EBADID Bad ncid. \ingroup variables \internal \author Dennis Heimbigner */ static int NC_get_varm(int ncid, int varid, const size_t *start, const size_t *edges, const ptrdiff_t *stride, const ptrdiff_t* map, void *value, nc_type memtype) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; #ifdef USE_NETCDF4 if(memtype >= NC_FIRSTUSERTYPEID) memtype = NC_NAT; #endif return ncp->dispatch->get_varm(ncid,varid,start,edges,stride,map,value,memtype); } /** \name Reading Data from Variables Functions to read data from variables. */ /*! \{ */ /* All these functions are part of this named group... */ /** \ingroup variables Read an array of values from a variable. The array to be read is specified by giving a corner and a vector of edge lengths to \ref specify_hyperslab. The data values are read into consecutive locations with the last dimension varying fastest. The netCDF dataset must be in data mode (for netCDF-4/HDF5 files, the switch to data mode will happen automatically, unless the classic model is used). The nc_get_vara() function will read a variable of any type, including user defined type. For this function, the type of the data in memory must match the type of the variable - no data conversion is done. Other nc_get_vara_ functions will convert data to the desired output type as needed. \param ncid NetCDF or group ID, from a previous call to nc_open(), nc_create(), nc_def_grp(), or associated inquiry functions such as nc_inq_ncid(). \param varid Variable ID \param startp Start vector with one element for each dimension to \ref specify_hyperslab. \param countp Count vector with one element for each dimension to \ref specify_hyperslab. \param ip Pointer where the data will be copied. Memory must be allocated by the user before this function is called. \returns ::NC_NOERR No error. \returns ::NC_ENOTVAR Variable not found. \returns ::NC_EINVALCOORDS Index exceeds dimension bound. \returns ::NC_EEDGE Start+count exceeds dimension bound. \returns ::NC_ERANGE One or more of the values are out of range. \returns ::NC_EINDEFINE Operation not allowed in define mode. \returns ::NC_EBADID Bad ncid. \section nc_get_vara_double_example Example Here is an example using nc_get_vara_double() to read all the values of the variable named rh from an existing netCDF dataset named foo.nc. For simplicity in this example, we assume that we know that rh is dimensioned with time, lat, and lon, and that there are three time values, five lat values, and ten lon values. \code #include ... #define TIMES 3 #define LATS 5 #define LONS 10 int status; int ncid; int rh_id; static size_t start[] = {0, 0, 0}; static size_t count[] = {TIMES, LATS, LONS}; double rh_vals[TIMES*LATS*LONS]; ... status = nc_open("foo.nc", NC_NOWRITE, &ncid); if (status != NC_NOERR) handle_error(status); ... status = nc_inq_varid (ncid, "rh", &rh_id); if (status != NC_NOERR) handle_error(status); ... status = nc_get_vara_double(ncid, rh_id, start, count, rh_vals); if (status != NC_NOERR) handle_error(status); \endcode */ /**@{*/ int nc_get_vara(int ncid, int varid, const size_t *startp, const size_t *countp, void *ip) { NC* ncp = NULL; nc_type xtype = NC_NAT; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; stat = nc_inq_vartype(ncid, varid, &xtype); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid, varid, startp, countp, ip, xtype); } int nc_get_vara_text(int ncid, int varid, const size_t *startp, const size_t *countp, char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid, varid, startp, countp, (void *)ip, NC_CHAR); } int nc_get_vara_schar(int ncid, int varid, const size_t *startp, const size_t *countp, signed char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid, varid, startp, countp, (void *)ip, NC_BYTE); } int nc_get_vara_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid, varid, startp, countp, (void *)ip, T_uchar); } int nc_get_vara_short(int ncid, int varid, const size_t *startp, const size_t *countp, short *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid, varid, startp, countp, (void *)ip, NC_SHORT); } int nc_get_vara_int(int ncid, int varid, const size_t *startp, const size_t *countp, int *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid,varid,startp,countp, (void *)ip,NC_INT); } int nc_get_vara_long(int ncid, int varid, const size_t *startp, const size_t *countp, long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_long); } int nc_get_vara_float(int ncid, int varid, const size_t *startp, const size_t *countp, float *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_float); } int nc_get_vara_double(int ncid, int varid, const size_t *startp, const size_t *countp, double *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_double); } int nc_get_vara_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_ubyte); } int nc_get_vara_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned short *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_ushort); } int nc_get_vara_uint(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned int *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_uint); } int nc_get_vara_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, long long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid,varid,startp,countp, (void *)ip,T_longlong); } int nc_get_vara_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned long long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid,varid,startp,countp, (void *)ip,NC_UINT64); } #ifdef USE_NETCDF4 int nc_get_vara_string(int ncid, int varid, const size_t *startp, const size_t *countp, char* *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vara(ncid,varid,startp,countp, (void *)ip,NC_STRING); } #endif /*USE_NETCDF4*/ /**@}*/ /** \ingroup variables Read a single datum from a variable. Inputs are the netCDF ID, the variable ID, a multidimensional index that specifies which value to get, and the address of a location into which the data value will be read. The value is converted from the external data type of the variable, if necessary. The nc_get_var1() function will read a variable of any type, including user defined type. For this function, the type of the data in memory must match the type of the variable - no data conversion is done. Other nc_get_var1_ functions will convert data to the desired output type as needed. \param ncid NetCDF or group ID, from a previous call to nc_open(), nc_create(), nc_def_grp(), or associated inquiry functions such as nc_inq_ncid(). \param varid Variable ID \param indexp Index vector with one element for each dimension. \param ip Pointer where the data will be copied. Memory must be allocated by the user before this function is called. \returns ::NC_NOERR No error. \returns ::NC_ENOTVAR Variable not found. \returns ::NC_EINVALCOORDS Index exceeds dimension bound. \returns ::NC_ERANGE One or more of the values are out of range. \returns ::NC_EINDEFINE Operation not allowed in define mode. \returns ::NC_EBADID Bad ncid. */ /** \{ */ int nc_get_var1(int ncid, int varid, const size_t *indexp, void *ip) { return NC_get_var1(ncid, varid, indexp, ip, NC_NAT); } int nc_get_var1_text(int ncid, int varid, const size_t *indexp, char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_CHAR); } int nc_get_var1_schar(int ncid, int varid, const size_t *indexp, signed char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_BYTE); } int nc_get_var1_uchar(int ncid, int varid, const size_t *indexp, unsigned char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_UBYTE); } int nc_get_var1_short(int ncid, int varid, const size_t *indexp, short *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_SHORT); } int nc_get_var1_int(int ncid, int varid, const size_t *indexp, int *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_INT); } int nc_get_var1_long(int ncid, int varid, const size_t *indexp, long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, longtype); } int nc_get_var1_float(int ncid, int varid, const size_t *indexp, float *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_FLOAT); } int nc_get_var1_double(int ncid, int varid, const size_t *indexp, double *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_DOUBLE); } int nc_get_var1_ubyte(int ncid, int varid, const size_t *indexp, unsigned char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_UBYTE); } int nc_get_var1_ushort(int ncid, int varid, const size_t *indexp, unsigned short *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_USHORT); } int nc_get_var1_uint(int ncid, int varid, const size_t *indexp, unsigned int *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_UINT); } int nc_get_var1_longlong(int ncid, int varid, const size_t *indexp, long long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_INT64); } int nc_get_var1_ulonglong(int ncid, int varid, const size_t *indexp, unsigned long long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_UINT64); } #ifdef USE_NETCDF4 int nc_get_var1_string(int ncid, int varid, const size_t *indexp, char* *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var1(ncid, varid, indexp, (void *)ip, NC_STRING); } #endif /*USE_NETCDF4*/ /** \} */ /** \ingroup variables Read an entire variable in one call. This function will read all the values from a netCDF variable of an open netCDF dataset. This is the simplest interface to use for reading the value of a scalar variable or when all the values of a multidimensional variable can be read at once. The values are read into consecutive locations with the last dimension varying fastest. The netCDF dataset must be in data mode. Take care when using this function with record variables (variables that use the ::NC_UNLIMITED dimension). If you try to read all the values of a record variable into an array but there are more records in the file than you assume, more data will be read than you expect, which may cause a segmentation violation. To avoid such problems, it is better to use the nc_get_vara interfaces for variables that use the ::NC_UNLIMITED dimension. The functions for types ubyte, ushort, uint, longlong, ulonglong, and string are only available for netCDF-4/HDF5 files. The nc_get_var() function will read a variable of any type, including user defined type. For this function, the type of the data in memory must match the type of the variable - no data conversion is done. \param ncid NetCDF or group ID, from a previous call to nc_open(), nc_create(), nc_def_grp(), or associated inquiry functions such as nc_inq_ncid(). \param varid Variable ID \param ip Pointer where the data will be copied. Memory must be allocated by the user before this function is called. \returns ::NC_NOERR No error. \returns ::NC_ENOTVAR Variable not found. \returns ::NC_ERANGE One or more of the values are out of range. \returns ::NC_EINDEFINE Operation not allowed in define mode. \returns ::NC_EBADID Bad ncid. */ /** \{ */ int nc_get_var(int ncid, int varid, void *ip) { return NC_get_var(ncid, varid, ip, NC_NAT); } int nc_get_var_text(int ncid, int varid, char *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid, varid, (void *)ip, NC_CHAR); } int nc_get_var_schar(int ncid, int varid, signed char *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid, varid, (void *)ip, NC_BYTE); } int nc_get_var_uchar(int ncid, int varid, unsigned char *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid,varid, (void *)ip, NC_UBYTE); } int nc_get_var_short(int ncid, int varid, short *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid, varid, (void *)ip, NC_SHORT); } int nc_get_var_int(int ncid, int varid, int *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid,varid, (void *)ip, NC_INT); } int nc_get_var_long(int ncid, int varid, long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid,varid, (void *)ip, longtype); } int nc_get_var_float(int ncid, int varid, float *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid,varid, (void *)ip, NC_FLOAT); } int nc_get_var_double(int ncid, int varid, double *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid,varid, (void *)ip, NC_DOUBLE); } int nc_get_var_ubyte(int ncid, int varid, unsigned char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid,varid, (void *)ip, NC_UBYTE); } int nc_get_var_ushort(int ncid, int varid, unsigned short *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid,varid, (void *)ip, NC_USHORT); } int nc_get_var_uint(int ncid, int varid, unsigned int *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid,varid, (void *)ip, NC_UINT); } int nc_get_var_longlong(int ncid, int varid, long long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid,varid, (void *)ip, NC_INT64); } int nc_get_var_ulonglong(int ncid, int varid, unsigned long long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid,varid, (void *)ip,NC_UINT64); } #ifdef USE_NETCDF4 int nc_get_var_string(int ncid, int varid, char* *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_var(ncid,varid, (void *)ip,NC_STRING); } #endif /*USE_NETCDF4*/ /** \} */ /** \ingroup variables Read a strided array from a variable. This function reads a subsampled (strided) array section of values from a netCDF variable of an open netCDF dataset. The subsampled array section is specified by giving a corner, a vector of edge lengths, and a stride vector. The values are read with the last dimension of the netCDF variable varying fastest. The netCDF dataset must be in data mode. The nc_get_vars() function will read a variable of any type, including user defined type. For this function, the type of the data in memory must match the type of the variable - no data conversion is done. \param ncid NetCDF or group ID, from a previous call to nc_open(), nc_create(), nc_def_grp(), or associated inquiry functions such as nc_inq_ncid(). \param varid Variable ID \param startp Start vector with one element for each dimension to \ref specify_hyperslab. \param countp Count vector with one element for each dimension to \ref specify_hyperslab. \param stridep Stride vector with one element for each dimension to \ref specify_hyperslab. \param ip Pointer where the data will be copied. Memory must be allocated by the user before this function is called. \returns ::NC_NOERR No error. \returns ::NC_ENOTVAR Variable not found. \returns ::NC_EINVALCOORDS Index exceeds dimension bound. \returns ::NC_ERANGE One or more of the values are out of range. \returns ::NC_EINDEFINE Operation not allowed in define mode. \returns ::NC_EBADID Bad ncid. */ /** \{ */ int nc_get_vars (int ncid, int varid, const size_t * startp, const size_t * countp, const ptrdiff_t * stridep, void *ip) { NC* ncp; int stat = NC_NOERR; if ((stat = NC_check_id(ncid, &ncp))) return stat; return ncp->dispatch->get_vars(ncid, varid, startp, countp, stridep, ip, NC_NAT); } int nc_get_vars_text(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid,varid,startp, countp, stridep, (void *)ip, NC_CHAR); } int nc_get_vars_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, signed char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid,varid,startp, countp, stridep, (void *)ip, NC_BYTE); } int nc_get_vars_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, unsigned char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid,varid,startp, countp, stridep, (void *)ip, T_uchar); } int nc_get_vars_short(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, short *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid,varid,startp, countp, stridep, (void *)ip, NC_SHORT); } int nc_get_vars_int(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, int *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid,varid,startp, countp, stridep, (void *)ip, NC_INT); } int nc_get_vars_long(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid,varid,startp, countp, stridep, (void *)ip, T_long); } int nc_get_vars_float(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, float *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid,varid,startp, countp, stridep, (void *)ip, T_float); } int nc_get_vars_double(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, double *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid,varid,startp, countp, stridep, (void *)ip, T_double); } int nc_get_vars_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, unsigned char *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid,varid, startp, countp, stridep, (void *)ip, T_ubyte); } int nc_get_vars_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, unsigned short *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid,varid,startp,countp, stridep, (void *)ip, T_ushort); } int nc_get_vars_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, unsigned int *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid,varid,startp, countp, stridep, (void *)ip, T_uint); } int nc_get_vars_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, long long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid, varid, startp, countp, stridep, (void *)ip, T_longlong); } int