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814 Commits

Author SHA1 Message Date
Dennis Heimbigner
c66f1d53bb missing file 2018-04-14 12:01:52 -06:00
Ward Fisher
e2e2c2117f
Merge branch 'master' into index.dmh 2018-04-02 18:13:34 -06:00
Ed Hartnett
168340a8b6 added test for utf8 normalization for variable rename 2018-03-30 11:26:47 -06:00
Ed Hartnett
0e454a75c2 added fill mode test 2018-03-30 10:20:33 -06:00
Ed Hartnett
af79dfa14d new method of using valgrind 2018-03-28 13:54:05 -06:00
Dennis Heimbigner
1246dd189b merge master 2018-03-20 21:50:58 -06:00
Ward Fisher
36c4b7947d Merge branch 'master' into newhash1.dmh 2018-03-20 11:20:14 -06:00
Dennis Heimbigner
dc8c08f939 forgot to add files to repo 2018-03-17 19:09:49 -06:00
Dennis Heimbigner
cc136cad08 Add a configurable "test case" that will create 
and then open a file with a lot of metadata.
The test is configurable to determine the parameters
for the created metadata.
 2018-03-17 16:25:13 -06:00
Dennis Heimbigner
25f062528b This completes (for now) the refactoring of libsrc4. 
The file docs/indexing.dox tries to provide design
information for the refactoring.

The primary change is to replace all walking of linked
lists with the use of the NCindex data structure.
Ncindex is a combination of a hash table (for name-based
lookup) and a vector (for walking the elements in the index).
Additionally, global vectors are added to NC_HDF5_FILE_INFO_T
to support direct mapping of an e.g. dimid to the NC_DIM_INFO_T
object. These global vectors exist for dimensions, types, and groups
because they have globally unique id numbers.

WARNING:
1. since libsrc4 and libsrchdf4 share code, there are also
   changes in libsrchdf4.
2. Any outstanding pull requests that change libsrc4 or libhdf4
   are likely to cause conflicts with this code.
3. The original reason for doing this was for performance improvements,
   but as noted elsewhere, this may not be significant because
   the meta-data read performance apparently is being dominated
   by the hdf5 library because we do bulk meta-data reading rather
   than lazy reading.
 2018-03-16 11:46:18 -06:00
Ward Fisher
1e0cf1136c
Merge branch 'master' into ncpyfilter.dmh 2018-03-08 15:48:40 -07:00
Ed Hartnett
4e646e03f6 fixed cmake build file 2018-03-05 05:03:46 -07:00
Ed Hartnett
17f7a76356 moved HDF4 tests 2018-03-05 03:45:18 -07:00
Ward Fisher
c359a0e96a
Merge branch 'master' into newhash1.dmh 2018-03-04 22:40:51 -07:00
Dennis Heimbigner
7b324657d4
Merge branch 'master' into ncpyfilter.dmh 2018-03-02 19:49:43 -07:00
Dennis Heimbigner
dd4e71c150 1. Solve issue raised on netcdfgroup mailing list: 
https://www.unidata.ucar.edu/mailing_lists/archives/netcdfgroup/2018/msg00020.html
See docs/filters.md for a detailed description of the solution.
Basically we add nccopy flags "-F none" and "-F <varname>:none"
to suppress output compression as desired.

2. Add tests to nc_test4/tst_filter.sh to test out the solution.
 2018-03-02 16:55:58 -07:00
Ward Fisher
faad52041f Merge branch 'ejh_valgrind_removal_unidata_again' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into pr-aggregation2.wif 2018-03-02 14:22:42 -07:00
Ed Hartnett
49ebcc0e57 fixed problem of test file 2018-02-27 11:10:04 -07:00
Ed Hartnett
64e5742d88 added tst_bug324 to cmake build 2018-02-27 08:53:58 -07:00
Ed Hartnett
45329862a8 removed valgrind stuff 2018-02-27 08:36:12 -07:00
Dennis Heimbigner
8cb1fc4cfe This is the second step in refactoring the libsrc4 code. 
The first was branch newhash0.dmh.

As with newhash0.dmh, these changes should be transparent.
