/* This is part of the netCDF package. Copyright 2018 University Corporation for Atmospheric Research/Unidata See COPYRIGHT file for conditions of use. Test HDF5 file code. These are not intended to be exhaustive tests, but they use HDF5 the same way that netCDF-4 does, so if these tests don't work, than netCDF-4 won't work either. This file does some tests of complex user-defined types. It is primarily meant to be run with valgrind as a memory test. $Id$ */ #include "h5_err_macros.h" #include #define MY_CHUNK_CACHE_SIZE 32000000 #define STR_LEN 255 /* The file we create. */ #define FILE_NAME "tst_h_atts4.h5" #define NUM_OBJ_2 2 #define S1_TYPE_NAME "CRONUS_COMPOUND" #define X_NAME "x" #define Y_NAME "y" #define S1_NAME "s1" #define VLEN_TYPE_NAME "Percy_Jackson_VLEN" #define ATT_NAME "Poseidon" #define S3_TYPE_NAME "Olympus" #define VL_NAME "Trident" #define ATT_LEN 1 int main() { printf("\n*** Checking HDF5 attribute functions for memory leaks.\n"); printf("*** Checking vlen of compound file..."); { #define NUM_OBJ_2 2 #define ATT_NAME "Poseidon" hid_t fapl_id, fcpl_id; size_t chunk_cache_size = MY_CHUNK_CACHE_SIZE; size_t chunk_cache_nelems = CHUNK_CACHE_NELEMS; float chunk_cache_preemption = CHUNK_CACHE_PREEMPTION; hid_t fileid, grpid, attid, spaceid; hid_t s1_typeid, vlen_typeid; hid_t file_typeid1[NUM_OBJ_2], native_typeid1[NUM_OBJ_2]; hid_t file_typeid2, native_typeid2; hsize_t num_obj; #if H5_VERSION_GE(1,12,0) H5O_info2_t obj_info; #else H5O_info_t obj_info; #endif char obj_name[STR_LEN + 1]; hsize_t dims[1] = {ATT_LEN}; /* netcdf attributes always 1-D. */ struct s1 { float x; double y; }; /* vc stands for "Vlen of Compound." */ hvl_t *vc_out; int i, k; /* Create some output data: an array of vlen (length ATT_LEN) of * struct s1. */ if (!(vc_out = calloc(sizeof(hvl_t), ATT_LEN))) ERR; for (i = 0; i < ATT_LEN; i++) { vc_out[i].len = i + 1; if (!(vc_out[i].p = calloc(sizeof(struct s1), vc_out[i].len))) ERR; for (k = 0; k < vc_out[i].len; k++) { ((struct s1 *)vc_out[i].p)[k].x = 42.42; ((struct s1 *)vc_out[i].p)[k].y = 2.0; } } /* Create the HDF5 file, with cache control, creation order, and * all the timmings. */ if ((fapl_id = H5Pcreate(H5P_FILE_ACCESS)) < 0) ERR; if (H5Pset_fclose_degree(fapl_id, H5F_CLOSE_STRONG)) ERR; if (H5Pset_cache(fapl_id, 0, chunk_cache_nelems, chunk_cache_size, chunk_cache_preemption) < 0) ERR; if ((fcpl_id = H5Pcreate(H5P_FILE_CREATE)) < 0) ERR; if (H5Pset_link_creation_order(fcpl_id, (H5P_CRT_ORDER_TRACKED | H5P_CRT_ORDER_INDEXED)) < 0) ERR; if (H5Pset_attr_creation_order(fcpl_id, (H5P_CRT_ORDER_TRACKED | H5P_CRT_ORDER_INDEXED)) < 0) ERR; if ((fileid = H5Fcreate(FILE_NAME, H5F_ACC_TRUNC, fcpl_id, fapl_id)) < 0) ERR; if (H5Pclose(fapl_id) < 0) ERR; if (H5Pclose(fcpl_id) < 0) ERR; /* Open the root group. */ if ((grpid = H5Gopen2(fileid, "/", H5P_DEFAULT)) < 0) ERR; /* Create