### # Build hdf4, hdf5 dependencies and cache them in a combined directory. ### name: Run Ubuntu/Linux netCDF Tests on: [ pull_request ] jobs: build-deps: runs-on: ubuntu-latest strategy: matrix: hdf5: [ 1.8.21, 1.10.8, 1.12.1 ] steps: - uses: actions/checkout@v2 - name: Install System dependencies shell: bash -l {0} run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev ### # Installing libhdf4 and libhdf5 ### - name: Cache libhdf5-${{ matrix.hdf5 }} id: cache-hdf5 uses: actions/cache@v2 with: path: ~/environments/${{ matrix.hdf5 }} key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} - name: Build libhdf5-${{ matrix.hdf5 }} if: steps.cache-hdf5.outputs.cache-hit != 'true' run: | set -x wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2 tar -jxf hdf-4.2.15.tar.bz2 pushd hdf-4.2.15 ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib make -j make install -j popd wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 pushd hdf5-${{ matrix.hdf5 }} ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib make -j make install -j popd nc-autotools: needs: [ nc-cmake-tests-oneoff, nc-ac-tests-oneoff ] runs-on: ubuntu-latest strategy: matrix: hdf5: [ 1.8.21, 1.10.8, 1.12.1 ] use_nc4: [ nc3, nc4 ] use_dap: [ dap_off, dap_on ] use_nczarr: [ nczarr_off, nczarr_on ] steps: - uses: actions/checkout@v2 - name: Install System dependencies shell: bash -l {0} run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev ### # Set Environmental Variables ### - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV - run: | echo "ENABLE_HDF4=--disable-hdf4" >> $GITHUB_ENV echo "ENABLE_HDF5=--disable-hdf5" >> $GITHUB_ENV if: matrix.use_nc4 == 'nc3' - run: | echo "ENABLE_HDF4=--enable-hdf4" >> $GITHUB_ENV echo "ENABLE_HDF5=--enable-hdf5" >> $GITHUB_ENV if: matrix.use_nc4 == 'nc4' - run: echo "ENABLE_DAP=--disable-dap" >> $GITHUB_ENV if: matrix.use_dap == 'dap_off' - run: echo "ENABLE_DAP=--enable-dap" >> $GITHUB_ENV if: matrix.use_dap == 'dap_on' - run: echo "ENABLE_NCZARR=--disable-nczarr" >> $GITHUB_ENV if: matrix.use_nczarr == 'nczarr_off' - run: echo "ENABLE_NCZARR=--enable-nczarr" >> $GITHUB_ENV if: matrix.use_nczarr == 'nczarr_on' ### # Fetch Cache ### - name: Fetch HDF Cache id: cache-hdf uses: actions/cache@v2 with: path: ~/environments/${{ matrix.hdf5 }} key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} - name: Check Cache shell: bash -l {0} run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib ### # Configure and build ### - name: Run autoconf shell: bash -l {0} run: autoreconf -if - name: Configure shell: bash -l {0} run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure ${ENABLE_HDF4} ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR} if: ${{ success() }} - name: Look at config.log if error shell: bash -l {0} run: cat config.log if: ${{ failure() }} - name: Print Summary shell: bash -l {0} run: cat libnetcdf.settings - name: Build Library and Utilities shell: bash -l {0} run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j if: ${{ success() }} - name: Build Tests shell: bash -l {0} run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j if: ${{ success() }} - name: Run Tests shell: bash -l {0} run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j if: ${{ success() }} # - name: Make Distcheck # shell: bash -l {0} # run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} DISTCHECK_CONFIGURE_FLAGS="${ENABLE_HDF4} ${ENABLE_HDF5} ${ENABLE_DAP} ${ENABLE_NCZARR}" make distcheck # if: ${{ success() }} #- name: Start SSH Debug # uses: luchihoratiu/debug-via-ssh@main # with: # NGROK_AUTH_TOKEN: ${{ secrets.NGROK_AUTH_TOKEN }} # SSH_PASS: ${{ secrets.SSH_PASS }} # if: ${{ failure() }} nc-cmake: needs: [ nc-cmake-tests-oneoff, nc-ac-tests-oneoff ] runs-on: ubuntu-latest strategy: matrix: hdf5: [ 1.8.21, 1.10.8, 1.12.1 ] use_nc4: [ nc3, nc4 ] use_dap: [ dap_off, dap_on ] use_nczarr: [ nczarr_off, nczarr_on ] steps: - uses: actions/checkout@v2 - name: Install System dependencies shell: bash -l {0} run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev ### # Set Environmental Variables ### - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV - run: | echo "ENABLE_HDF4=OFF" >> $GITHUB_ENV echo "ENABLE_HDF5=OFF" >> $GITHUB_ENV if: matrix.use_nc4 == 'nc3' - run: | echo "ENABLE_HDF4=ON" >> $GITHUB_ENV echo "ENABLE_HDF5=ON" >> $GITHUB_ENV if: matrix.use_nc4 == 'nc4' - run: echo "ENABLE_DAP=OFF" >> $GITHUB_ENV if: matrix.use_dap == 'dap_off' - run: echo "ENABLE_DAP=ON" >> $GITHUB_ENV if: matrix.use_dap == 'dap_on' - run: