/* This is part of the netCDF package. Copyright 2018 University Corporation for Atmospheric Research/Unidata See COPYRIGHT file for conditions of use. This program does HDF5 string stuff. Here's a HDF5 sample programs: http://hdf.ncsa.uiuc.edu/training/other-ex5/sample-programs/strings.c */ #include #include "h5_err_macros.h" #include #define FILE_NAME "tst_h_strings.h5" #define DIM1_LEN 3 #define ATT_NAME "Stooge_Statements" #define GRP_NAME "Stooge_Antic_Metrics" int main() { printf("\n*** Checking HDF5 string types.\n"); printf("*** Checking scalar string attribute..."); { hid_t fileid, grpid, spaceid, typeid, attid; hid_t class; size_t type_size; htri_t is_str; const char *data = "The art of war is of vital " "importance to the State. It is a matter of life and death, a road either" "to safety or to ruin. Hence it is a subject of inquiry" "which can on no account be neglected."; char *data_in = NULL; /* Open file. */ if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gcreate(fileid, GRP_NAME, 0)) < 0) ERR; /* Create string type. */ if ((typeid = H5Tcopy(H5T_C_S1)) < 0) ERR; if (H5Tset_size(typeid, H5T_VARIABLE) < 0) ERR; /* Write an attribute of this type. */ if ((spaceid = H5Screate(H5S_SCALAR)) < 0) ERR; if ((attid = H5Acreate(grpid, ATT_NAME, typeid, spaceid, H5P_DEFAULT)) < 0) ERR; if (H5Awrite(attid, typeid, &data) < 0) ERR; /* Close up. */ if (H5Aclose(attid) < 0) ERR; if (H5Tclose(typeid) < 0) ERR; if (H5Sclose(spaceid) < 0) ERR; if (H5Gclose(grpid) < 0) ERR; if (H5Fclose(fileid) < 0) ERR; /* Now reopen the file and check it out. */ if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gopen(fileid, GRP_NAME)) < 0) ERR; if ((attid = H5Aopen_name(grpid, ATT_NAME)) < 0) ERR; if ((typeid = H5Aget_type(attid)) < 0) ERR; if ((spaceid = H5Aget_space(attid)) < 0) ERR; /* Given this type id, how would we know this is a string * attribute? */ if ((class = H5Tget_class(typeid)) < 0) ERR; if (class != H5T_STRING) ERR; if (!(type_size = H5Tget_size(typeid))) ERR; if (type_size != sizeof(char *)) ERR; if ((is_str = H5Tis_variable_str(typeid)) < 0) ERR; if (!is_str) ERR; /* Make sure this is a scalar. */ if (H5Sget_simple_extent_type(spaceid) != H5S_SCALAR) ERR; /* Read the attribute. */ if (H5Aread(attid, typeid, &data_in) < 0) ERR; /* Check the data. */ if (strcmp(data, data_in)) ERR; /* Free the memory returned by H5Aread */ free(data_in); /* Close HDF5 stuff. */ if (H5Aclose(attid) < 0) ERR; if (H5Tclose(typeid) < 0) ERR; if (H5Sclose(spaceid) < 0) ERR; if (H5Gclose(grpid) < 0) ERR; if (H5Fclose(fileid) < 0) ERR; } SUMMARIZE_ERR; printf("*** Checking simple HDF5 string types..."); { hid_t fileid, grpid, spaceid, typeid, attid; hsize_t dims[1] = {DIM1_LEN}; /* size_t type_size; htri_t is_str;*/ hid_t class; char *data[DIM1_LEN] = {"Ohhh!", "Ahhh!", "Wub-wub-wub!"