nc_get_vars_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, unsigned long long *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid, varid, startp, countp, stridep, (void *)ip, NC_UINT64); } #ifdef USE_NETCDF4 int nc_get_vars_string(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t * stridep, char* *ip) { NC* ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_vars(ncid, varid, startp, countp, stridep, (void *)ip, NC_STRING); } #endif /*USE_NETCDF4*/ /** \} */ /** \ingroup variables Read a mapped array from a variable. The nc_get_varm_ type family of functions reads a mapped array section of values from a netCDF variable of an open netCDF dataset. The mapped array section is specified by giving a corner, a vector of edge lengths, a stride vector, and an index mapping vector. The index mapping vector is a vector of integers that specifies the mapping between the dimensions of a netCDF variable and the in-memory structure of the internal data array. No assumptions are made about the ordering or length of the dimensions of the data array. The netCDF dataset must be in data mode. The functions for types ubyte, ushort, uint, longlong, ulonglong, and string are only available for netCDF-4/HDF5 files. The nc_get_varm() function will only read a variable of an atomic type; it will not read user defined types. For this function, the type of the data in memory must match the type of the variable - no data conversion is done. @deprecated Use of this family of functions is discouraged, although it will continue to be supported. The reason is the complexity of the algorithm makes its use difficult for users to properly use. \param ncid NetCDF or group ID, from a previous call to nc_open(), nc_create(), nc_def_grp(), or associated inquiry functions such as nc_inq_ncid(). \param varid Variable ID \param startp Start vector with one element for each dimension to \ref specify_hyperslab. \param countp Count vector with one element for each dimension to \ref specify_hyperslab. \param stridep Stride vector with one element for each dimension to \ref specify_hyperslab. \param imapp Mapping vector with one element for each dimension to \ref specify_hyperslab. \param ip Pointer where the data will be copied. Memory must be allocated by the user before this function is called. \returns ::NC_NOERR No error. \returns ::NC_ENOTVAR Variable not found. \returns ::NC_EINVALCOORDS Index exceeds dimension bound. \returns ::NC_ERANGE One or more of the values are out of range. \returns ::NC_EINDEFINE Operation not allowed in define mode. \returns ::NC_EBADID Bad ncid. */ /** \{ */ int nc_get_varm(int ncid, int varid, const size_t * startp, const size_t * countp, const ptrdiff_t * stridep, const ptrdiff_t * imapp, void *ip) { NC* ncp; int stat = NC_NOERR; if ((stat = NC_check_id(ncid, &ncp))) return stat; return ncp->dispatch->get_varm(ncid, varid, startp, countp, stridep, imapp, ip, NC_NAT); } int nc_get_varm_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, signed char *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid, varid, startp, countp, stridep, imapp, (void *)ip, NC_BYTE); } int nc_get_varm_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, unsigned char *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,T_uchar); } int nc_get_varm_short(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, short *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,NC_SHORT); } int nc_get_varm_int(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, int *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,NC_INT); } int nc_get_varm_long(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, long *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,T_long); } int nc_get_varm_float(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, float *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,T_float); } int nc_get_varm_double(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, double *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid,varid,startp,countp,stridep,imapp, (void *)ip,T_double); } int nc_get_varm_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, unsigned char *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid,varid,startp,countp,stridep, imapp, (void *)ip, T_ubyte); } int nc_get_varm_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, unsigned short *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid, varid, startp, countp, stridep, imapp, (void *)ip, T_ushort); } int nc_get_varm_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, unsigned int *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid, varid, startp, countp, stridep, imapp, (void *)ip, T_uint); } int nc_get_varm_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, long long *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid, varid, startp, countp, stridep, imapp, (void *)ip, T_longlong); } int nc_get_varm_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, unsigned long long *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid, varid, startp, countp, stridep, imapp, (void *)ip, NC_UINT64); } int nc_get_varm_text(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, char *ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid, varid, startp, countp, stridep, imapp, (void *)ip, NC_CHAR); } #ifdef USE_NETCDF4 int nc_get_varm_string(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, char **ip) { NC *ncp; int stat = NC_check_id(ncid, &ncp); if(stat != NC_NOERR) return stat; return NC_get_varm(ncid, varid, startp, countp, stridep, imapp, (void *)ip, NC_STRING); } /** \} */ #endif /*USE_NETCDF4*/ /*! \} */ /* End of named group... */