/* This is part of the netCDF package. Copyright 2013 University Corporation for Atmospheric Research/Unidata See COPYRIGHT file for conditions of use. This program tests reading HDF5 files that contain scalar attributes and variables, of both string and numeric datatypes. The netCDF-4 library should allow access to all of these. */ #include #include #define FILE_NAME "tst_h_scalar.h5" #define VSTR_ATT1_NAME "vstratt1" #define VSTR_ATT2_NAME "vstratt2" #define VSTR_ATT3_NAME "vstratt3" #define VSTR_ATT4_NAME "vstratt4" #define VSTR_VAR1_NAME "vstrvar1" #define VSTR_VAR2_NAME "vstrvar2" #define FSTR_ATT_NAME "fstratt" #define FSTR_VAR_NAME "fstrvar" #define INT_ATT_NAME "intatt" #define INT_VAR_NAME "intvar" int add_attrs(hid_t objid) { hid_t scalar_spaceid = -1; hid_t vlstr_typeid = -1, fixstr_typeid = -1; char *vlstr; hid_t attid = -1; /* Create scalar dataspace */ if ((scalar_spaceid = H5Screate(H5S_SCALAR)) < 0) ERR_GOTO; /* Create string datatypes */ if ((vlstr_typeid = H5Tcreate(H5T_STRING, (size_t)H5T_VARIABLE)) < 0) ERR_GOTO; if ((fixstr_typeid = H5Tcreate(H5T_STRING, (size_t)10)) < 0) ERR_GOTO; /* Create attribute with VL string datatype on object */ if ((attid = H5Acreate2(objid, VSTR_ATT1_NAME, vlstr_typeid, scalar_spaceid, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR_GOTO; /* No write, use fill value */ if (H5Aclose(attid) < 0) ERR_GOTO; /* Create attribute with VL string datatype on object */ if ((attid = H5Acreate2(objid, VSTR_ATT2_NAME, vlstr_typeid, scalar_spaceid, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR_GOTO; vlstr = NULL; if (H5Awrite(attid, vlstr_typeid, &vlstr) < 0) ERR_GOTO; if (H5Aclose(attid) < 0) ERR_GOTO; /* Create attribute with VL string datatype on object */ if ((attid = H5Acreate2(objid, VSTR_ATT3_NAME, vlstr_typeid, scalar_spaceid, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR_GOTO; vlstr = malloc(10); *vlstr = '\0'; if (H5Awrite(attid, vlstr_typeid, &vlstr) < 0) ERR_GOTO; if (H5Aclose(attid) < 0) ERR_GOTO; /* Create attribute with VL string datatype on object */ if ((attid = H5Acreate2(objid, VSTR_ATT4_NAME, vlstr_typeid, scalar_spaceid, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR_GOTO; strcpy(vlstr, "foo"); if (H5Awrite(attid, vlstr_typeid, &vlstr) < 0) ERR_GOTO; free(vlstr); if (H5Aclose(attid) < 0) ERR_GOTO; /* Create attribute with fixed-length string datatype on object */ if ((attid = H5Acreate2(objid, FSTR_ATT_NAME, fixstr_typeid, scalar_spaceid, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR_GOTO; if (H5Aclose(attid) < 0) ERR_GOTO; /* Create attribute with native integer datatype on object */ if ((attid = H5Acreate2(objid, INT_ATT_NAME, H5T_NATIVE_INT, scalar_spaceid, H5P_DEFAULT, H5P_DEFAULT)) < 0) ERR_GOTO; if (H5Aclose(attid) < 