 2018-02-24 20:36:24 -07:00
Ward Fisher
a8faac9292
Merge branch 'master' into classic_ext_ncid 2018-02-22 17:15:34 -07:00
Ward Fisher
8e169175e4
Merge branch 'master' into newhash0.dmh 2018-02-22 14:55:31 -07:00
Ward Fisher
f9f27c5ab7
Merge branch 'master' into newhash0.dmh 2018-02-21 14:19:43 -07:00
Ed Hartnett
9de58cad99
Merge branch 'master' into ejh_extra_tests 2018-02-19 18:52:50 -07:00
Ed Hartnett
ca5f314fc0 minor test cleanup 2018-02-16 09:00:15 -07:00
Ed Hartnett
13fcc67d90
Merge branch 'master' into ejh_hdf4_dispatch_unidata2 2018-02-15 13:25:11 -07:00
Ed Hartnett
b0a8d4ee30 fixed merge issue 2018-02-14 07:58:50 -07:00
Ed Hartnett
41eb0f26c1
Merge branch 'master' into ejh_extra_tests 2018-02-13 15:48:35 -07:00
Ed Hartnett
e5cbf259ba fixed string memory leak 2018-02-13 14:17:15 -07:00
Ed Hartnett
cb4722a0cf fix for memory problem in tst_vars2.c 2018-02-13 13:49:29 -07:00
Ward Fisher
878b107d36 Corrected overflow error in support of https://github.com/Unidata/netcdf-c/issues/861 2018-02-13 12:18:06 -07:00
Ed Hartnett
dd41680f90 added rename test 2018-02-12 10:13:31 -07:00
Ed Hartnett
dbbd5094cb added rename test to CMakeLists.txt 2018-02-12 10:12:49 -07:00
Ed Hartnett
32e2798dde added rename test 2018-02-12 10:08:59 -07:00
Ed Hartnett
70d815b6c8 pulled in some attribute testing that got missed in recent merges 2018-02-12 08:33:20 -07:00
Dennis Heimbigner
727b613459 This is the initial step in moving to the new higher performance 
(I hope) metadata mechanism. This mostly just adds new pieces of
code (e.g. nclistmap) and does some minor fixes.

It should be transparent to everything else.
The next set of changes will be the big step.
 2018-02-08 19:53:40 -07:00
Ed Hartnett
bd77f8865b fixed tst_filter.sh for parallel builds 2018-02-08 07:20:40 -07:00
Ed Hartnett
2358d4a910 moved HDF4 to its own dispatch layer 2018-02-08 06:20:58 -07:00
Ward Fisher
5107655682 Accomodate Visual Studio 2018-02-06 13:32:30 -06:00
Ward Fisher
a640c034f2 Merge branch 'ejh_atts_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-05 11:47:48 -07:00
Ward Fisher
e0577cb251 Merge branch 'ejh_fill_value_string_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-05 11:47:34 -07:00
Ward Fisher
b268f268bd Merge branch 'ejh_dims_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-05 11:43:41 -07:00
Ed Hartnett
0d96ead703
Merge branch 'master' into ejh_dims_unidata 2018-02-05 06:34:04 -07:00
Ward Fisher
c12fca453e Merge branch 'ejh_rename2_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-02 17:57:32 -07:00
Ward Fisher
9b4b2308c6 Merge branch 'ejh_warnings' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-02 17:56:04 -07:00
Ed Hartnett
383a19161a fixed warnings 2018-02-01 07:36:34 -07:00
Ed Hartnett
2afe401f17 another rename fix 2018-02-01 05:10:57 -07:00
Ward Fisher
03446423f7 Merge branch 'patch-12' of https://github.com/gsjaardema/netcdf-c into gsjaardema-batch 2018-01-31 16:24:38 -07:00
Ward Fisher
9a0d1d6501 Merge branch 'patch-14' of https://github.com/gsjaardema/netcdf-c into gsjaardema-batch 2018-01-31 16:21:41 -07:00
Ward Fisher
8c33de7a9a Merge branch 'patch-15' of https://github.com/gsjaardema/netcdf-c into gsjaardema-batch 2018-01-31 16:17:59 -07:00
Greg Sjaardema
30ec6821c3
Missing ERR after api test call 
Missed this one on previous PR.  Another missing ERR after API test if.
