/* This is part of the netCDF package. Copyright 2005 University Corporation for Atmospheric Research/Unidata See COPYRIGHT file for conditions of use. Test netcdf-4 variables. $Id: tst_files2.c,v 1.11 2010/01/31 19:00:44 ed Exp $ */ #include #include "netcdf.h" #include #include #include /* Extra high precision time info. */ #define MAX_LEN 30 #define TMP_FILE_NAME "tst_files2_tmp.out" #define FILE_NAME "tst_files2_1.nc" #define MILLION 1000000 void *last_sbrk; /* This function uses the ps command to find the amount of memory in use by the process. From the ps man page: size SZ approximate amount of swap space that would be required if the process were to dirty all writable pages and then be swapped out. This number is very rough! */ int get_mem_used1(int *mem_used) { char cmd[NC_MAX_NAME + 1]; char blob[MAX_LEN + 1] = ""; FILE *fp; int num_char; /* Run the ps command for this process, putting output (one number) * into file TMP_FILE_NAME. */ sprintf(cmd, "ps -o size= %d > %s", getpid(), TMP_FILE_NAME); system(cmd); /* Read the results and delete temp file. */ if (!(fp = fopen(TMP_FILE_NAME, "r"))) ERR; num_char = fread(blob, MAX_LEN, 1, fp); sscanf(blob, "%d", mem_used); fclose(fp); unlink(TMP_FILE_NAME); return NC_NOERR; } void get_mem_used2(int *mem_used) { char buf[30]; FILE *pf; snprintf(buf, 30, "/proc/%u/statm", (unsigned)getpid()); pf = fopen(buf, "r"); if (pf) { unsigned size; /* total program size */ unsigned resident;/* resident set size */ unsigned share;/* shared pages */ unsigned text;/* text (code) */ unsigned lib;/* library */ unsigned data;/* data/stack */ /*unsigned dt; dirty pages (unused in Linux 2.6)*/ fscanf(pf, "%u %u %u %u %u %u", &size, &resident, &share, &text, &lib, &data); *mem_used = data; } else *mem_used = -1; fclose(pf); } void get_mem_used3(int *mem_used) { void *vp; vp = sbrk(0); *mem_used = ((char *)vp - (char *)last_sbrk)/1024; } /* Create a sample file, with num_vars 3D or 4D variables, with dim * lens of dim_len size. */ #define MAX_DIMS 4 int create_sample_file(char *file_name, int ndims, int *dim_len, int num_vars, int mode, int num_recs) { int ncid, dimids[MAX_DIMS], *varids; char varname[NC_MAX_NAME + 1]; char dim_name[NC_MAX_NAME + 1]; float *data_out; size_t start[MAX_DIMS], count[MAX_DIMS]; int slab_nelems; int i, d, ret; if (ndims != MAX_DIMS && ndims != MAX_DIMS - 1) ERR_RET; /* Create a file. */ ret = nc_create(file_name, NC_NOCLOBBER|mode, &ncid); if (ret == NC_EEXIST) return NC_NOERR; else if (ret) ERR_RET; /* Initialize sample data. Slab of data will be full extent of last * two dimensions. */ slab_nelems = dim_len[ndims - 1] * dim_len[ndims - 2]; if (!(data_out = malloc(slab_nelems * sizeof(float)))) ERR_RET; for (i = 0; i < slab_nelems; i++) data_out[i] = 42.42 + i; /* Create the dimensions. */ for (d = 0; d < ndims; d++) { sprintf(dim_name, "dim_%d", d); if (nc_def_dim(ncid, dim_name, dim_len[d], &dimids[d])) ERR_RET; } /* Define num_vars variables. */ if (!(varids = malloc(num_vars * sizeof(int)))) ERR_RET; for (i = 0; i < num_vars; i++) { sprintf(varname, "a_%d", i); if (nc_def_var(ncid, varname, NC_FLOAT, ndims, dimids, &varids[i])) ERR_RET; } /* Enddef required for classic files. */ if (nc_enddef(ncid)) ERR; /* Set up start/count to write slabs of data. */ for (d = 0; d < ndims; d++) { if (d < ndims - 2) count[d] = 1; else { start[d] = 0; count[d] = dim_len[d]; } } /* Now write some data to the vars in slabs. */ for (i = 0; i < num_vars; i++) { if (ndims == MAX_DIMS) { for (start[0] = 0; start[0] < (dim_len[0] ? dim_len[0] : num_recs); start[0]++) for (start[1] = 0; start[1] < dim_len[1]; start[1]++) if (nc_put_vara_float(ncid, varids[i], start, count, data_out)) ERR_RET; } else { for (start[0] = 0; start[0] < (dim_len[0] ? dim_len[0] : num_recs); start[0]++) if (nc_put_vara_float(ncid, varids[i], start, count, data_out)) ERR_RET; } } /* Free data and close file. */ free(data_out); free(varids); if (nc_close(ncid)) ERR_RET; return NC_NOERR; } int main(int argc, char **argv) { printf("\n*** Testing netcdf-4 file functions, some more.\n"); last_sbrk = sbrk(0); printf("*** testing lots of open files...