}; char **data_in; int i; /* Open file. */ if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gcreate(fileid, GRP_NAME, 0)) < 0) ERR; /* Create string type. */ if ((typeid = H5Tcopy(H5T_C_S1)) < 0) ERR; if (H5Tset_size(typeid, H5T_VARIABLE) < 0) ERR; /* I thought the following should work instead of the H5Tcopy and * H5Tset_size functions above, but it doesn't. */ /*if ((typeid = H5Tvlen_create(H5T_NATIVE_CHAR)) < 0) ERR;*/ /* Write an attribute of this (string) type. */ if ((spaceid = H5Screate_simple(1, dims, NULL)) < 0) ERR; if ((attid = H5Acreate(grpid, ATT_NAME, typeid, spaceid, H5P_DEFAULT)) < 0) ERR; if (H5Awrite(attid, typeid, data) < 0) ERR; if (H5Aclose(attid) < 0) ERR; if (H5Tclose(typeid) < 0) ERR; if (H5Gclose(grpid) < 0) ERR; if (H5Fclose(fileid) < 0) ERR; /* Now reopen the file and check it out. */ if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gopen(fileid, GRP_NAME)) < 0) ERR; if ((attid = H5Aopen_name(grpid, ATT_NAME)) < 0) ERR; if ((typeid = H5Aget_type(attid)) < 0) ERR; /* Given this type id, how would we know this is a string * attribute? */ if ((class = H5Tget_class(typeid)) < 0) ERR; if (class != H5T_STRING) ERR; /* if (!(type_size = H5Tget_size(typeid))) ERR; if ((is_str = H5Tis_variable_str(typeid)) < 0) ERR;*/ /* How many strings are in the string array? */ if ((spaceid = H5Aget_space(attid)) < 0) ERR; if (H5Sget_simple_extent_dims(spaceid, dims, NULL) < 0) ERR; if (!(data_in = malloc(dims[0] * sizeof(char *)))) ERR; /* Now read the array of strings. The HDF5 library will allocate * space for each string. */ if (H5Aread(attid, typeid, data_in) < 0) ERR; /* Compare the values to make sure it worked... */ for (i = 0; i < DIM1_LEN; i++) if (strcmp(data[i], data_in[i])) ERR; /* Free the memory that HDF5 allocated. */ for (i = 0; i < DIM1_LEN; i++) free(data_in[i]); /* Free the memory that we allocated. */ free(data_in); /* Close everything up. */ if (H5Aclose(attid) < 0) ERR; if (H5Tclose(typeid) < 0) ERR; if (H5Gclose(grpid) < 0) ERR; if (H5Fclose(fileid) < 0) ERR; } SUMMARIZE_ERR; printf("*** Checking G&S compliance..."); { #define S1 "When Frederick was a little lad" #define S2 "He proved so brave and daring..." char **data; char **data_in; hsize_t dims_in[1], dims[1] = {2}; hid_t fileid, grpid, spaceid, typeid, attid; hid_t class; int i; /* Allocate space and copy strings. */ data = malloc(sizeof(char *) * 2); data[0] = malloc(strlen(S1) + 1); strcpy(data[0], S1); data[1] = malloc(strlen(S2) + 1); strcpy(data[1], S2); /* Open file. */ if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gcreate(fileid, GRP_NAME, 0)) < 0) ERR; /* Create string type. */ if ((typeid = H5Tcopy(H5T_C_S1)) < 0) ERR; if (H5Tset_size(typeid, H5T_VARIABLE) < 0) ERR; /* I thought the following should work instead of the H5Tcopy and * H5Tset_size functions above, but it doesn't. */ /*if ((typeid = H5Tvlen_create(H5T_NATIVE_CHAR)) < 0) ERR;*/ /* Write an attribute of this type. */ if ((spaceid = H5Screate_simple(1, dims, NULL)) < 0) ERR; if ((attid = H5Acreate(grpid, ATT_NAME, typeid, spaceid, H5P_DEFAULT)) < 0) ERR; if (H5Awrite(attid, typeid, data) < 0) ERR; /* Close up. */ if (H5Aclose(attid) < 0) ERR; if (H5Tclose(typeid) < 0) ERR; if (H5Gclose(grpid) < 0) ERR; if (H5Fclose(fileid) < 0) ERR; /* Now reopen the file and check it out. */ if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gopen(fileid, GRP_NAME)) < 0) ERR; if ((attid = H5Aopen_name(grpid, ATT_NAME)) < 0) ERR; if ((typeid = H5Aget_type(attid)) < 0) ERR; /* Given this type id, how would we know this is a string * attribute? */ if ((class = H5Tget_class(typeid)) < 0) ERR; if (class != H5T_STRING) ERR; /* How many strings are in the array? */ if (H5Sget_simple_extent_dims(spaceid, dims_in, NULL) != 1) ERR; if (dims_in[0] != dims[0]) ERR; /* Allocate enough pointers to read the data. The HDF5 library * will allocate the space needed for each string. */ if (!