 2018-01-31 10:08:48 -07:00
Greg Sjaardema
60a6f34102
Fix missing ERR after if test 
A couple API invocations were missing the ERR macro following the if test.
 2018-01-31 09:17:28 -07:00
Greg Sjaardema
2f44fa49c6
Eliminate unused variables 
Remove variables no longer used after recent refactorings.
 2018-01-31 09:05:35 -07:00
Greg Sjaardema
63b700c40c
Remove V2 code if V2 API not being built 
Remove test code that uses the version 2 API if the version 2 API code is not being activated in the build.

This was originally proposed in #656 with a better fix in #755 which was removed.
 2018-01-31 09:00:17 -07:00
Ed Hartnett
7c936a7bb6 brought in changes from ejh_att 2018-01-31 08:44:33 -07:00
Ed Hartnett
dff3472a2e comment change to trigger travis testing 2018-01-31 07:22:08 -07:00
Ed Hartnett
94c23712b7 extra tests, plus fill value fixes for string type 2018-01-30 14:39:47 -07:00
Ed Hartnett
333b802861 fix dim bad paramter issues 2018-01-30 09:35:56 -07:00
Dennis Heimbigner
d388f0e7f3 - Rename target logical name bzip2 in nc_test4/hdf5plugins in order to avoid 
cmake error CMP0002: duplicate name
- Assuming that all compilers treat floating point constants as double,
  remove d suffix from DBLVAL in nc_test4 and examples/C
 2018-01-25 19:33:23 -07:00
Wei-keng Liao
cb7aafa805 fix issue 791: validate ncid for classic files 2018-01-25 00:03:19 -06:00
Ward Fisher
7f1f02c96d Additional tweaks for make dist. 2018-01-24 18:05:30 -07:00
Ward Fisher
d0339c8902 Merge branch 'pr-catchup' into v4.6.0-release-branch 2018-01-24 15:51:24 -06:00
Ward Fisher
ca814c17f0 Added fenceposts for filter testing. 2018-01-23 18:18:58 -06:00
Dennis Heimbigner
3e47f5f300 Rebuilt the filter parameter handling code to use a common 
parser everywhere.
 2018-01-23 16:00:11 -07:00
Ward Fisher
aac9fad1c4 Merge branch 'ejh_develop_3' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into pr-catchup 2018-01-23 15:32:19 -06:00
Wei-keng Liao
d0c2015ced fix tst_converts.c when enable-erange-fill is set 2018-01-20 15:44:04 -06:00
Ed Hartnett
c329298dc5 merged 760 2018-01-20 07:31:42 -07:00
Ed Hartnett
ef65bdf9af merged 786 2018-01-20 06:06:25 -07:00
Ed Hartnett
da928c1b83 merged 780 2018-01-20 06:05:34 -07:00
Ed Hartnett
9fcc6b62fd merged 769 2018-01-20 06:05:17 -07:00
Dennis Heimbigner
22ebecab23 Use an explicit can_apply function for filters 2018-01-19 18:45:56 -07:00
Dennis Heimbigner
991c4c6d16 Add some extra nccopy filter debug output 2018-01-19 12:06:02 -07:00
Dennis Heimbigner
e723d7dfed Merge branch 'plugins.dmh' of https://github.com/Unidata/netcdf-c into plugins.dmh 2018-01-19 10:58:46 -07:00
Ed Hartnett
986673ff49 attempted to fix parallel build issue 2018-01-19 06:53:04 -07:00
Ed Hartnett
2f7625d19a more test development 2018-01-19 05:19:15 -07:00
Ed Hartnett
196a0b574a more test development 2018-01-19 05:11:07 -07:00
Ed Hartnett
4be1fd82e6 further test development 2018-01-19 04:16:59 -07:00
Ed Hartnett
bc1f103c3d cleaned up h5 checks in nc4grp.c 2018-01-19 03:37:49 -07:00
Ed Hartnett
3f83998b26
Merge branch 'master' into ejh_rename2 2018-01-18 16:05:04 -07:00