0) ERR_GOTO; /* Clean up objects created */ if (H5Sclose(scalar_spaceid) < 0) ERR_GOTO; if (H5Tclose(vlstr_typeid) < 0) ERR_GOTO; if (H5Tclose(fixstr_typeid) < 0) ERR_GOTO; return(0); error: H5E_BEGIN_TRY { H5Aclose(attid); H5Sclose(scalar_spaceid); H5Tclose(vlstr_typeid); H5Tclose(fixstr_typeid); } H5E_END_TRY; return(-1); } int check_attrs(int ncid, int obj) { int attid; int natts = 0; size_t len; nc_type type; char *vlstr; char fixstr[10]; int x; /* Check the object's attributes are OK */ if (nc_inq_varnatts(ncid, obj, &natts )) ERR_GOTO; if (natts != 6) ERR_GOTO; if (nc_inq_attid(ncid, obj, VSTR_ATT1_NAME, &attid)) ERR_GOTO; if (attid != 0) ERR_GOTO; if (nc_inq_atttype(ncid, obj, VSTR_ATT1_NAME, &type)) ERR_GOTO; if (type != NC_STRING) ERR_GOTO; if (nc_inq_attlen(ncid, obj, VSTR_ATT1_NAME, &len)) ERR_GOTO; if (len != 1) ERR_GOTO; vlstr = NULL; if (nc_get_att(ncid, obj, VSTR_ATT1_NAME, &vlstr)) ERR_GOTO; if (NULL != vlstr) ERR_GOTO; if (nc_inq_attid(ncid, obj, VSTR_ATT2_NAME, &attid)) ERR_GOTO; if (attid != 1) ERR_GOTO; if (nc_inq_atttype(ncid, obj, VSTR_ATT2_NAME, &type)) ERR_GOTO; if (type != NC_STRING) ERR_GOTO; if (nc_inq_attlen(ncid, obj, VSTR_ATT2_NAME, &len)) ERR_GOTO; if (len != 1) ERR_GOTO; vlstr = NULL; if (nc_get_att(ncid, obj, VSTR_ATT2_NAME, &vlstr)) ERR_GOTO; if (NULL != vlstr) ERR_GOTO; if (nc_inq_attid(ncid, obj, VSTR_ATT3_NAME, &attid)) ERR_GOTO; if (attid != 2) ERR_GOTO; if (nc_inq_atttype(ncid, obj, VSTR_ATT3_NAME, &type)) ERR_GOTO; if (type != NC_STRING) ERR_GOTO; if (nc_inq_attlen(ncid, obj, VSTR_ATT3_NAME, &len)) ERR_GOTO; if (len != 1) ERR_GOTO; vlstr = NULL; if (nc_get_att(ncid, obj, VSTR_ATT3_NAME, &vlstr)) ERR_GOTO; if (strcmp(vlstr, "")) ERR_GOTO; free(vlstr); if (nc_inq_attid(ncid, obj, VSTR_ATT4_NAME, &attid)) ERR_GOTO; if (attid != 3) ERR_GOTO; if (nc_inq_atttype(ncid, obj, VSTR_ATT4_NAME, &type)) ERR_GOTO; if (type != NC_STRING) ERR_GOTO; if (nc_inq_attlen(ncid, obj, VSTR_ATT4_NAME, &len)) ERR_GOTO; if (len != 1) ERR_GOTO; vlstr = NULL; if (nc_get_att(ncid, obj, VSTR_ATT4_NAME, &vlstr)) ERR_GOTO; if (strcmp(vlstr, "foo")) ERR_GOTO; free(vlstr); if (nc_inq_attid(ncid, obj, FSTR_ATT_NAME, &attid)) ERR_GOTO; if (attid != 4) ERR_GOTO; if (nc_inq_atttype(ncid, obj, FSTR_ATT_NAME, &type)) ERR_GOTO; if (type != NC_CHAR) ERR_GOTO; if (nc_inq_attlen(ncid, obj, FSTR_ATT_NAME, &len)) ERR_GOTO; if (len != 10) ERR_GOTO; memset(fixstr, 1, sizeof(fixstr)); if (nc_get_att(ncid, obj, FSTR_ATT_NAME, fixstr)) ERR_GOTO; if ('\0' != fixstr[0]) ERR_GOTO; if (nc_inq_attid(ncid, obj, INT_ATT_NAME, &attid)) ERR_GOTO; if (attid != 5) ERR_GOTO; if (nc_inq_atttype(ncid, obj, INT_ATT_NAME, &type)) ERR_GOTO; if (type != NC_INT) ERR_GOTO; if (nc_inq_attlen(ncid, obj, INT_ATT_NAME, &len)) ERR_GOTO; if (len != 1) ERR_GOTO; x = -1; if (nc_get_att(ncid, obj, INT_ATT_NAME, &x)) ERR_GOTO; if (0 != x) ERR_GOTO; return(0); error: return(-1); } int main() { printf("\n*** Creating file with datasets & attributes that have scalar dataspaces..."); { hid_t fileid; hid_t fcplid; hid_t dsetid; hid_t dcplid; hid_t scalar_spaceid; hid_t vlstr_typeid, fixstr_typeid; hid_t attid; /* Create scalar dataspace */ if ((scalar_spaceid = H5Screate(H5S_SCALAR)) < 0) ERR; /* Set creation ordering for file, so we can revise its contents later */ if ((fcplid = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR; if (H5Pset_link_creation_order(fcplid, H5P_CRT_ORDER_TRACKED) < 0) ERR; if (H5Pset_attr_creation_order(fcplid, H5P_CRT_ORDER_TRACKED) < 0) ERR; /* Create new file, using default properties */ if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcplid, H5P_DEFAULT)) < 0) ERR; /* Close file creation property list */ if (H5Pclose(fcplid) < 0) ERR; /* Create variable-length string datatype */ if ((vlstr_typeid = H5Tcreate(H5T_STRING, (size_t)H5T_VARIABLE)) < 0) ERR; /* Create fixed-length string datatype */ if ((fixstr_typeid = H5Tcreate(H5T_STRING, (size_t)10)) < 0) ERR; /* Set creation ordering for dataset, so we can revise its contents later */ if ((dcplid = H5Pcreate(H5P_DATASET_CREATE)) < 0) ERR; if (H5Pset_attr_creation_order(dcplid, H5P_CRT_ORDER_TRACKED) < 0) ERR; /* Create scalar dataset with VL string datatype */ if ((dsetid = H5Dcreate2(fileid, VSTR_VAR1_NAME, vlstr_typeid, scalar_spaceid, H5P_DEFAULT, dcplid, H5P_DEFAULT)) < 0) ERR; /* Add attributes to dataset */ if (add_attrs(dsetid) < 0) ERR; /* Close VL string dataset */ if (H5Dclose(dsetid) < 0) ERR; /* Create scalar dataset with fixed-length string datatype */ if ((dsetid = H5Dcreate2(fileid, FSTR_VAR_NAME, fixstr_typeid, scalar_spaceid, H5P_DEFAULT, dcplid, H5P_DEFAULT)) < 0) ERR; /* Add attributes to dataset */ if (add_attrs(dsetid) < 0) ERR; /* Close fixed-length string dataset */ if (H5Dclose(dsetid) < 0) ERR; /* Create scalar dataset with native integer datatype */ if ((dsetid = H5Dcreate2(fileid, INT_VAR_NAME, H5T_NATIVE_INT, scalar_spaceid, H5P_DEFAULT, dcplid, H5P_DEFAULT)) < 0) ERR; /* Add attributes to dataset */ if (add_attrs(dsetid) < 0) ERR; /* Close native integer dataset */ if (H5Dclose(dsetid) < 0) ERR; /* Add attributes to root group */ if (add_attrs(fileid) < 0) ERR; /* Close dataset creation property list */ if (H5Pclose(dcplid) < 0) ERR; /* Close string datatypes */ if (H5Tclose(vlstr_typeid) < 0) ERR; if (H5Tclose(fixstr_typeid) < 0) ERR; /* Close rest */ if (H5Sclose(scalar_spaceid) < 0) ERR; if (H5Fclose(fileid) < 0) ERR; } SUMMARIZE_ERR; printf("*** Checking accessing file through netCDF-4 API..."); { int ncid, varid; size_t len; nc_type type; int ndims; char *vlstr; int x; if (nc_open(FILE_NAME, NC_NOWRITE, &ncid)) ERR; /* Check the global attributes are OK */ if (check_attrs(ncid, NC_GLOBAL) < 0) ERR; /* Verify that the VL string dataset is present and OK */ if (nc_inq_varid(ncid, VSTR_VAR1_NAME, &varid)) ERR; if (varid != 0) ERR; if (nc_inq_vartype(ncid, varid, &type)) ERR; if (type != NC_STRING) ERR; if (nc_inq_varndims(ncid, varid, &ndims)) ERR; if (ndims != 0) ERR; vlstr = NULL; if (nc_get_var(ncid, varid, &vlstr)) ERR; if (NULL != vlstr) ERR; /* Check the variable's attributes are OK */ if (check_attrs(ncid, varid) < 0) ERR; /* Verify that the fixed-length string dataset is present and OK */ if (nc_inq_varid(ncid, FSTR_VAR_NAME, &varid)) ERR; if (varid != 1) ERR; if (nc_inq_vartype(ncid, varid, &type)) ERR; if (type != NC_STRING) ERR; if (nc_inq_varndims(ncid, varid, &ndims)) ERR; if (ndims != 0) ERR; vlstr = NULL; if (nc_get_var(ncid, varid, &vlstr)) ERR; if ('\0' != *vlstr) ERR; free(vlstr); /* Check the variable's attributes are OK */ if (check_attrs(ncid, varid) < 0) ERR; /* Verify that the integer dataset is present and OK */ if (nc_inq_varid(ncid, INT_VAR_NAME, &varid)) ERR; if (varid != 2) ERR; if (nc_inq_vartype(ncid, varid, &type)) ERR; if (type != NC_INT) ERR; if (nc_inq_varndims(ncid, varid, &ndims)) ERR; if (ndims != 0) ERR; x = -1; if (nc_get_var(ncid, varid, &x)) ERR; if (0 != x) ERR; /* Check the variable's attributes are OK */ if (check_attrs(ncid, varid) < 0) ERR; if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; printf("*** Checking revising file through netCDF-4 API..."); { int ncid, varid; char *vlstr; if (nc_open(FILE_NAME, NC_WRITE, &ncid)) ERR; /* Write to the VL string variable */ if (nc_inq_varid(ncid, VSTR_VAR1_NAME, &varid)) ERR; vlstr = NULL; if (nc_put_var(ncid, varid, &vlstr)) ERR; vlstr = malloc(10); *vlstr = '\0'; if (nc_put_var(ncid, varid, &vlstr)) ERR; strcpy(vlstr, "foo"); if (nc_put_var(ncid, varid, &vlstr)) ERR; free(vlstr); /* Write to a VL string attribute */ vlstr = NULL; if (nc_put_att(ncid, varid, VSTR_ATT1_NAME, NC_STRING, 1, &vlstr)) ERR; vlstr = malloc(10); *vlstr = '\0'; if (nc_put_att(ncid, varid, VSTR_ATT1_NAME, NC_STRING, 1, &vlstr)) ERR; strcpy(vlstr, "foo"); if (nc_put_att(ncid, varid, VSTR_ATT1_NAME, NC_STRING, 1, &vlstr)) ERR; free(vlstr); /* Define a new VL string variable */ if (nc_def_var(ncid, VSTR_VAR2_NAME , NC_STRING, 0, NULL, &varid)) ERR; /* Write to the variable's fill-value */ vlstr = NULL; if (nc_put_att(ncid, varid, _FillValue, NC_STRING, 1, &vlstr)) ERR; vlstr = malloc(10); *vlstr = '\0'; if (nc_put_att(ncid, varid, _FillValue, NC_STRING, 1, &vlstr)) ERR; strcpy(vlstr, "foo"); if (nc_put_att(ncid, varid, _FillValue, NC_STRING, 1, &vlstr)) ERR; free(vlstr); if (nc_close(ncid)) ERR; } SUMMARIZE_ERR; FINAL_RESULTS; }