/* This file is part of netcdf-4, a netCDF-like interface for HDF5, or a HDF5 backend for netCDF, depending on your point of view. This file handles the nc4 groups. Copyright 2005, University Corporation for Atmospheric Research. See netcdf-4/docs/COPYRIGHT file for copying and redistribution conditions. $Id: nc4grp.c,v 1.44 2010/05/25 17:54:23 dmh Exp $ */ #include "nc4internal.h" #include "nc4dispatch.h" /* Create a group. It's ncid is returned in the new_ncid pointer. */ int NC4_def_grp(int parent_ncid, const char *name, int *new_ncid) { NC_GRP_INFO_T *grp; NC_HDF5_FILE_INFO_T *h5; char norm_name[NC_MAX_NAME + 1]; int retval; LOG((2, "%s: parent_ncid 0x%x name %s", __func__, parent_ncid, name)); /* Find info for this file and group, and set pointer to each. */ if ((retval = nc4_find_grp_h5(parent_ncid, &grp, &h5))) return retval; if (!h5) return NC_ENOTNC4; /* Check and normalize the name. */ if ((retval = nc4_check_name(name, norm_name))) return retval; /* Check that this name is not in use as a var, grp, or type. */ if ((retval = nc4_check_dup_name(grp, norm_name))) return retval; /* No groups in netcdf-3! */ if (h5->cmode & NC_CLASSIC_MODEL) return NC_ESTRICTNC3; /* If it's not in define mode, switch to define mode. */ if (!(h5->flags & NC_INDEF)) if ((retval = NC4_redef(parent_ncid))) return retval; /* Update internal lists to reflect new group. The actual HDF5 * group creation will be done when metadata is written by a * sync. */ if ((retval = nc4_grp_list_add(&(grp->children), h5->next_nc_grpid, grp, grp->nc4_info->controller, norm_name, NULL))) return retval; if (new_ncid) *new_ncid = grp->nc4_info->controller->ext_ncid | h5->next_nc_grpid; h5->next_nc_grpid++; return NC_NOERR; } /* Rename a group. */ int NC4_rename_grp(int grpid, const char *name) { NC_GRP_INFO_T *grp; NC_HDF5_FILE_INFO_T *h5; char norm_name[NC_MAX_NAME + 1]; int retval; LOG((2, "nc_rename_grp: grpid 0x%x name %s", grpid, name)); /* Find info for this file and group, and set pointer to each. */ if ((retval = nc4_find_grp_h5(grpid, &grp, &h5))) return retval; if (!h5) return NC_ENOTNC4; if (h5->no_write) return NC_EPERM; /* attempt to write to a read-only file */ /* Do not allow renaming the root group */ if(grp->parent == NULL) return NC_EBADGRPID; /* Check and normalize the name. */ if ((retval = nc4_check_name(name, norm_name))) return retval; /* Check that this name is not in use as a var, grp, or type. */ if ((retval = nc4_check_dup_name(grp, norm_name))) return retval; /* If it's not in define mode, switch to define mode. */ if (!(h5->flags & NC_INDEF)) if ((retval = NC4_redef(grpid))) return retval; /* Rename the group, if it exists in the file */ if (grp->hdf_grpid) { /* Close the group */ if (H5Gclose(grp->hdf_grpid) < 0) return NC_EHDFERR; grp->hdf_grpid = 0; /* Attempt to rename & re-open the group, if the parent group is open */ if (grp->parent->hdf_grpid) { /* Rename the group */ if (H5Gmove(grp->parent->hdf_grpid, grp->name, name) < 0) return NC_EHDFERR; /* Reopen the group, with the new name */ if ((grp->hdf_grpid = H5Gopen2(grp->parent->hdf_grpid, name, H5P_DEFAULT)) < 0) return NC_EHDFERR; } } /* Give the group its new name in metadata. UTF8 normalization * has been done. */ free(grp->name); if (!(grp->name = malloc((strlen(norm_name) + 1) * sizeof(char)))) return NC_ENOMEM; strcpy(grp->name, norm_name); return NC_NOERR; } /* Given an ncid and group name (NULL gets root group), return * the ncid of that group. */ int NC4_inq_ncid(int ncid, const char *name, int *grp_ncid) { NC_GRP_INFO_T *grp, *g; NC_HDF5_FILE_INFO_T *h5; char norm_name[NC_MAX_NAME + 1]; int retval; LOG((2, "nc_inq_ncid: ncid 0x%x name %s", ncid, name)); /* Find info for this file and group, and set pointer to each. */ if ((retval = nc4_find_grp_h5(ncid, &grp, &h5))) return retval; /* Groups only work with netCDF-4/HDF5 