/********************************************************************* * Copyright 1996, UCAR/Unidata * See netcdf/COPYRIGHT file for copying and redistribution conditions. * $Id: util.c 2792 2014-10-27 06:02:59Z wkliao $ *********************************************************************/ #include /* floor() */ #include "tests.h" void print_nok(int nok) { if (verbose || nfails > 0) print("\n"); print(" %d good comparisons. ", nok); } /* Is value within external type range? */ int inRange(const double value, const nc_type xtype) { switch (xtype) { double min = 0.0; double max = 0.0; case NC_CHAR: return value >= X_CHAR_MIN && value <= X_CHAR_MAX; case NC_BYTE: return value >= X_BYTE_MIN && value <= X_BYTE_MAX; case NC_SHORT: return value >= X_SHORT_MIN && value <= X_SHORT_MAX; case NC_INT: return value >= X_INT_MIN && value <= X_INT_MAX; case NC_FLOAT: return value >= X_FLOAT_MIN && value <= X_FLOAT_MAX; case NC_DOUBLE: return value >= X_DOUBLE_MIN && value <= X_DOUBLE_MAX; case NC_UBYTE: return value >= 0 && value <= X_UCHAR_MAX; case NC_USHORT: return value >= 0 && value <= X_USHORT_MAX; case NC_UINT: return value >= 0 && value <= X_UINT_MAX; case NC_INT64: return value >= X_INT64_MIN && value <= X_INT64_MAX; case NC_UINT64: return value >= 0 && value <= X_UINT64_MAX; default: assert(0); return(0); } } static int inRange_uchar(const int cdf_format, const double value, const nc_type xtype) { /* check value of type xtype if within uchar range */ if (cdf_format < NC_FORMAT_CDF5 && xtype == NC_BYTE) { /* netCDF specification make a special case for type conversion between * uchar and scahr: do not check for range error. See * http://www.unidata.ucar.edu/software/netcdf/docs/data_type.html#type_conversion */ return(value >= 0 && value <= 255); /* this is to ensure value is within the range of uchar */ } /* else */ return inRange(value, xtype); } static int inRange_float(const double value, const nc_type xtype) { double min, max; switch (xtype) { case NC_CHAR: min = X_CHAR_MIN; max = X_CHAR_MAX; break; case NC_BYTE: min = X_BYTE_MIN; max = X_BYTE_MAX; break; case NC_SHORT: min = X_SHORT_MIN; max = X_SHORT_MAX; break; case NC_INT: min = X_INT_MIN; max = X_INT_MAX; break; case NC_FLOAT: if(FLT_MAX < X_FLOAT_MAX) { min = (-FLT_MAX); max = FLT_MAX; } else { min = X_FLOAT_MIN; max = X_FLOAT_MAX; } break; case NC_DOUBLE: if(FLT_MAX < X_DOUBLE_MAX) { min = (-FLT_MAX); max = FLT_MAX; } else { min = X_DOUBLE_MIN; max = X_DOUBLE_MAX; } break; case NC_UBYTE: min = 0; max = X_UCHAR_MAX; break; case NC_USHORT: min = 0; max = X_USHORT_MAX; break; case NC_UINT: min = 0; max = X_UINT_MAX; break; case NC_INT64: min = X_INT64_MIN; max = X_INT64_MAX; break; case NC_UINT64: min = 0; max = X_UINT64_MAX; break; default: assert(0); } if(!( value >= min && value <= max)) { #if 0 /* DEBUG */ if(xtype == NC_FLOAT) { fprintf(stderr, "\n"); fprintf(stderr, "min % .17e\n", min); fprintf(stderr, "value % .17e\n", value); fprintf(stderr, "max % .17e\n", max); } #endif return 0; } #if FLT_MANT_DIG != DBL_MANT_DIG /* else */ { const float fvalue = (float)value; return fvalue >= min && fvalue <= max; } #else return 1; #endif } /* wrapper for inRange to handle special NC_BYTE/uchar adjustment */ /* this function checks whether "value" to be casted to type "itype" is * within the range of external "xtype". */ int inRange3(const int cdf_format, const double value, const nc_type xtype, const nct_itype itype) { /* netCDF specification make a special case for type conversion between * uchar and NC_BYTE: do not check for range error. See * http://www.unidata.ucar.edu/software/netcdf/docs/data_type.html#type_conversion * The _uchar and _schar functions were introduced in netCDF-3 to eliminate * an ambiguity, and support both signed and unsigned byte data. In * netCDF-2, whether the external NC_BYTE type represented signed or * unsigned values was left up to the user. In netcdf-3, we treat NC_BYTE * as signed for the purposes of conversion to short, int, long, float, or * double. (Of course, no conversion takes place when the internal type is * signed char.) In the _uchar functions, we treat NC_BYTE as if it were * unsigned. Thus, no NC_ERANGE error can occur converting between NC_BYTE * and unsigned char. */ switch (itype) { case NCT_UCHAR: return inRange_uchar(cdf_format, value, xtype); case NCT_FLOAT: return inRange_float(value, xtype); default: break; } return inRange(value, xtype); } /* * Does x == y, where one is internal and other external (netCDF)? * Use tolerant comparison based on IEEE FLT_EPSILON or DBL_EPSILON. */ int equal(const double x, const double y, nc_type xtype, /* external data type */ nct_itype itype) { const double flt_epsilon = 1.19209290E-07; const double dbl_epsilon = 2.2204460492503131E-16; double epsilon; epsilon = xtype == NC_FLOAT || itype == NCT_FLOAT ? flt_epsilon : dbl_epsilon; if (xtype == NC_CHAR && itype == NCT_TEXT) { /* because in-memory data type char can be signed or unsigned, * type cast the value from external NC_CHAR before the comparison */ char x2 = (char) x; char y2 = (char) y; return ABS(x2-y2) <= epsilon * MAX( ABS(x2), ABS(y2)); } return ABS(x-y) <= epsilon * MAX( ABS(x), ABS(y)); } /* this function is for the APIs without itype, i.e. xtype == itype */ int equal2(const double x, const double y, nc_type xtype) /* external data type */ { const double flt_epsilon = 1.19209290E-07; const double dbl_epsilon = 2.2204460492503131E-16; double epsilon; epsilon = xtype == NC_FLOAT ? flt_epsilon : dbl_epsilon; if (xtype == NC_CHAR) { /* because in-memory data type char can be signed or unsigned, * type cast the value from external NC_CHAR before the comparison */ char x2 = (char) x; char y2 = (char) y; return ABS(x2-y2) <= epsilon * MAX( ABS(x2), ABS(y2)); } return ABS(x-y) <= epsilon * MAX( ABS(x), ABS(y)); } /* Test whether two int vectors are equal. If so return 1, else 0 */ int int_vec_eq(const int *v1, const int *v2, const int n) { int i; for (i= 0; i < n && v1[i] == v2[i]; i++) ; return i == n; } /* * Generate random integer from 0 to n-1 * Like throwing an n-sided dice marked 0, 1, 2, ..., n-1 */ size_t roll( size_t n ) { size_t r; do /* * Compute a pseudo-random value between 0.0 and 1.0, multiply * it by n-1, and then find the nearest integer. * * We don't use RAND_MAX here because not all compilation * environments define it (e.g. gcc(1) under SunOS 4.1.4). */ r = (size_t)(((rand() % 32768) / 32767.0) * (n - 1) + 0.5); while (r >= n); return r; } /* * Convert number to mixed base * * E.g. to convert 41 inches to yards, feet and inches: * size_t base[] = {1, 3, 12}; * size_t result[3]; * status = toMixedBase(41, 3, base, result); * * Author: Harvey Davies, Unidata/UCAR, Boulder, Colorado */ int toMixedBase( size_t number, /* number to be converted to mixed base */ int length, const size_t base[], /* dimensioned [length], base[0] ignored */ size_t result[]) /* dimensioned [length] */ { int i; if (length > 0) { for (i = length - 1; i > 0; i--) { if (base[i] == 0) return 1; result[i] = number % base[i]; number = number / base[i]; } result[0] = number; } return 0; } /* * Convert number from mixed base * * E.g. to convert 1 yard, 0 feet, 5 inches to inches: * size_t number[] = {1, 0, 5}; * size_t base[] = {1, 3, 12}; * inches = fromMixedBase(3, number, base); * * Author: Harvey Davies, Unidata/UCAR, Boulder, Colorado */ size_t fromMixedBase(int length, size_t number[], /* dimensioned [length] */ size_t base[]) /* dimensioned [length], base[0] ignored */ { size_t i; size_t result = 0; for (i = 1; i < length; i++) { result += number[i-1]; result *= base[i]; } if (length > 0) result += number[i-1]; return result; } /* Convert any nc_type to double */ int nc2dbl ( const nc_type xtype, const void *p, double *result) { if ( ! p ) return 2; if ( ! result ) return 3; switch (xtype) { case NC_CHAR: *result = *((char *) p); break; case NC_BYTE: *result = *((signed char *) p); break; case NC_UBYTE: *result = *((unsigned char *) p); break; case NC_SHORT: *result = *((short *) p); break; case NC_USHORT: *result = *((unsigned short *) p); break; case NC_INT: #if INT_MAX >= X_INT_MAX *result = *((int *) p); break; #else *result = *((long *) p); break; #endif case NC_UINT: #if UINT_MAX >= X_UINT_MAX *result = *((unsigned int *) p); break; #else *result = *((unsigned long *) p); break; #endif case NC_FLOAT: *result = *((float *) p); break; case NC_DOUBLE: *result = *((double *) p); break; case NC_INT64: *result = *((long long *) p); break; case NC_UINT64: *result = *((unsigned long long *) p); break; default: return 1; } return 0; } /* Convert double to any nc_type */ int dbl2nc ( const double d, const nc_type xtype, void *p) { double r; /* rounded value */ if (p == NULL) return 1; switch (xtype) { case NC_CHAR: r = floor(0.5+d); /* d is obtained from hash() which may be set to X_CHAR_MIN (0) * or X_CHAR_MAX (255). When in-memory data type char is signed * (i.e. ranged from -128 to 127), we should still allow a type * cast a unsigned value > 127 to a signed char without * reporting it as a range error. */ if ( r < X_CHAR_MIN || r > X_CHAR_MAX ) return 2; #if defined(__CHAR_UNSIGNED__) && __CHAR_UNSIGNED__ != 0 *((signed char*) p) = (signed char)r; #else *((char *) p) = (char)r; #endif break; case NC_BYTE: r = floor(0.5+d); if ( r < schar_min || r > schar_max ) return 2; *((signed char *) p) = (signed char)r; break; case NC_UBYTE: r = floor(0.5+d); if ( r < 0.0 || r > uchar_max ) return 2; *((unsigned char *) p) = (unsigned char)r; break; case NC_SHORT: r = floor(0.5+d); if ( r < short_min || r > short_max ) return 2; *((short *) p) = (short)r; break; case NC_USHORT: