3 Commits

Author	SHA1	Message	Date
Dennis Heimbigner	93e9d92778	More NCZarr optimizations ... * Replace wholevar with more useful wholechunk optimization * Add optimization to read multiple values at one time * Replace NCDEFAULT_get/put_vars with native nczarr versions. * Clarify chunk projection computations * zdebdispatch.h * Add more chunking test cases and re-enable run_chunkcases * If !szip, then suppress deflate interference test * Make H5Znoop(1) filter produce more information * cleanup bzlib.c API	2021-01-06 13:35:59 -07:00
Dennis Heimbigner	4614690d61	Fix some additional edges cases for mapping slices to chunks ... The code for mapping slices to chunks is wrong for some cases. Fix code and add additional chunking tests to cover edge cases.	2020-12-19 21:17:46 -07:00
Dennis Heimbigner	d2316f866c	Additional Fixes to NCZarr ... Primary Fixes: * Add a whole variable optimization -- used in the rare case that nc_get/put_vara covers the whole of a variable and the variable has a single chunk. * Fix chunking error when stride causes whole chunks to be skipped. * Fix some memory leaks * Add test cases * Add one performance test to nczarr_test/. This uses the timer utils from unit_test: timer_utils.[ch]. * Move ncdumpchunks utility from ncdump to nczarr_test Misc. Other Changes: * Make check for aws libraries conditional on --enable-nczarr-s3 * Remove all but one bm tests from nczarr_test until they are working. * Remove another dependency on HDF5 from supposedly non-HDF5 specific code; specifically hdf5_log_hdf5. * Make the BAIL2 macro be hdf5 specific and replace elsewhere with an HDF5 independent equivalent. * Move hdf5cache.c to libsrc4/nc4cache.c because it is used by nczarr. * Modify unit_tests so that some of them are run even if using Windows. * Misc. small bug fixes and refactors and memory leaks. * Rename some conflicting tests for cmake. * Attempted to make nc_perf work with cmake and failed.	2020-12-16 20:48:02 -07:00