echo "ENABLE_NCZARR=OFF" >> $GITHUB_ENV if: matrix.use_nczarr == 'nczarr_off' - run: echo "ENABLE_NCZARR=ON" >> $GITHUB_ENV if: matrix.use_nczarr == 'nczarr_on' - run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV ### # Fetch Cache ### - name: Fetch HDF Cache id: cache-hdf5 uses: actions/cache@v2 with: path: ~/environments/${{ matrix.hdf5 }} key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} - name: Check Cache shell: bash -l {0} run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib ### # Configure and build ### - name: Perform out-of-directory build shell: bash -l {0} run: | mkdir build cd build LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DENABLE_HDF4=${ENABLE_HDF4} -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=${ENABLE_DAP} -DENABLE_HDF5=${ENABLE_HDF5} -DENABLE_NCZARR=${ENABLE_NCZARR} - name: Print Summary shell: bash -l {0} run: | cd build cat libnetcdf.settings - name: Build All shell: bash -l {0} run: | cd build LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12 if: ${{ success() }} - name: Run Tests shell: bash -l {0} run: | cd build LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --verbose -j 12 . if: ${{ success() }} - name: Verbose Output if CTest Failure shell: bash -l {0} run: | cd build LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV if: ${{ failure() }} ##### # One-Off Autotools-based tests. ##### nc-ac-tests-oneoff: needs: build-deps runs-on: ubuntu-latest strategy: matrix: hdf5: [ 1.12.1 ] steps: - uses: actions/checkout@v2 - name: Install System dependencies shell: bash -l {0} run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev ### # Set Environmental Variables ### - run: echo "CFLAGS=-I${HOME}/environments/${{ matrix.hdf5 }}/include" >> $GITHUB_ENV - run: echo "LDFLAGS=-L${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV ### # Fetch Cache ### - name: Fetch HDF Cache id: cache-hdf uses: actions/cache@v2 with: path: ~/environments/${{ matrix.hdf5 }} key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} - name: Check Cache shell: bash -l {0} run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib ### # Configure and build ### - name: Run autoconf shell: bash -l {0} run: autoreconf -if - name: Configure shell: bash -l {0} run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ./configure --enable-hdf4 --enable-hdf5 --enable-dap --disable-dap-remote-tests if: ${{ success() }} - name: Look at config.log if error shell: bash -l {0} run: cat config.log if: ${{ failure() }} - name: Print Summary shell: bash -l {0} run: cat libnetcdf.settings - name: Build Library and Utilities shell: bash -l {0} run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j if: ${{ success() }} - name: Build Tests shell: bash -l {0} run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check TESTS="" -j if: ${{ success() }} - name: Run Tests shell: bash -l {0} run: CFLAGS=${CFLAGS} LDFLAGS=${LDFLAGS} LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make check -j if: ${{ success() }} ##### # One-Off CMake-based tests. ##### nc-cmake-tests-oneoff: needs: build-deps runs-on: ubuntu-latest strategy: matrix: hdf5: [ 1.12.1 ] steps: - uses: actions/checkout@v2 - name: Install System dependencies shell: bash -l {0} run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev ### # Set Environmental Variables ### - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV ### # Fetch Cache ### - name: Fetch HDF Cache id: cache-hdf5 uses: actions/cache@v2 with: path: ~/environments/${{ matrix.hdf5 }} key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} - name: Check Cache shell: bash -l {0} run: ls ${HOME}/environments && ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib ### # Configure and build ### - name: Perform out-of-directory build shell: bash -l {0} run: | mkdir build cd build LD_LIBRARY_PATH=${LD_LIBRARY_PATH} cmake .. -DENABLE_HDF4=TRUE -DCMAKE_PREFIX_PATH=${CMAKE_PREFIX_PATH} -DENABLE_DAP=TRUE -DENABLE_HDF5=TRUE -DENABLE_NCZARR=TRUE -D ENABLE_DAP_LONG_TESTS=TRUE - name: Print Summary shell: bash -l {0} run: | cd build cat libnetcdf.settings - name: Build All shell: bash -l {0} run: | cd build LD_LIBRARY_PATH=${LD_LIBRARY_PATH} make -j 12 if: ${{ success() }} - name: Run Tests shell: bash -l {0} run: | cd build LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest --output-on-failure -j 12 . if: ${{ success() }} - name: Verbose Output if CTest Failure shell: bash -l {0} run: | cd build LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV if: ${{ failure() }}