r = floor(0.5+d); if ( r < 0.0 || r > ushort_max ) return 2; *((unsigned short *) p) = (unsigned short)r; break; case NC_INT: r = floor(0.5+d); if ( r < long_min || r > long_max ) return 2; #if INT_MAX >= X_INT_MAX *((int *) p) = (int)r; #else *((long *) p) = (long)r; #endif break; case NC_UINT: r = floor(0.5+d); if ( r < 0.0 || r > uint_max ) return 2; #if UINT_MAX >= X_UINT_MAX *((unsigned int *) p) = (unsigned int)r; #else *((unsigned long *) p) = (unsigned long)r; #endif break; case NC_FLOAT: if ( fabs(d) > float_max ) return 2; *((float *) p) = (float)d; break; case NC_DOUBLE: *((double *) p) = (double)d; break; case NC_INT64: r = floor(0.5+d); if ( r < int64_min || r > int64_max ) return 2; *((long long *) p) = (long long)r; break; case NC_UINT64: r = floor(0.5+d); if ( r < 0.0 || r > uint64_max ) return 2; *((unsigned long long *) p) = (unsigned long long)r; break; default: return 1; } return 0; } #define FUZZ (1.19209290E-07) #ifdef USE_EXTREME_NUMBERS /* Generate data values as function of type, rank (-1 for attribute), index */ double hash( const nc_type xtype, const int rank, const size_t *index ) { double base; double result; int d; /* index of dimension */ /* If vector then elements 0 & 1 are min & max. Elements 2 & 3 are */ /* just < min & > max (except for NC_CHAR & NC_DOUBLE) */ if (abs(rank) == 1 && index[0] <= 3) { switch (index[0]) { case 0: switch (xtype) { case NC_CHAR: return X_CHAR_MIN; case NC_BYTE: return X_BYTE_MIN; case NC_SHORT: return X_SHORT_MIN; case NC_INT: return X_INT_MIN; case NC_FLOAT: return X_FLOAT_MIN; case NC_DOUBLE: return X_DOUBLE_MIN; case NC_UBYTE: return 0; case NC_USHORT: return 0; case NC_UINT: return 0; case NC_INT64: return X_INT_MIN - 128.0; /* slight smaller than INT_MIN */ case NC_UINT64: return 0; default: assert(0); } case 1: switch (xtype) { case NC_CHAR: return X_CHAR_MAX; case NC_BYTE: return X_BYTE_MAX; case NC_SHORT: return X_SHORT_MAX; case NC_INT: return X_INT_MAX; case NC_FLOAT: return X_FLOAT_MAX; case NC_DOUBLE: return X_DOUBLE_MAX; case NC_UBYTE: return X_UCHAR_MAX; case NC_USHORT: return X_USHORT_MAX; case NC_UINT: return X_UINT_MAX; case NC_INT64: return X_INT_MAX + 128.0; /* slightly bigger than INT_MAX */ case NC_UINT64: return X_UINT_MAX + 128.0; /* slightly bigger than UINT_MAX */ default: assert(0); } case 2: switch (xtype) { case NC_CHAR: return 'A'; case NC_BYTE: return X_BYTE_MIN-1.0; case NC_SHORT: return X_SHORT_MIN-1.0; case NC_INT: return X_INT_MIN-1.0; case NC_FLOAT: return X_FLOAT_MIN * (1.0 + FUZZ); case NC_DOUBLE: return -1.0; case NC_UBYTE: return -1.0; case NC_USHORT: return -1.0; case NC_UINT: return -1.0; case NC_INT64: return -1.0; /* skip test */ case NC_UINT64: return -1.0; default: assert(0); } case 3: switch (xtype) { case NC_CHAR: return 'Z'; case NC_BYTE: return X_BYTE_MAX+1.0; case NC_SHORT: return X_SHORT_MAX+1.0; case NC_INT: return X_INT_MAX+1.0; case NC_FLOAT: return X_FLOAT_MAX * (1.0 + FUZZ); case NC_DOUBLE: return 1.0; case NC_UBYTE: return X_UCHAR_MAX +1.0; case NC_USHORT: return X_USHORT_MAX+1.0; case NC_UINT: return X_UINT_MAX +1.0; case NC_INT64: return 1.0; /* skip test */ case NC_UINT64: return 1.0; /* skip test */ default: assert(0); } } } else { switch (xtype) { case NC_CHAR: base = 2; break; case NC_BYTE: base = -2; break; case NC_SHORT: base = -5; break; case NC_INT: base = -20; break; case NC_FLOAT: base = -9; break; case NC_DOUBLE: base = -10; break; /* not sure what right values are */ case NC_UBYTE: base = 2; break; case NC_USHORT: base = 5; break; case NC_UINT: base = 20; break; case NC_INT64: base = -20; break; case NC_UINT64: base = 20; break; default: assert(0); } result = rank < 0 ? base * 7 : base * (rank + 1); for (d = 0; d < abs(rank); d++) result = base * (result + index[d]); } return result; } #else /* USE_EXTREME_NUMBERS */ #define SANE_SHORT 3333 #define SANE_INT 2222 #define SANE_FLOAT 300.0 #define SANE_DOUBLE 1000.0 /* Generate data values as function of type, rank (-1 for attribute), index */ double hash( const nc_type xtype, const int rank, const size_t *index ) { double base; double result; int d; /* index of dimension */ /* If vector then elements 0 & 1 are min & max. Elements 2 & 3 are */ /* just < min & > max (except for NC_CHAR & NC_DOUBLE) */ if (abs(rank) == 1 && index[0] <= 3) { switch (index[0]) { case 0: switch (xtype) { case NC_CHAR: return X_CHAR_MIN; case NC_BYTE: return X_BYTE_MIN; case NC_SHORT: return SANE_SHORT; case NC_INT: return SANE_INT; case NC_FLOAT: return SANE_FLOAT; case NC_DOUBLE: return SANE_DOUBLE; case NC_UBYTE: return 0; case NC_USHORT: return 0; case NC_UINT: return 0; case NC_INT64: return X_INT_MIN - 128.0; /* slight smaller than INT_MIN */ case NC_UINT64: return 0; default: assert(0); } case 1: switch (xtype) { case NC_CHAR: return X_CHAR_MAX; case NC_BYTE: return X_BYTE_MAX; case NC_SHORT: return SANE_SHORT; case NC_INT: return SANE_INT; case NC_FLOAT: return SANE_FLOAT; case NC_DOUBLE: return SANE_DOUBLE; case NC_UBYTE: return X_UCHAR_MAX; case NC_USHORT: return X_USHORT_MAX; case NC_UINT: return X_UINT_MAX; case NC_INT64: return X_INT_MAX + 128.0; /* slightly bigger than INT_MAX */ case NC_UINT64: return X_UINT_MAX + 128.0; /* slightly bigger than UINT_MAX */ default: assert(0); } case 2: switch (xtype) { case NC_CHAR: return 'A'; case NC_BYTE: return X_BYTE_MIN-1.0; case NC_SHORT: return SANE_SHORT-1.0; case NC_INT: return SANE_INT-1.0; case NC_FLOAT: return SANE_FLOAT * (1.0 + FUZZ); case NC_DOUBLE: return -1.0; case NC_UBYTE: return -1.0; case NC_USHORT: return -1.0; case NC_UINT: return -1.0; case NC_INT64: return -1.0; /* skip test */ case NC_UINT64: return -1.0; default: assert(0); } case 3: switch (xtype) { case NC_CHAR: return 'Z'; case NC_BYTE: return X_BYTE_MAX+1.0; case NC_SHORT: return SANE_SHORT+1.0; case NC_INT: return SANE_INT+1.0; case NC_FLOAT: return SANE_FLOAT * (1.0 + FUZZ); case NC_DOUBLE: return 1.0; case NC_UBYTE: return X_UCHAR_MAX +1.0; case NC_USHORT: return X_USHORT_MAX+1.0; case NC_UINT: return X_UINT_MAX +1.0; case NC_INT64: return 1.0; /* skip test */ case NC_UINT64: return 1.0; /* skip test */ default: assert(0); } } } else { switch (xtype) { case NC_CHAR: base = 2; break; case NC_BYTE: base = -2; break; case NC_SHORT: base = -5; break; case NC_INT: base = -20; break; case NC_FLOAT: base = -9; break; case NC_DOUBLE: base = -10; break; /* not sure what right values are */ case NC_UBYTE: base = 2; break; case NC_USHORT: base = 5; break; case NC_UINT: base = 20; break; case NC_INT64: base = -20; break; case NC_UINT64: base = 20; break; default: assert(0); } result = rank < 0 ? base * 7 : base * (rank + 1); for (d = 0; d < abs(rank); d++) result = base * (result + index[d]); } return result; } #endif /* wrapper for hash to handle special NC_BYTE/uchar adjustment */ double hash4(const int cdf_format, const nc_type xtype, const int rank, const size_t *index, const nct_itype itype) { double result; result = hash( xtype, rank, index ); /* netCDF specification make a special case for type conversion between * uchar and NC_BYTE: do not check for range error. See * http://www.unidata.ucar.edu/software/netcdf/docs/data_type.html#type_conversion * The _uchar and _schar functions were introduced in netCDF-3 to eliminate * an ambiguity, and support both signed and unsigned byte data. In * netCDF-2, whether the external NC_BYTE type represented signed or * unsigned values was left up to the user. In netcdf-3, we treat NC_BYTE * as signed for the purposes of conversion to short, int, long, float, or * double. (Of course, no conversion takes place when the internal type is * signed char.) In the _uchar functions, we treat NC_BYTE as if it were * unsigned. Thus, no NC_ERANGE error can occur converting between NC_BYTE * and unsigned char. */ if (cdf_format < NC_FORMAT_CDF5 && itype == NCT_UCHAR && xtype == NC_BYTE && result >= -128 && result < 0) result += 256; return result; } static nc_type char2type(char letter) { switch (letter) { case 'c': return NC_CHAR; case 'b': return NC_BYTE; case 's': return NC_SHORT; case 'i': return NC_INT; case 'f': return NC_FLOAT; case 'd': return NC_DOUBLE; case 'y': return NC_UBYTE; case 't': return NC_USHORT; case 'u': return NC_UINT; case 'x': return NC_INT64; case 'z': return NC_UINT64; default: assert(0); } return NC_CHAR; /* Just to keep compiler happy */ } static void init_dims(const char *digit) { int dimid; /* index of dimension */ for (dimid = 0; dimid < NDIMS; dimid++) { dim_len[dimid] = dimid == 0 ? NRECS : dimid; dim_name[dimid][0] = 'D'; dim_name[dimid][1] = digit[dimid]; dim_name[dimid][2] = '\0'; } } static void init_gatts(const char *type_letter) { int attid; for (attid = 0; attid < numGatts; attid++) { gatt_name[attid][0] = 'G'; gatt_name[attid][1] = type_letter[attid]; gatt_name[attid][2] = '\0'; gatt_len[attid] = 1 + attid; gatt_type[attid] = char2type (type_letter[attid]); } } static size_t product(int nn, const size_t *sp) { size_t result = 1; while(nn-- > 0) result *= *sp++; return result; } /* define global variables: dim_name, dim_len, var_name, var_type, var_rank, var_shape, var_natts, var_dimid, var_nels att_name, gatt_name, att_type, gatt_type, att_len, gatt_len */ void init_gvars (void) { const size_t max_dim_len[MAX_RANK] = { MAX_DIM_LEN +1, MAX_DIM_LEN, MAX_DIM_LEN }; const char type_letter[] = "cbsifdytuxz"; /* c:char, b:byte, s:short, i:int, f:float, d:double, y:ubyte, t:ushort, * u:uint, x:int64, z:uint64 */ const char digit[] = "r123456789"; int rank; int vn; /* var number */ int xtype; /* index of type */ int an; /* attribute number */ assert(sizeof(max_dim_len)/sizeof(max_dim_len[0]) >= MAX_RANK); init_dims(digit); for (vn=0; vn 0; assert (var_dimid[vn][dn] <= 9); var_name[vn][dn + 1] = digit[var_dimid[vn][dn]]; var_shape[vn][dn] = var_dimid[vn][dn] ? var_dimid[vn][dn] : NRECS; var_nels[vn] *= var_shape[vn][dn]; } } /* dn block */ } } } init_gatts(type_letter); } /* define dims defined by global variables */ void def_dims(int ncid) { int err; /* status */ int i; int dimid; /* dimension id */ for (i = 0; i < NDIMS; i++) { err = nc_def_dim(ncid, dim_name[i], i==0 ? NC_UNLIMITED : dim_len[i], &dimid); IF (err) error("nc_def_dim: %s", nc_strerror(err)); } } /* define vars defined by global variables */ void def_vars(int ncid) { int err; /* status */ int i; int var_id; for (i = 0; i < numVars; i++) { err = nc_def_var(ncid, var_name[i], var_type[i], var_rank[i], var_dimid[i], &var_id); IF (err) error("nc_def_var: %s", nc_strerror(err)); } } /* put attributes defined by global variables */ void put_atts(int ncid) { int err; /* status */ int i; size_t k; int j; /* index of attribute */ int allInRange; double att[MAX_NELS]; char catt[MAX_NELS]; for (i = -1; i < numVars; i++) { for (j = 0; j < NATTS(i); j++) { if (ATT_TYPE(i,j) == NC_CHAR) { for (k = 0; k < ATT_LEN(i,j); k++) { catt[k] = (char) hash(ATT_TYPE(i,j), -1, &k); } err = nc_put_att_text(ncid, i, ATT_NAME(i,j), ATT_LEN(i,j), catt); IF (err) error("nc_put_att_text: %s", nc_strerror(err)); } else { for (allInRange = 1, k = 0; k < ATT_LEN(i,j); k++) { att[k] = hash(ATT_TYPE(i,j), -1, &k); allInRange = allInRange && inRange(att[k], ATT_TYPE(i,j)); } err = nc_put_att_double(ncid, i, ATT_NAME(i,j), ATT_TYPE(i,j), ATT_LEN(i,j), att); if (allInRange) { IF (err) error("nc_put_att_double: %s", nc_strerror(err)); } else { IF (err != NC_ERANGE) error("type-conversion range error: status = %d", err); } } } } } /* put variables defined by global variables */ void put_vars(int ncid) { size_t start[MAX_RANK]; size_t index[MAX_RANK]; int err; /* status */ int i; size_t j; double value[MAX_NELS]; char text[MAX_NELS]; int allInRange; for (j = 0; j < MAX_RANK; j++) start[j] = 0; for (i = 0; i < numVars; i++) { for (allInRange = 1, j = 0; j < var_nels[i]; j++) { err = toMixedBase(j, var_rank[i], var_shape[i], index); IF (err) error("toMixedBase"); if (var_name[i][0] == 'c') { text[j] = (char) hash(var_type[i], var_rank[i], index); } else { value[j] = hash(var_type[i], var_rank[i], index); allInRange = allInRange && inRange(value[j], var_type[i]); } } if (var_name[i][0] == 'c') { err = nc_put_vara_text(ncid, i, start, var_shape[i], text); IF (err) error("nc_put_vara_text: %s", nc_strerror(err)); } else { err = nc_put_vara_double(ncid, i, start, var_shape[i], value); if (allInRange) { IF (err) error("nc_put_vara_double: %s", nc_strerror(err)); } else { IF (err != NC_ERANGE) error("type-conversion range error: status = %d", err); } } } } /* Create & write all of specified file using global variables */ void write_file(char *filename) { int ncid; /* netCDF id */ int err; /* status */ err = file_create(filename, NC_CLOBBER, &ncid); IF (err) error("nc_create: %s", nc_strerror(err)); def_dims(ncid); def_vars(ncid); put_atts(ncid); err = nc_enddef(ncid); IF (err) error("nc_enddef: %s", nc_strerror(err)); #ifdef USE_PNETCDF { int i,format; nc_inq_format_extended(ncid, &format, NULL); if (format == NC_FORMATX_PNETCDF) { for (i = 0; i < numVars; i++) { err = nc_var_par_access(ncid, i, NC_COLLECTIVE); IF (err) error("nc_var_par_access: %s", nc_strerror(err)); } }} #endif put_vars(ncid); err = nc_close (ncid); IF (err) error("nc_close: %s", nc_strerror(err)); } /* * check dimensions of specified file have expected name & length */ void check_dims(int ncid) { char name[NC_MAX_NAME]; size_t length; int i; int err; /* status */ for (i = 0; i < NDIMS; i++) { err = nc_inq_dim(ncid, i, name, &length); IF (err) error("nc_inq_dim: %s", nc_strerror(err)); IF (strcmp(name, dim_name[i]) != 0) error("Unexpected name of dimension %d: '%s', expected: '%s'", i, name, dim_name[i]); IF (length != dim_len[i]) error("Unexpected length %d of dimension %d, expected %zu", length, i, dim_len[i]); } } /* * check variables of specified file have expected name, type, shape & values */ void check_vars(int ncid) { size_t index[MAX_RANK]; char text, name[NC_MAX_NAME]; int i, err; /* status */ size_t j; int nok = 0; /* count of valid comparisons */ int isChar, ndims, dimids[MAX_RANK]; double value, expect; nc_type xtype; size_t length; for (i = 0; i < numVars; i++) { isChar = var_type[i] == NC_CHAR; err = nc_inq_var(ncid, i, name, &xtype, &ndims, dimids, NULL); IF (err) error("nc_inq_var: %s", nc_strerror(err)); IF (strcmp(name, var_name[i]) != 0) error("Unexpected var_name"); IF (xtype != var_type[i]) error("Unexpected type"); IF (ndims != var_rank[i]) error("Unexpected rank"); for (j = 0; j < ndims; j++) { err = nc_inq_dim(ncid, dimids[j], 0, &length); IF (err) error("nc_inq_dim: %s", nc_strerror(err)); IF (length != var_shape[i][j]) error("Unexpected shape"); } for (j = 0; j < var_nels[i]; j++) { err = toMixedBase(j, var_rank[i], var_shape[i], index); IF (err) error("error in toMixedBase 2"); expect = hash( var_type[i], var_rank[i], index ); if (isChar) { err = nc_get_var1_text(ncid, i, index, &text); IF (err) error("nc_get_var1_text: %s", nc_strerror(err)); IF (text != (char)expect) { error("Var %s [%lu] value read %hhd not that expected %g ", var_name[i], j, text, expect); print_n_size_t(var_rank[i], index); } else { nok++; } } else { err = nc_get_var1_double(ncid, i, index, &value); if (inRange(expect,var_type[i])) { IF (err) { error("nc_get_var1_double: %s", nc_strerror(err)); } else { IF (!equal(value,expect,var_type[i], NCT_DOUBLE)) { error("Var %s [%lu] value read %g not that expected %g ", var_name[i], j, value, expect); print_n_size_t(var_rank[i], index); } else { nok++; } } } } } } print_nok(nok); } /* * check attributes of specified file have expected name, type, length & values */ void check_atts(int ncid) { int err; /* status */ int i; int j; size_t k; nc_type xtype; char name[NC_MAX_NAME]; size_t length; char text[MAX_NELS]; double value[MAX_NELS]; double expect; int nok = 0; /* count of valid comparisons */ for (i = -1; i < numVars; i++) { for (j = 0; j < NATTS(i); j++) { err = nc_inq_attname(ncid, i, j, name); IF (err) error("nc_inq_attname: %s", nc_strerror(err)); IF (strcmp(name, ATT_NAME(i,j)) != 0) error("nc_inq_attname: unexpected name"); err = nc_inq_att(ncid, i, name, &xtype, &length); IF (err) error("nc_inq_att: %s", nc_strerror(err)); IF (xtype != ATT_TYPE(i,j)) error("nc_inq_att: unexpected type"); IF (length != ATT_LEN(i,j)) error("nc_inq_att: unexpected length"); if (xtype == NC_CHAR) { err = nc_get_att_text(ncid, i, name, text); IF (err) error("nc_get_att_text: %s", nc_strerror(err)); for (k = 0; k < ATT_LEN(i,j); k++) { expect = hash(xtype, -1, &k); IF (text[k] != (char)expect) { error("nc_get_att_text: unexpected value"); } else { nok++; } } } else { err = nc_get_att_double(ncid, i, name, value); for (k = 0; k < ATT_LEN(i,j); k++) { expect = hash(xtype, -1, &k); if (inRange(expect,ATT_TYPE(i,j))) { IF (err) error("nc_get_att_double: %s", nc_strerror(err)); IF (!equal(value[k], expect, ATT_TYPE(i,j), NCT_DOUBLE)) { error("Att value read not that expected"); } else { nok++; } } } } } } print_nok(nok); } /* Check file (dims, vars, atts) corresponds to global variables */ void check_file(char *filename) { int ncid; /* netCDF id */ int err; /* status */ err = file_open(filename, NC_NOWRITE, &ncid); IF (err) { error("nc_open: %s", nc_strerror(err)); } else { check_dims(ncid); check_vars(ncid); check_atts(ncid); err = nc_close (ncid); IF (err) error("nc_close: %s", nc_strerror(err)); } } /* TODO: Maybe this function belongs in the netcdf library. */ const char * s_nc_type(nc_type xtype) { switch((int)xtype){ case NC_CHAR: return "NC_CHAR"; case NC_BYTE: return "NC_BYTE"; case NC_UBYTE: return "NC_UBYTE"; case NC_SHORT: return "NC_SHORT"; case NC_USHORT: return "NC_USHORT"; case NC_INT: return "NC_INT"; case NC_UINT: return "NC_UINT"; case NC_FLOAT: return "NC_FLOAT"; case NC_DOUBLE: return "NC_DOUBLE"; case NC_INT64: return "NC_INT64"; case NC_UINT64: return "NC_UINT64"; } return ""; } int file_create(const char *filename, int cmode, int *ncid) { int err; #ifdef USE_PNETCDF /* get the default file format */ int default_format; nc_set_default_format(NC_FORMAT_CLASSIC, &default_format); /* set it back to the default */ nc_set_default_format(default_format, NULL); if (default_format == NC_FORMAT_CLASSIC || default_format == NC_FORMAT_64BIT_OFFSET || default_format == NC_FORMAT_64BIT_DATA) err = nc_create_par(filename, cmode|NC_PNETCDF, MPI_COMM_WORLD, MPI_INFO_NULL, ncid); else #endif err = nc_create(filename, cmode, ncid); return err; } int file__create(const char *filename, int cmode, size_t initialsz, size_t *bufrsizehintp, int *ncid) { int err; #ifdef USE_PNETCDF /* get the default file format */ int default_format; err = nc_set_default_format(NC_FORMAT_CLASSIC, &default_format); /* set it back to the default */ err = nc_set_default_format(default_format, NULL); if (default_format == NC_FORMAT_CLASSIC || default_format == NC_FORMAT_64BIT_OFFSET || default_format == NC_FORMAT_64BIT_DATA) err = nc_create_par(filename, cmode|NC_PNETCDF, MPI_COMM_WORLD, MPI_INFO_NULL, ncid); else #endif err = nc__create(filename, cmode, initialsz, bufrsizehintp, ncid); return err; } int file_open(const char *filename, int omode, int *ncid) { int err; #ifdef USE_PNETCDF /* get the default file format */ int default_format; err = nc_set_default_format(NC_FORMAT_CLASSIC, &default_format); /* set it back to the default */ err = nc_set_default_format(default_format, NULL); if (default_format == NC_FORMAT_CLASSIC || default_format == NC_FORMAT_64BIT_OFFSET || default_format == NC_FORMAT_64BIT_DATA) err = nc_open_par(filename, omode|NC_PNETCDF, MPI_COMM_WORLD, MPI_INFO_NULL, ncid); else #endif err = nc_open(filename, omode, ncid); return err; } #ifdef USE_PNETCDF #include /* to include PnetCDF error codes */ #endif char* nc_err_code_name(int err) { static char unknown_str[32]; if (err > 0) { /* system error */ const char *cp = (const char *) strerror(err); if (cp == NULL) sprintf(unknown_str,"Unknown error code %d",err); else sprintf(unknown_str,"Error code %d (%s)",err,cp); return unknown_str; } switch (err) { case (NC_NOERR): return "NC_NOERR"; case (NC_EBADID): return "NC_EBADID"; case (NC_ENFILE): return "NC_ENFILE"; case (NC_EEXIST): return "NC_EEXIST"; case (NC_EINVAL): return "NC_EINVAL"; case (NC_EPERM): return "NC_EPERM"; case (NC_ENOTINDEFINE): return "NC_ENOTINDEFINE"; case (NC_EINDEFINE): return "NC_EINDEFINE"; case (NC_EINVALCOORDS): return "NC_EINVALCOORDS"; case (NC_EMAXDIMS): return "NC_EMAXDIMS"; /* not enforced after 4.5.0 */ case (NC_ENAMEINUSE): return "NC_ENAMEINUSE"; case (NC_ENOTATT): return "NC_ENOTATT"; case (NC_EMAXATTS): return "NC_EMAXATTS"; /* not enforced after 4.5.0 */ case (NC_EBADTYPE): return "NC_EBADTYPE"; case (NC_EBADDIM): return "NC_EBADDIM"; case (NC_EUNLIMPOS): return "NC_EUNLIMPOS"; case (NC_EMAXVARS): return "NC_EMAXVARS"; /* not enforced after 4.5.0 */ case (NC_ENOTVAR): return "NC_ENOTVAR"; case (NC_EGLOBAL): return "NC_EGLOBAL"; case (NC_ENOTNC): return "NC_ENOTNC"; case (NC_ESTS): return "NC_ESTS"; case (NC_EMAXNAME): return "NC_EMAXNAME"; case (NC_EUNLIMIT): return "NC_EUNLIMIT"; case (NC_ENORECVARS): return "NC_ENORECVARS"; case (NC_ECHAR): return "NC_ECHAR"; case (NC_EEDGE): return "NC_EEDGE"; case (NC_ESTRIDE): return "NC_ESTRIDE"; case (NC_EBADNAME): return "NC_EBADNAME"; case (NC_ERANGE): return "NC_ERANGE"; case (NC_ENOMEM): return "NC_ENOMEM"; case (NC_EVARSIZE): return "NC_EVARSIZE"; case (NC_EDIMSIZE): return "NC_EDIMSIZE"; case (NC_ETRUNC): return "NC_ETRUNC"; case (NC_EAXISTYPE): return "NC_EAXISTYPE"; case (NC_EDAP): return "NC_EDAP"; case (NC_ECURL): return "NC_ECURL"; case (NC_EIO): return "NC_EIO"; case (NC_ENODATA): return "NC_ENODATA"; case (NC_EDAPSVC): return "NC_EDAPSVC"; case (NC_EDAS): return "NC_EDAS"; case (NC_EDDS): return "NC_EDDS"; case (NC_EDATADDS): return "NC_EDATADDS"; case (NC_EDAPURL): return "NC_EDAPURL"; case (NC_EDAPCONSTRAINT): return "NC_EDAPCONSTRAINT"; case (NC_ETRANSLATION): return "NC_ETRANSLATION"; case (NC_EACCESS): return "NC_EACCESS"; case (NC_EAUTH): return "NC_EAUTH"; case (NC_ENOTFOUND): return "NC_ENOTFOUND"; case (NC_ECANTREMOVE): return "NC_ECANTREMOVE"; case (NC_EHDFERR): return "NC_EHDFERR"; case (NC_ECANTREAD): return "NC_ECANTREAD"; case (NC_ECANTWRITE): return "NC_ECANTWRITE"; case (NC_ECANTCREATE): return "NC_ECANTCREATE"; case (NC_EFILEMETA): return "NC_EFILEMETA"; case (NC_EDIMMETA): return "NC_EDIMMETA"; case (NC_EATTMETA): return "NC_EATTMETA"; case (NC_EVARMETA): return "NC_EVARMETA"; case (NC_ENOCOMPOUND): return "NC_ENOCOMPOUND"; case (NC_EATTEXISTS): return "NC_EATTEXISTS"; case (NC_ENOTNC4): return "NC_ENOTNC4"; case (NC_ESTRICTNC3): return "NC_ESTRICTNC3"; case (NC_ENOTNC3): return "NC_ENOTNC3"; case (NC_ENOPAR): return "NC_ENOPAR"; case (NC_EPARINIT): return "NC_EPARINIT"; case (NC_EBADGRPID): return "NC_EBADGRPID"; case (NC_EBADTYPID): return "NC_EBADTYPID"; case (NC_ETYPDEFINED): return "NC_ETYPDEFINED"; case (NC_EBADFIELD): return "NC_EBADFIELD"; case (NC_EBADCLASS): return "NC_EBADCLASS"; case (NC_EMAPTYPE): return "NC_EMAPTYPE"; case (NC_ELATEFILL): return "NC_ELATEFILL"; case (NC_ELATEDEF): return "NC_ELATEDEF"; case (NC_EDIMSCALE): return "NC_EDIMSCALE"; case (NC_ENOGRP): return "NC_ENOGRP"; case (NC_ESTORAGE): return "NC_ESTORAGE"; case (NC_EBADCHUNK): return "NC_EBADCHUNK"; case (NC_ENOTBUILT): return "NC_ENOTBUILT"; case (NC_EDISKLESS): return "NC_EDISKLESS"; case (NC_ECANTEXTEND): return "NC_ECANTEXTEND"; case (NC_EMPI): return "NC_EMPI"; // case (NC_EURL): return "NC_EURL"; // case (NC_ECONSTRAINT): return "NC_ECONSTRAINT"; #ifdef USE_PNETCDF case (NC_ESMALL): return "NC_ESMALL"; case (NC_ENOTINDEP): return "NC_ENOTINDEP"; case (NC_EINDEP): return "NC_EINDEP"; case (NC_EFILE): return "NC_EFILE"; case (NC_EREAD): return "NC_EREAD"; case (NC_EWRITE): return "NC_EWRITE"; case (NC_EOFILE): return "NC_EOFILE"; case (NC_EMULTITYPES): return "NC_EMULTITYPES"; case (NC_EIOMISMATCH): return "NC_EIOMISMATCH"; case (NC_ENEGATIVECNT): return "NC_ENEGATIVECNT"; case (NC_EUNSPTETYPE): return "NC_EUNSPTETYPE"; case (NC_EINVAL_REQUEST): return "NC_EINVAL_REQUEST"; case (NC_EAINT_TOO_SMALL): return "NC_EAINT_TOO_SMALL"; case (NC_ENOENT): return "NC_ENOENT"; #ifdef NC_EMULTIDEFINE case (NC_EMULTIDEFINE): return "NC_EMULTIDEFINE"; #endif #if PNETCDF_VERSION_MAJOR>=1 && PNETCDF_VERSION_MINOR>=3 case (NC_ENOTSUPPORT): return "NC_ENOTSUPPORT"; case (NC_ENULLBUF): return "NC_ENULLBUF"; case (NC_EPREVATTACHBUF): return "NC_EPREVATTACHBUF"; case (NC_ENULLABUF): return "NC_ENULLABUF"; case (NC_EPENDINGBPUT): return "NC_EPENDINGBPUT"; case (NC_EINSUFFBUF): return "NC_EINSUFFBUF"; #endif #if PNETCDF_VERSION_MAJOR>=1 && PNETCDF_VERSION_MINOR>=4 case (NC_EINTOVERFLOW): return "NC_EINTOVERFLOW"; case (NC_EMULTIDEFINE_OMODE): return "NC_EMULTIDEFINE_OMODE"; case (NC_EMULTIDEFINE_DIM_NUM): return "NC_EMULTIDEFINE_DIM_NUM"; case (NC_EMULTIDEFINE_DIM_SIZE): return "NC_EMULTIDEFINE_DIM_SIZE"; case (NC_EMULTIDEFINE_DIM_NAME): return "NC_EMULTIDEFINE_DIM_NAME"; case (NC_EMULTIDEFINE_VAR_NUM): return "NC_EMULTIDEFINE_VAR_NUM"; case (NC_EMULTIDEFINE_VAR_NAME): return "NC_EMULTIDEFINE_VAR_NAME"; case (NC_EMULTIDEFINE_VAR_NDIMS): return "NC_EMULTIDEFINE_VAR_NDIMS"; case (NC_EMULTIDEFINE_VAR_DIMIDS): return "NC_EMULTIDEFINE_VAR_DIMIDS"; case (NC_EMULTIDEFINE_VAR_TYPE): return "NC_EMULTIDEFINE_VAR_TYPE"; case (NC_EMULTIDEFINE_VAR_LEN): return "NC_EMULTIDEFINE_VAR_LEN"; case (NC_EMULTIDEFINE_NUMRECS): return "NC_EMULTIDEFINE_NUMRECS"; case (NC_EMULTIDEFINE_VAR_BEGIN): return "NC_EMULTIDEFINE_VAR_BEGIN"; case (NC_EMULTIDEFINE_ATTR_NUM): return "NC_EMULTIDEFINE_ATTR_NUM"; case (NC_EMULTIDEFINE_ATTR_SIZE): return "NC_EMULTIDEFINE_ATTR_SIZE"; case (NC_EMULTIDEFINE_ATTR_NAME): return "NC_EMULTIDEFINE_ATTR_NAME"; case (NC_EMULTIDEFINE_ATTR_TYPE): return "NC_EMULTIDEFINE_ATTR_TYPE"; case (NC_EMULTIDEFINE_ATTR_LEN): return "NC_EMULTIDEFINE_ATTR_LEN"; case (NC_EMULTIDEFINE_ATTR_VAL): return "NC_EMULTIDEFINE_ATTR_VAL"; #endif #if PNETCDF_VERSION_MAJOR>=1 && PNETCDF_VERSION_MINOR>=5 case (NC_ENOTENABLED): return "NC_ENOTENABLED"; case (NC_EBAD_FILE): return "NC_EBAD_FILE"; case (NC_ENO_SPACE): return "NC_ENO_SPACE"; case (NC_EQUOTA): return "NC_EQUOTA"; case (NC_EMULTIDEFINE_FNC_ARGS): return "NC_EMULTIDEFINE_FNC_ARGS"; #endif #if PNETCDF_VERSION_MAJOR>=1 && PNETCDF_VERSION_MINOR>=6 case (NC_EINVAL_CMODE): return "NC_EINVAL_CMODE"; case (NC_ENULLSTART): return "NC_ENULLSTART"; case (NC_ENULLCOUNT): return "NC_ENULLCOUNT"; case (NC_ETYPESIZE_MISMATCH): return "NC_ETYPESIZE_MISMATCH"; case (NC_ETYPESIZE): return "NC_ETYPESIZE"; case (NC_ETYPE_MISMATCH): return "NC_ETYPE_MISMATCH"; case (NC_ESTRICTCDF2): return "NC_ESTRICTCDF2"; #endif #if PNETCDF_VERSION_MAJOR>=1 && PNETCDF_VERSION_MINOR>=7 case (NC_ENOTRECVAR): return "NC_ENOTRECVAR"; case (NC_ENOTFILL): return "NC_ENOTFILL"; case (NC_EMULTIDEFINE_FILL_MODE): return "NC_EMULTIDEFINE_FILL_MODE"; case (NC_EMULTIDEFINE_VAR_FILL_MODE): return "NC_EMULTIDEFINE_VAR_FILL_MODE"; case (NC_EMULTIDEFINE_VAR_FILL_VALUE): return "NC_EMULTIDEFINE_VAR_FILL_VALUE"; #endif #if PNETCDF_VERSION_MAJOR>=1 && PNETCDF_VERSION_MINOR>=8 case (NC_EPENDING): return "NC_EPENDING"; case (NC_EINVAL_OMODE): return "NC_EINVAL_OMODE"; case (NC_EMULTIDEFINE_CMODE): return "NC_EMULTIDEFINE_CMODE"; #endif #endif default: sprintf(unknown_str,"Unknown code %d",err); } return unknown_str; } int test_nc_against_pnetcdf(void) { #ifdef USE_PNETCDF int ncid; /* netCDF id */ int err; /* status */ /* Using netCDF library to create file */ err = nc_create(scratch, NC_CLOBBER, &ncid); IF (err != NC_NOERR) error("nc_create: %s", nc_strerror(err)); def_dims(ncid); def_vars(ncid); put_atts(ncid); err = nc_enddef(ncid); IF (err != NC_NOERR) error("nc_enddef: %s", nc_strerror(err)); put_vars(ncid); err = nc_close (ncid); IF (err != NC_NOERR) error("nc_close: %s", nc_strerror(err)); /* Using PnetCDF library to check file */ err = nc_open_par(scratch, NC_NOWRITE|NC_PNETCDF, MPI_COMM_WORLD, MPI_INFO_NULL, &ncid); IF (err != NC_NOERR) error("nc_open_par: %s", nc_strerror(err)); check_dims(ncid); check_vars(ncid); check_atts(ncid); err = nc_close (ncid); IF (err != NC_NOERR) error("nc_close: %s", nc_strerror(err)); /* Using PnetCDF library to create file */ err = nc_create_par(scratch, NC_PNETCDF, MPI_COMM_WORLD, MPI_INFO_NULL, &ncid); IF (err != NC_NOERR) error("nc_create_par: %s", nc_strerror(err)); def_dims(ncid); def_vars(ncid); put_atts(ncid); err = nc_enddef(ncid); IF (err != NC_NOERR) error("nc_enddef: %s", nc_strerror(err)); put_vars(ncid); err = nc_close (ncid); IF (err != NC_NOERR) error("nc_close: %s", nc_strerror(err)); /* Using NetCDF library to check file */ err = nc_open(scratch, NC_NOWRITE, &ncid); IF (err != NC_NOERR) error("nc_open: %s", nc_strerror(err)); check_dims(ncid); check_vars(ncid); check_atts(ncid); err = nc_close (ncid); IF (err != NC_NOERR) error("nc_close: %s", nc_strerror(err)); err = nc_delete(scratch); IF (err != NC_NOERR) error("remove of %s failed", scratch); #endif return 1; }