Commit Graph

268 Commits

Author SHA1 Message Date
dmh
31d15ec532 re: NCF-317
If the netCDF-C library is built with the
HDF5 library but without the HDF4 library and one attempts
to open an HDF4 file, an abort occurs rather than returning
a proper error code (NC_ENOTNC).
Fix is to modify dfile.c#NC_check_file_type to properly
#ifdef relevant tests.
2014-10-07 12:37:41 -06:00
Ward Fisher
85e8e7e945 Addressed man page syntax warnings reported in github issue 52, https://github.com/Unidata/netcdf-c/issues/52 2014-10-03 10:46:02 -06:00
Ward Fisher
21eaec9583 corrected an undefined value error identified by clang. 2014-10-02 12:43:27 -06:00
dmh
2e20b700af Forgot to update cmake wrt to directory name changes 2014-09-19 12:43:39 -06:00
dmh
7e582ad3f2 re: Jira NCF-309
The code for handling character constants
in datalists in ncgen has some problems.
1. It failed on large constants
2. It did not handle e.g. var = 'a', 'b', ...
   in the same way that ncgen3 did.
3. The code for generate.c and genchar.c needed
   some refactoring to make it a little simpler
   (but not simple).
2014-09-18 18:26:06 -06:00
Russ Rew
c5237736e4 For nccopy, added version info in usage printout. 2014-08-26 14:05:47 -06:00
Ward Fisher
b43813d821 When using the '-ansi' flag with gcc, netcdf would fail to build because of the use of '//' for one-line comments. I've addressed this by replacing instances of // with enclosing comment blocks. 2014-08-26 11:19:32 -06:00
Ward Fisher
3af9240acb More cleaning up for release. 2014-08-25 16:39:45 -06:00
Ward Fisher
df8caaf1d5 Corrected an error with a missing reference file. 2014-08-25 14:32:05 -06:00
Ward Fisher
6c071be031 Corrected issues where functions were not available in Windows. Specifically strndup. Also accomodated an included needed for getcwd. 2014-08-07 17:03:27 -06:00
Russ Rew
720e4ea82c Fixed bug NCF-310 (ncdump char vars with multiple unlimited dims).
Added associated tests and entry in RELEASE_NOTES.
2014-08-07 14:35:29 -06:00
dmh
cd2574ba7c Change assertion failure to a error 2014-07-23 11:25:49 -06:00
Ward Fisher
7f812b367e Manual merge of pull request https://github.com/Unidata/netcdf-c/pull/64 contributed by nschloe. Assorted CMake improvements. 2014-06-11 15:51:31 -06:00
Ward Fisher
d2e643429b Changed invocation of cmake from absolute to relative. 2014-06-06 13:57:02 -06:00
dmh
83ec39f5db [NCF-272]
re: e support ZCL-340681 and CPW-270700

HDF4 supports compression (and chunking)
but the chunking was not being recorded
for HDF4 files. So, I modified the necessary
files to support HDF4 chunking.
2014-06-02 13:04:28 -06:00
Ward Fisher
cd30a9e570 Corrected several static analysis errors related to uninitialized variables. 2014-04-22 16:11:37 -06:00
Ward Fisher
733f6257b0 Updating cmake shared_linker_flags as suggested by Nico Schlomer: https://github.com/Unidata/netcdf-c/issues/46
Fixed indentation.

Updated .gitignore.

