### # Build hdf5 dependencies and cache them in a combined directory. ### name: Run CDash Ubuntu/Linux netCDF Tests on: workflow_dispatch concurrency: group: ${{ github.workflow}}-${{ github.head_ref }} cancel-in-progress: true jobs: build-deps-cdash: runs-on: ubuntu-latest strategy: matrix: hdf5: [ 1.10.8, 1.12.2, 1.14.3 ] steps: - uses: actions/checkout@v4 - name: Install System dependencies shell: bash -l {0} run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen openssl ### # Installing libhdf5 ### - name: Cache libhdf5-${{ matrix.hdf5 }} id: cache-hdf5 uses: actions/cache@v4 with: path: ~/environments/${{ matrix.hdf5 }} key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} - name: Build libhdf5-${{ matrix.hdf5 }} if: steps.cache-hdf5.outputs.cache-hit != 'true' run: | set -x wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2 tar -jxf hdf-4.2.15.tar.bz2 pushd hdf-4.2.15 ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-hdf4-xdr make -j make install -j popd wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 pushd hdf5-${{ matrix.hdf5 }} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib make -j make install -j popd build-deps-parallel: runs-on: ubuntu-latest strategy: matrix: hdf5: [ 1.14.3 ] steps: - uses: actions/checkout@v4 - name: Install System dependencies shell: bash -l {0} run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev ### # Installing libhdf5 ### - name: Cache libhdf5-parallel-${{ matrix.hdf5 }} id: cache-hdf5 uses: actions/cache@v4 with: path: ~/environments/${{ matrix.hdf5 }} key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }} - name: Build libhdf5-${{ matrix.hdf5 }}-pnetcdf-1.12.3 if: steps.cache-hdf5.outputs.cache-hit != 'true' run: | set -x wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2 tar -jxf hdf-4.2.15.tar.bz2 pushd hdf-4.2.15 CC=mpicc ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-parallel --enable-hdf4-xdr make -j make install -j popd wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 pushd hdf5-${{ matrix.hdf5 }} CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib --enable-parallel make -j make install -j popd wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.3.tar.gz tar -zxf pnetcdf-1.12.3.tar.gz pushd pnetcdf-1.12.3 CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} make -j make install -j popd ### # Run CTest Serial Script ### nc-ctest-serial: needs: build-deps-cdash runs-on: ubuntu-latest environment: CDashCI strategy: matrix: hdf5: [ 1.10.8, 1.12.2, 1.14.3 ] steps: - uses: actions/checkout@v4 with: CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }} env: CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }} - name: Install System dependencies shell: bash -l {0} run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev ### # Set Environmental Variables ### - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV - run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV ### # Fetch Cache ### - name: Fetch HDF Cache id: cache-hdf5 uses: actions/cache@v4 with: path: ~/environments/${{ matrix.hdf5 }} key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} - name: Check Cache shell: bash -l {0} run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib - name: Run ctest serial script shell: bash -l {0} env: CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }} run: | mkdir build cd build LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 -V -S ../ctest_scripts/ctest_serial.ctest - name: Verbose Output if CTest Failure shell: bash -l {0} run: | cd build LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV if: ${{ failure() }}