Ward Fisher
0f5fc7222b
Merge branch 'master' into plugins.dmh 2018-01-18 15:46:50 -07:00
Ed Hartnett
126d34da1d more tests, error handling 2018-01-18 07:36:52 -07:00
Ed Hartnett
38c7cddf8f further test development, added documentation for uncommitted user-defined types, fixed check of return value 2018-01-18 06:47:50 -07:00
Ed Hartnett
466fac5381 more test development 2018-01-18 05:57:33 -07:00
Ed Hartnett
001483505f rehabilitated tst_types.c 2018-01-18 05:34:52 -07:00
Dennis Heimbigner
090fc98ac9 Merge branch 'plugins.dmh' of https://github.com/Unidata/netcdf-c into plugins.dmh 2018-01-17 19:48:10 -07:00
Dennis Heimbigner
8d8dff9a2a Add some temporary debugging output 2018-01-17 19:47:54 -07:00
Ward Fisher
62abc6af09 Updated CMakeLists.txt to correct an issue seen on OSX when using cmake and running 'make test' directly from nc_test4 2018-01-17 14:00:52 -07:00
Ed Hartnett
9949a11155 removed some unneeded HDF4 checks, added some needed parameter checks 2018-01-17 09:09:58 -07:00
Ward Fisher
ac5aabc3fc Tweaked for parallel autoconf tests with filters. 2018-01-16 17:49:21 -07:00
Ward Fisher
f7b4c61c69 Updated test for OSX 2018-01-16 17:07:52 -07:00
Ward Fisher
606b782adf Corrected a build issue on OSX 2018-01-16 16:39:58 -07:00
Ed Hartnett
e6f82ae397 further test development 2018-01-16 14:57:40 -07:00
Ed Hartnett
3af0e84314 test development 2018-01-16 14:38:09 -07:00
Ed Hartnett
3a0385da3e test development 2018-01-16 14:36:47 -07:00
Dennis Heimbigner
70068d7d32 With Ward's help, I figured out how to 
obviate the need for build type under
cmake+Visual-studio. This simplified
findplugin.in.
 2018-01-16 13:28:30 -07:00
Dennis Heimbigner
99fccab359 1. Keep up to date by merging master 
2. Fixed plugin building (nc_test4/hdf5plugins)
   to be done properly by cmake and automake.
4. Duplicated part of the nc_test4 filter test code
   in examples/C

An incomplete and untested set of hooks exist
for OS-X in nc_test4/findplugins.in. They need testing.
 2018-01-16 11:00:09 -07:00
Ed Hartnett
3626c776ae test development 2018-01-16 09:43:41 -07:00
Ed Hartnett
0862d6d7ce removed MPE calls 2018-01-16 09:23:36 -07:00
Ed Hartnett
d77ac20af4 more test cleanup 2018-01-16 08:14:43 -07:00
Ed Hartnett
f603ab2163 more test cleanup 2018-01-16 08:09:14 -07:00
Ed Hartnett
ba518b80a7 more test cleanup 2018-01-16 08:09:03 -07:00
Ed Hartnett
f716ac8549 more test cleanup 2018-01-16 08:06:23 -07:00
Ed Hartnett
1bd6387e5e clean up of test 2018-01-16 08:04:00 -07:00
Ed Hartnett
de150aec4e clean up of test 2018-01-16 08:03:15 -07:00
Ed Hartnett
3fa3d3f9f9 ported rename fix changes from branch ejh_fill_values for easy merging 2018-01-05 06:01:22 -07:00
Levi Naden
978e83d28a Fix another test typo 2018-01-02 11:43:15 -05:00
Levi Naden
6a24ca4366 Fix typo 2018-01-02 11:39:09 -05:00
Levi Naden
f6fc9c183b Allow multiple vars with different chunks on the same unlimited dim 
Fix #299
The conditions to make this error are the following:
* Two variables with different chunk sizes
* Both variables write on the same unlimited dimension
* The first variable has already written data when the second variable is created