Added a macro to make it easy to check to see if the linker supports a particular flag.  Debug builds now pass the -w1,--no-undefined if it is detected the linker supports it.
2014-04-02 15:54:05 -06:00
Ward Fisher
bb84fda8cf Removed a couple of clang-reported potential dereferences of null/undefined pointers. 2014-03-31 09:56:39 -06:00
Russ Rew
b22181768d Fix a few coverity warnings. 2014-03-28 22:03:10 -06:00
Russ Rew
9d86610739 Fix Jira ticket NCF-295, nccopy -d0 shuffle and chunking issues 2014-03-23 17:25:45 -06:00
Russ Rew
d774e23bc1 Fix -d0 option to not do unwanted chunking or associated shuffle.
Add -c '/' option to specify changing layout for all variables from chunked to contiguous.
Fix logic for chunking and compression depending on input and output formats.
2014-03-21 12:34:19 -06:00
Ward Fisher
8d5d592a18 Added tst_bom.sh to EXTRA_DIST, fixing a failure in 'make dist'. 2014-03-13 10:33:03 -06:00
dmh
a1f8d0a761 turn on tst_auth 2014-03-10 16:40:52 -06:00
dmh
1b941d342d 1. Attempted to reduce the number of conversion errors
when -Wconversion is set. Fixed libdispatch, but
   rest of netcdf remains to be done.
2014-03-09 15:51:45 -06:00
dmh
2bc36f2bc1 conflict resolution 2014-03-08 20:43:18 -07:00
dmh
a189b98b0b 1. Any test that references nctestserver/NC_findtestserver
should be under ENABLE_DAP_REMOTE_TESTS.
   Fixed to make sure that this is so.
   Also attempted to fix ncdap_test/CMakeLists.txt,
   but probably got it wrong.
   HT to Nico Schlomer.
2. Attempted to reduce the number of conversion errors
   when -Wconversion is set. Fixed oc2, but
   rest of netcdf remains to be done.
   HT to Nico Schlomer.
3. When doing #2, I discovered an error in ncgen.y
   that has remained hidden. This required some other
   test case fixes.
2014-03-08 20:41:30 -07:00
Russ Rew
cfae3cb196 Merge branch 'master' of https://github.com/Unidata/netcdf-c 2014-03-08 16:37:21 -07:00
Russ Rew
8bcd127084 Added execute bit to ncdump/tst_bom.sh script. 2014-03-08 16:35:43 -07:00
Ward Fisher
8f524289f8 Fixed issue in CMakeLists.txt related to how the 'bom' test executable was being built. 2014-03-08 16:06:13 -07:00
dmh
baade3e4fc [NCF-293]
Allow .cdl files to have a leading utf-8 BOM.
Also add test.
2014-03-07 22:52:40 -07:00
dmh
e3545bf88d 1. Allow files to be opened by name multiple
times, but returning the same ncid.
2. Separate out the dap auth tests
   and make them disabled by default.
3. turn of ncdap_test/test_varm3 until
   we can find a copy of coads_climatology.nc
2014-03-07 12:04:38 -07:00
Russ Rew
cb1e4471b5 Removed doxygen man page, since it now is in the User Guide. 2014-03-06 21:15:00 -07:00
Russ Rew
8e59dc3ce8 Merge branch 'master' of https://github.com/Unidata/netcdf-c
Conflicts:
	ncdump/nccopy.c
2014-03-06 21:12:48 -07:00
Russ Rew
dac98c89b5 Typo fixes in install doc. Document nccopy chunk threshold. 2014-03-04 15:03:49 -07:00
Ward Fisher
805a6f5b58 Removed a stray character that caused the build to fail. 2014-03-03 12:24:36 -07:00
Ward Fisher
700a0bf848 Reorganizing NetCDF User's guide document. 2014-03-03 11:29:46 -07:00
Ward Fisher
f6a969cfd5 Updated and consolidated some redundant documentation. 2014-02-25 17:08:04 -07:00
Quincey Koziol
4bfd9b27a0 Merge remote-tracking branch 'upstream/master'
Conflicts:
	libdap2/common34.c
	oc2/ocutil.c
2014-02-11 17:26:09 -06:00
Quincey Koziol
b2dfacbcfa Big clean up to type handling in libsrc4, which makes fill-values work
correctly for variables with string datatype, plus a few other minor changes.
2014-02-11 17:12:08 -06:00
Ward Fisher
9b0a98383a Added CMakeLists.txt to missing Makefile.am files, so that CMake-based builds can be used on source packages generated by make dist 2014-02-06 11:32:32 -07:00
dmh
0f4b72c53b [NCF-286]/e-support:JVN-123940
using cygwin64 causes a couple of bugs during make check.
Fixes are as follows:
1. in ncdump.c and nccopy.c change all occurrences of
   'return EXIT_FAILURE'
   and
   'return EXIT_SUCCESS'
   with
   exit(EXIT_FAILURE)
   and
   exit(EXIT_SUCCESS)
   respectively.
   I have no idea why this works.
2. in libdap2/ncdap3a.c#freeNCDAPCOMMON,
   remove the call to nc_abort, it is
   causing a loop; not sure why this
   is not caught under other operating systems.
2014-02-04 16:26:52 -07:00
Ward Fisher
0032af978b Added INQ_FORMAT_EXTENDED-related tests to the cmake build system (based on inclusion in autotools-based builds). 2014-01-16 13:14:49 -07:00
Quincey Koziol
cd71eb525c Corrected "BAIL" macros to avoid infinite loop when logging is disabled and an
error occurs after an "exit:" label.