files... */ if (!h5) return NC_ENOTNC4; /* Normalize name. */ if ((retval = nc4_normalize_name(name, norm_name))) return retval; /* Look through groups for one of this name. */ for (g = grp->children; g; g = g->l.next) if (!strcmp(norm_name, g->name)) /* found it! */ { if (grp_ncid) *grp_ncid = grp->nc4_info->controller->ext_ncid | g->nc_grpid; return NC_NOERR; } /* If we got here, we didn't find the named group. */ return NC_ENOGRP; } /* Given a location id, return the number of groups it contains, and * an array of their locids. */ int NC4_inq_grps(int ncid, int *numgrps, int *ncids) { NC_GRP_INFO_T *grp, *g; NC_HDF5_FILE_INFO_T *h5; int num = 0; int retval; LOG((2, "nc_inq_grps: ncid 0x%x", ncid)); /* Find info for this file and group, and set pointer to each. */ if ((retval = nc4_find_grp_h5(ncid, &grp, &h5))) return retval; /* For netCDF-3 files, just report zero groups. */ if (!h5) { if (numgrps) *numgrps = 0; return NC_NOERR; } /* Count the number of groups in this group. */ for (g = grp->children; g; g = g->l.next) { if (ncids) { /* Combine the nc_grpid in a bitwise or with the ext_ncid, * which allows the returned ncid to carry both file and * group information. */ *ncids = g->nc_grpid | g->nc4_info->controller->ext_ncid; ncids++; } num++; } if (numgrps) *numgrps = num; return NC_NOERR; } /* Given locid, find name of group. (Root group is named "/".) */ int NC4_inq_grpname(int ncid, char *name) { NC_GRP_INFO_T *grp; NC_HDF5_FILE_INFO_T *h5; int retval; LOG((2, "nc_inq_grpname: ncid 0x%x", ncid)); /* Find info for this file and group, and set pointer to each. */ if ((retval = nc4_find_grp_h5(ncid, &grp, &h5))) return retval; if (name) { if (!h5) strcpy(name, "/"); else strcpy(name, grp->name); } return NC_NOERR; } /* Find the full path name to the group represented by ncid. Either * pointer argument may be NULL; pass a NULL for the third parameter * to get the length of the full path name. The length will not * include room for a null pointer. */ int NC4_inq_grpname_full(int ncid, size_t *lenp, char *full_name) { char *name, grp_name[NC_MAX_NAME + 1]; int g, id = ncid, parent_id, *gid; int i, ret = NC_NOERR; /* How many generations? */ for (g = 0; !NC4_inq_grp_parent(id, &parent_id); g++, id = parent_id) ; /* Allocate storage. */ if (!(name = malloc((g + 1) * (NC_MAX_NAME + 1) + 1))) return NC_ENOMEM; if (!(gid = malloc((g + 1) * sizeof(int)))) { free(name); return NC_ENOMEM; } assert(name && gid); /* Always start with a "/" for the root group. */ strcpy(name, "/"); /* Get the ncids for all generations. */ gid[0] = ncid; for (i = 1; i < g && !ret; i++) ret = NC4_inq_grp_parent(gid[i - 1], &gid[i]); /* Assemble the full name. */ for (i = g - 1; !ret && i >= 0 && !ret; i--) { if ((ret = NC4_inq_grpname(gid[i], grp_name))) break; strcat(name, grp_name); if (i) strcat(name, "/"); } /* Give the user the length of the name, if he wants it. */ if (!ret && lenp) *lenp = strlen(name); /* Give the user the name, if he wants it. */ if (!ret && full_name) strcpy(full_name, name); free(gid); free(name); return ret; } /* Find the parent ncid of a group. For the root group, return * NC_ENOGRP error. *Now* I know what kind of tinfoil hat wearing nut * job would call this function with a NULL pointer for parent_ncid - * Russ Rew!! */ int NC4_inq_grp_parent(int ncid, int *parent_ncid) { NC_GRP_INFO_T *grp; NC_HDF5_FILE_INFO_T *h5; int retval; LOG((2, "nc_inq_grp_parent: ncid 0x%x", ncid)); /* Find info for this file and group. */ if ((retval = nc4_find_grp_h5(ncid, &grp, &h5))) return retval; /* Groups only work with netCDF-4/HDF5 files... */ if (!h5) return NC_ENOGRP; /* Set the parent ncid, if there is one. */ if (grp->parent) { if (parent_ncid) *parent_ncid = grp->nc4_info->controller->ext_ncid | grp->parent->nc_grpid; } else return NC_ENOGRP; return NC_NOERR; } /* Given a full name and ncid, find group ncid. */ int NC4_inq_grp_full_ncid(int ncid, const char *full_name, int *grp_ncid) { NC_GRP_INFO_T *grp; NC_HDF5_FILE_INFO_T *h5; int id1 = ncid, id2; char *cp, *full_name_cpy; int ret; if (!full_name) return NC_EINVAL; /* Find info for this file and group, and set pointer to each. */ if ((ret = nc4_find_grp_h5(ncid, &grp, &h5))) return ret; /* Copy full_name because strtok messes with the value it works * with, and we don't want to mess up full_name. */ if (!