\n"); { #define NUM_TRIES 6 int *ncid_in; int mem_used, mem_used2; int mem_per_file; int num_files[NUM_TRIES] = {1, 1, 1, 1, 1, 1}; char file_name[NUM_TRIES][NC_MAX_NAME + 1]; int num_vars[NUM_TRIES]; size_t cache_size[NUM_TRIES]; int mode[NUM_TRIES]; char mode_name[NUM_TRIES][8]; int ndims[NUM_TRIES]; int dim_len[NUM_TRIES][MAX_DIMS]; int dim_4d[MAX_DIMS] = {NC_UNLIMITED, 10, 1000, 1000}; char dimstr[30]; char chunkstr[30]; int num_recs[NUM_TRIES] = {1, 1, 1}; struct timeval start_time, end_time, diff_time; struct timeval close_start_time, close_end_time, close_diff_time; int open_us, close_us, create_us; size_t chunksize[MAX_DIMS]; int storage; int d, f, t; printf("dims\t\tchunks\t\tformat\tnum_files\tcache(kb)\tnum_vars\tmem(kb)\t" "open_time(us)\tclose_time(us)\tcreate_time(us)\n"); for (t = 0; t < NUM_TRIES; t++) { /* Set up filename. */ sprintf(file_name[t], "tst_files2_%d.nc", t); strcpy(mode_name[t], "netcdf4"); mode[t] = NC_NETCDF4; cache_size[t] = 16000000; num_vars[t] = 10; ndims[t] = 4; for (d = 0; d < ndims[t]; d++) dim_len[t][d] = dim_4d[d]; /* Create sample file (unless it already exists). */ if (gettimeofday(&start_time, NULL)) ERR; if (create_sample_file(file_name[t], ndims[t], dim_len[t], num_vars[t], mode[t], num_recs[t])) ERR; /* How long did it take? */ if (gettimeofday(&end_time, NULL)) ERR; if (nc4_timeval_subtract(&diff_time, &end_time, &start_time)) ERR; create_us = ((int)diff_time.tv_sec * MILLION + (int)diff_time.tv_usec); /* Change the cache settings. */ if (nc_set_chunk_cache(cache_size[t], 20000, .75)) ERR; /* We need storage for an array of ncids. */ if (!(ncid_in = malloc(num_files[t] * sizeof(int)))) ERR; /* How much memory is in use now? */ if (get_mem_used1(&mem_used)) ERR; /* get_mem_used2(&mem_used); get_mem_used3(&mem_used);*/ /* Open the first file to get chunksizes. */ if (gettimeofday(&start_time, NULL)) ERR; if (nc_open(file_name[t], 0, &ncid_in[0])) ERR; if (nc_inq_var_chunking(ncid_in[0], 0, &storage, chunksize)) ERR; /* Now reopen this file a large number of times. */ for (f = 1; f < num_files[t]; f++) if (nc_open(file_name[t], 0, &ncid_in[f])) ERR_RET; /* How long did it take per file? */ if (gettimeofday(&end_time, NULL)) ERR; if (nc4_timeval_subtract(&diff_time, &end_time, &start_time)) ERR; open_us = ((int)diff_time.tv_sec * MILLION + (int)diff_time.tv_usec); /* How much memory is in use by this process now? */ if (get_mem_used1(&mem_used2)) ERR; /* Close all netcdf files. */ if (gettimeofday(&close_start_time, NULL)) ERR; for (f = 0; f < num_files[t]; f++) if (nc_close(ncid_in[f])) ERR_RET; /* How long did it take to close all files? */ if (gettimeofday(&close_end_time, NULL)) ERR; if (nc4_timeval_subtract(&close_diff_time, &close_end_time, &close_start_time)) ERR; close_us = ((int)close_diff_time.tv_sec * MILLION + (int)close_diff_time.tv_usec); /* We're done with this. */ free(ncid_in); /* How much memory was used for each open file? */ mem_per_file = mem_used2/num_files[t]; /* Prepare the dimensions string. */ if (ndims[t] == MAX_DIMS) sprintf(dimstr, "%dx%dx%dx%d", dim_len[t][0], dim_len[t][1], dim_len[t][2], dim_len[t][3]); else sprintf(dimstr, "%dx%dx%d", dim_len[t][0], dim_len[t][1], dim_len[t][2]); /* Prepare the chunksize string. */ if (storage == NC_CHUNKED) { if (ndims[t] == MAX_DIMS) sprintf(chunkstr, "%dx%dx%dx%d", (int)chunksize[0], (int)chunksize[1], (int)chunksize[2], (int)chunksize[3]); else sprintf(chunkstr, "%dx%dx%d", (int)chunksize[0], (int)chunksize[1], (int)chunksize[2]); } else strcpy(chunkstr, "contig "); /* Output results. */ printf("%s\t%s\t%s\t%d\t\t%d\t\t%d\t\t%d\t\t%d\t\t%d\t\t%d\n", dimstr, chunkstr, mode_name[t], num_files[t], (int)(cache_size[t]/1024), num_vars[t], mem_used2, open_us, close_us, create_us); } } SUMMARIZE_ERR; printf("Test for memory consumption...\n"); { #define NUM_TRIES_100 100 int ncid, i; int mem_used, mem_used1, mem_used2; get_mem_used2(&mem_used); mem_used1 = mem_used; mem_used2 = mem_used; printf("start: memuse= %d\t%d\t%d \n",mem_used, mem_used1, mem_used2); printf("bef_open\taft_open\taft_close\tused_open\tused_closed\n"); for (i=0; i < NUM_TRIES_100; i++) { /* Open the file. NC_NOWRITE tells netCDF we want read-only access * to the file.*/ get_mem_used2(&mem_used); nc_set_chunk_cache(10,10,.5); if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; get_mem_used2(&mem_used1); /* Close the file, freeing all resources. ???? */ if (nc_close(ncid)) ERR; get_mem_used2(&mem_used2); if (mem_used2 - mem_used) printf("try %d - %d\t\t%d\t\t%d\t\t%d\t\t%d \n", i, mem_used, mem_used1, mem_used2, mem_used1 - mem_used, mem_used2 - mem_used); } } SUMMARIZE_ERR; FINAL_RESULTS; }