(data_in = malloc(dims_in[0] * sizeof(char *)))) ERR; /* Read the data. */ if (H5Aread(attid, typeid, data_in) < 0) ERR; /* Check the data. */ for (i = 0; i < 2; i++) if (strcmp(data[i], data_in[i])) ERR; /* Free our memory. */ for (i = 0; i < 2; i++) free(data_in[i]); free(data_in); free(data[0]); free(data[1]); free(data); /* Close HDF5 stuff. */ if (H5Aclose(attid) < 0) ERR; if (H5Tclose(typeid) < 0) ERR; if (H5Gclose(grpid) < 0) ERR; if (H5Fclose(fileid) < 0) ERR; } SUMMARIZE_ERR; printf("*** Checking empty strings..."); { char **data; char **data_in; hsize_t dims_in[1], dims[1] = {2}; hid_t fileid, grpid, spaceid, typeid, attid; hid_t class; int i; /* Allocate space and copy strings. */ data = malloc(sizeof(char *) * 2); data[0] = malloc(strlen(S1) + 1); strcpy(data[0], ""); data[1] = malloc(strlen(S2) + 1); strcpy(data[1], ""); /* Open file. */ if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gcreate(fileid, GRP_NAME, 0)) < 0) ERR; /* Create string type. */ if ((typeid = H5Tcopy(H5T_C_S1)) < 0) ERR; if (H5Tset_size(typeid, H5T_VARIABLE) < 0) ERR; /* I thought the following should work instead of the H5Tcopy and * H5Tset_size functions above, but it doesn't. */ /*if ((typeid = H5Tvlen_create(H5T_NATIVE_CHAR)) < 0) ERR;*/ /* Write an attribute of this type. */ if ((spaceid = H5Screate_simple(1, dims, NULL)) < 0) ERR; if ((attid = H5Acreate(grpid, ATT_NAME, typeid, spaceid, H5P_DEFAULT)) < 0) ERR; if (H5Awrite(attid, typeid, data) < 0) ERR; /* Close up. */ if (H5Aclose(attid) < 0) ERR; if (H5Tclose(typeid) < 0) ERR; if (H5Gclose(grpid) < 0) ERR; if (H5Fclose(fileid) < 0) ERR; /* Now reopen the file and check it out. */ if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gopen(fileid, GRP_NAME)) < 0) ERR; if ((attid = H5Aopen_name(grpid, ATT_NAME)) < 0) ERR; if ((typeid = H5Aget_type(attid)) < 0) ERR; /* Given this type id, how would we know this is a string * attribute? */ if ((class = H5Tget_class(typeid)) < 0) ERR; if (class != H5T_STRING) ERR; /* How many strings are in the array? */ if (H5Sget_simple_extent_dims(spaceid, dims_in, NULL) != 1) ERR; if (dims_in[0] != dims[0]) ERR; /* Allocate enough pointers to read the data. The HDF5 library * will allocate the space needed for each string. */ if (!(data_in = malloc(dims_in[0] * sizeof(char *)))) ERR; /* Read the data. */ if (H5Aread(attid, typeid, data_in) < 0) ERR; /* Check the data. */ for (i = 0; i < 2; i++) if (strcmp(data[i], data_in[i])) ERR; /* Free our memory. */ for (i = 0; i < 2; i++) free(data_in[i]); free(data_in); free(data[0]); free(data[1]); free(data); /* Close HDF5 stuff. */ if (H5Aclose(attid) < 0) ERR; if (H5Tclose(typeid) < 0) ERR; if (H5Gclose(grpid) < 0) ERR; if (H5Fclose(fileid) < 0) ERR; } SUMMARIZE_ERR; FINAL_RESULTS; }