the compound type for struct s1. */ if ((s1_typeid = H5Tcreate(H5T_COMPOUND, sizeof(struct s1))) < 0) ERR; if (H5Tinsert(s1_typeid, X_NAME, offsetof(struct s1, x), H5T_NATIVE_FLOAT) < 0) ERR; if (H5Tinsert(s1_typeid, Y_NAME, offsetof(struct s1, y), H5T_NATIVE_DOUBLE) < 0) ERR; if (H5Tcommit1(grpid, S1_TYPE_NAME, s1_typeid) < 0) ERR; /* Create a vlen type. Its a vlen of struct s1. */ if ((vlen_typeid = H5Tvlen_create(s1_typeid)) < 0) ERR; if (H5Tcommit1(grpid, VLEN_TYPE_NAME, vlen_typeid) < 0) ERR; /* Create an attribute of this new type. */ if ((spaceid = H5Screate_simple(1, dims, NULL)) < 0) ERR; if ((attid = H5Acreate1(grpid, ATT_NAME, vlen_typeid, spaceid, H5P_DEFAULT)) < 0) ERR; if (H5Awrite(attid, vlen_typeid, vc_out) < 0) ERR; /* Close the types. */ if (H5Tclose(s1_typeid) < 0 || H5Tclose(vlen_typeid) < 0) ERR; /* Close the att. */ if (H5Aclose(attid) < 0) ERR; /* Close the space. */ if (H5Sclose(spaceid) < 0) ERR; /* Close the group and file. */ if (H5Gclose(grpid) < 0 || H5Fclose(fileid) < 0) ERR; /* Reopen the file. */ if ((fileid = H5Fopen(FILE_NAME, H5F_ACC_RDWR, H5P_DEFAULT)) < 0) ERR; if ((grpid = H5Gopen1(fileid, "/")) < 0) ERR; /* How many objects in this group? (There should be 2, the * types. Atts don't count as objects to HDF5.) */ if (H5Gget_num_objs(grpid, &num_obj) < 0) ERR; if (num_obj != NUM_OBJ_2) ERR; /* For each object in the group... */ for (i = 0; i < num_obj; i++) { /* Get the name, and make sure this is a type. */ #if H5_VERSION_GE(1,12,0) if (H5Oget_info_by_idx3(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, i, &obj_info, H5O_INFO_BASIC, H5P_DEFAULT) < 0) ERR; #else if (H5Oget_info_by_idx(grpid, ".", H5_INDEX_CRT_ORDER, H5_ITER_INC, i, &obj_info, H5P_DEFAULT) < 0) ERR; #endif if (H5Lget_name_by_idx(grpid, ".", H5_INDEX_NAME, H5_ITER_INC, i, obj_name, STR_LEN + 1, H5P_DEFAULT) < 0) ERR; if (obj_info.type != H5O_TYPE_NAMED_DATATYPE) ERR; /* Get the typeid and native typeid. */ if ((file_typeid1[i] = H5Topen2(grpid, obj_name, H5P_DEFAULT)) < 0) ERR; if ((native_typeid1[i] = H5Tget_native_type(file_typeid1[i], H5T_DIR_DEFAULT)) < 0) ERR; } /* There is one att: open it by index. */ if ((attid = H5Aopen_idx(grpid, 0)) < 0) ERR; /* Get file and native typeids of the att. */ if ((file_typeid2 = H5Aget_type(attid)) < 0) ERR; if ((native_typeid2 = H5Tget_native_type(file_typeid2, H5T_DIR_DEFAULT)) < 0) ERR; /* Close the attribute. */ if (H5Aclose(attid) < 0) ERR; /* Close the typeids. */ for (i = 0; i < NUM_OBJ_2; i++) { if (H5Tclose(file_typeid1[i]) < 0) ERR; if (H5Tclose(native_typeid1[i]) < 0) ERR; } if (H5Tclose(file_typeid2) < 0) ERR; if (H5Tclose(native_typeid2) < 0) ERR; /* Close the group and file. */ if (H5Gclose(grpid) < 0 || H5Fclose(fileid) < 0) ERR; /* Deallocate our vlens. */ for (i = 0; i < ATT_LEN; i++) free(vc_out[i].p); free(vc_out); } SUMMARIZE_ERR; FINAL_RESULTS; }