Corrected a dozen Coverity errors (mainly allocation issues, along with a few
    other things):
        711711, 711802, 711803, 711905, 970825, 996123, 996124, 1025787,
        1047274, 1130013, 1130014, 1139538

Refactored internal fill-value code to correctly handle string types, and
    especially to allow NULL pointers and null strings (ie. "") to be
    distinguished.  The code now avoids partially aliasing the two together
    (which only happened on the 'write' side of things and wasn't reflected on
    the 'read' side, adding to the previous confusion).

    Probably still weak on handling fill-values of variable-length and compound
    datatypes.

Refactored the recursive metadata reads a bit more, to process HDF5 named
    datatypes and datasets immediately, avoiding chewing up memory for those
    types of objects, etc.

Finished uncommenting and updating the nc_test4/tst_fills2.c code (as I'm
    proceeding alphabetically through the nc_test4 code files).
2013-12-29 01:12:43 -06:00
dmh
582410a407 [NCF-273]/HZY-708311
Add a new function called nc_inq_format_extended that
returns more detailed format information (vis-a-vis
nc_inq_format) about an open dataset.

Note that the netcdf API will present the file as if it had
the format specified by nc_inq_format.  The true file
format, however, may not even be a netcdf file; it might be
DAP, HDF4, or PNETCDF, for example. This function returns
that true file type.  It also returns the effective mode for
the file.

signature: nc_inq_format_extended(int ncid, int* formatp, int* modep)
where
* ncid is the NetCDF ID from a previous call to nc_open() or
  nc_create().
* formatp is a pointer to a location for returned true format.
* modep is a pointer to a location for returned mode flags.

Refer to the actual list in the file netcdf.h to see the
currently defined set.

Also added test cases (tst_formatx*).
2013-12-22 12:53:20 -07:00
dmh
ea7c0fc91b [NCF-280]/TLO-836022
Fix bug where leading backslash digit
in name was not being properly handled.
The reason was that I accidentally attemped to allow \x... and \0...
escapes in identifiers. This make identifiers
with leading escaped digits not work any more.
Also added test case.
2013-11-19 21:58:56 -07:00
dmh
cc95bd3d47 1. [NCF-276]/XXI-796914
Columbia server does not serve up proper
   opendap DDS replies. The Dataset {...} name
   changes depending on if the request has certain
   kinds of constraints.
   Code for a hack was not being used, so restore it.
   The fix is to effectively ignore differences in
   Dataset node names if the code is coming from
   columbia.edu.

2. [NCF-278]
   The ncgen code is improperly typing int64 integer constants
   as uint64.

3. [NCF-279]
   Empty string constants were not being properly
   filled when their target array is length 1 or more.
2013-11-17 14:26:14 -07:00
Russ Rew
3327a3c2c9 Add reference file for ncdump -bc test 2013-11-13 13:45:20 -07:00
Russ Rew
90933c7070 Add ncdump brief annotation test using -bc option 2013-11-13 13:44:03 -07:00
Russ Rew
911bdab962 Fix for bug NCF-275, ncdump -b annotation 2013-11-13 11:03:18 -07:00
Russ Rew
8e18ede2fe Fix full annotation bug described in NCF-275 2013-11-12 06:40:03 -07:00