(full_name_cpy = malloc(strlen(full_name) + 1))) return NC_ENOMEM; strcpy(full_name_cpy, full_name); /* Get the first part of the name. */ if (!(cp = strtok(full_name_cpy, "/"))) { /* If "/" is passed, and this is the root group, return the root * group id. */ if (!grp->parent) id2 = ncid; else { free(full_name_cpy); return NC_ENOGRP; } } else { /* Keep parsing the string. */ for (; cp; id1 = id2) { if ((ret = NC4_inq_ncid(id1, cp, &id2))) { free(full_name_cpy); return ret; } cp = strtok(NULL, "/"); } } /* Give the user the requested value. */ if (grp_ncid) *grp_ncid = id2; free(full_name_cpy); return NC_NOERR; } /* Get a list of ids for all the variables in a group. */ int NC4_inq_varids(int ncid, int *nvars, int *varids) { NC_GRP_INFO_T *grp; NC_HDF5_FILE_INFO_T *h5; NC_VAR_INFO_T *var; int v, num_vars = 0; int retval; LOG((2, "nc_inq_varids: ncid 0x%x", ncid)); /* Find info for this file and group, and set pointer to each. */ if ((retval = nc4_find_grp_h5(ncid, &grp, &h5))) return retval; if (!h5) { /* If this is a netcdf-3 file, there is only one group, the root * group, and its vars have ids 0 thru nvars - 1. */ if ((retval = NC4_inq(ncid, NULL, &num_vars, NULL, NULL))) return retval; if (varids) for (v = 0; v < num_vars; v++) varids[v] = v; } else { /* This is a netCDF-4 group. Round up them doggies and count * 'em. The list is in correct (i.e. creation) order. */ if (grp->var) { for (var = grp->var; var; var = var->l.next) { if (varids) varids[num_vars] = var->varid; num_vars++; } } } /* If the user wants to know how many vars in the group, tell * him. */ if (nvars) *nvars = num_vars; return NC_NOERR; } /* This is the comparison function used for sorting dim ids. Integer comparison: returns negative if b > a and positive if a > b. */ int int_cmp(const void *a, const void *b) { const int *ia = (const int *)a; const int *ib = (const int *)b; return *ia - *ib; } /* Find all dimids for a location. This finds all dimensions in a * group, with or without any of its parents, depending on last * parameter. */ int NC4_inq_dimids(int ncid, int *ndims, int *dimids, int include_parents) { NC_GRP_INFO_T *grp, *g; NC_HDF5_FILE_INFO_T *h5; NC_DIM_INFO_T *dim; int d, num = 0; int retval; LOG((2, "nc_inq_dimids: ncid 0x%x include_parents: %d", ncid, include_parents)); /* Find info for this file and group, and set pointer to each. */ if ((retval = nc4_find_grp_h5(ncid, &grp, &h5))) return retval; if (!h5) { /* If this is a netcdf-3 file, then the dimids are going to be 0 * thru ndims-1, so just provide them. */ if ((retval = NC4_inq(ncid, &num, NULL, NULL, NULL))) return retval; if (dimids) for (d = 0; d < num; d++) dimids[d] = d; } else { /* First count them. */ for (dim = grp->dim; dim; dim = dim->l.next) num++; if (include_parents) for (g = grp->parent; g; g = g->parent) for (dim = g->dim; dim; dim = dim->l.next) num++; /* If the user wants the dimension ids, get them. */ if (dimids) { int n = 0; /* Get dimension ids from this group. */ for (dim = grp->dim; dim; dim = dim->l.next) dimids[n++] = dim->dimid; /* Get dimension ids from parent groups. */ if (include_parents) for (g = grp->parent; g; g = g->parent) for (dim = g->dim; dim; dim = dim->l.next) dimids[n++] = dim->dimid; qsort(dimids, num, sizeof(int), int_cmp); } } /* If the user wants the number of dims, give it. */ if (ndims) *ndims = num; return NC_NOERR; }