 2018-01-02 11:37:01 -05:00
Ward Fisher
77cca75977
Merge branch 'master' into ejh_more_tests 2017-12-07 20:24:43 -07:00
Ward Fisher
0ef6f3415a Making tst_hdf4_read_var.sh dependent on tst_interops2. 2017-12-06 15:07:54 -07:00
Ed Hartnett
ea49cc1d3f merged ejh_notbuilt_errors 2017-12-04 13:23:31 -07:00
Ed Hartnett
2066232dc0 more tests, more interanl documentation 2017-12-03 06:05:37 -07:00
Ed Hartnett
bf6dab14e0 fixed error value from nc4_find_g_var_nc() when ncid is bad 2017-12-03 04:06:56 -07:00
Ed Hartnett
9e4c564656 more tests 2017-12-02 18:00:22 -07:00
Ed Hartnett
8055c1cede more tests 2017-12-02 17:43:46 -07:00
Ed Hartnett
996e39373f more test 2017-12-02 15:52:49 -07:00
Ed Hartnett
1cf8177f45 more test 2017-12-02 15:43:40 -07:00
Ed Hartnett
ea63ff526f more tests 2017-12-02 08:05:17 -07:00
Ed Hartnett
bfeb8d4e0b more testing 2017-12-02 07:38:01 -07:00
Ed Hartnett
7cd344f7b0 removed redundant check in NC4_def_var() 2017-12-02 07:23:23 -07:00
Ed Hartnett
6c3aa79684 more testing of nc_set_var_chunk_cache_ints 2017-12-02 07:15:19 -07:00
Ed Hartnett
d840bc7160 starting adding testing for _int() functions for caching 2017-12-02 06:52:13 -07:00
Ed Hartnett
300236cd8c more tests 2017-12-01 15:08:22 -07:00
Ed Hartnett
58f422e2a8 more tests 2017-12-01 14:33:32 -07:00
Ed Hartnett
acbd3e259e more tests 2017-12-01 13:58:13 -07:00
Ed Hartnett
ded01e0aba more tests 2017-12-01 13:15:58 -07:00
Ed Hartnett
a8e9c196e2 more tests, fixed documentation warnings 2017-12-01 13:02:59 -07:00
Ed Hartnett
42c482d33c more tests 2017-12-01 11:20:09 -07:00
Ed Hartnett
ce1df112a5 more testing for nc4var.c functions 2017-12-01 09:38:32 -07:00
Ed Hartnett
2023ed6b7c fixed problems with bad inputs to nc_def_Var 2017-12-01 09:08:12 -07:00
Ed Hartnett
34c9248e6f
Merge branch 'master' into ejh_notbuilt_errors 2017-11-28 17:16:56 +00:00
Ed Hartnett
3c5404ccf7
Merge branch 'master' into ejh_ncfunc_testing 2017-11-28 00:04:38 +00:00
Ed Hartnett
ce97137318 removed properties from tst_interops3 which is no longer a test in CMake build 2017-11-26 09:07:34 -07:00
Ed Hartnett
bebe7e1e9d merged master 2017-11-26 07:06:02 -07:00
Nehal J Wani
1b91bd89d4
Fix build on pre-C99 compilers 
- Make sure that the variables are declared at the top of the block.
 - Add fix to enable inline for various compilers
 2017-11-26 01:47:54 +05:30
Ed Hartnett
8011fab382 now run tst_large2, also cleaned up some more warnings 2017-11-24 10:50:07 -07:00
Ed Hartnett
273b1d5bf9 merged ejh_check_test 2017-11-24 10:12:54 -07:00
Ed Hartnett
fa7f17a8c8 got cmake working with HDF4 format test 2017-11-24 06:05:55 -07:00
Ed Hartnett
b4bccb60b3 fixing test order problem 2017-11-23 07:18:12 -07:00
Ed Hartnett
60d1d6271d fixing order in CMake 2017-11-23 04:52:19 -07:00
Ed Hartnett
843db9798f finally got my distcheck act together by moving hdf4 file test to nc_test4 2017-11-23 04:41:03 -07:00
Ward Fisher
394ee6a1e0 Corrected typo, more enhancements in CMakeLists.txt 2017-11-22 13:34:56 -07:00
Ed Hartnett
d64550d3f0
Merge branch 'master' into ejh_notbuilt_errors 2017-11-22 17:14:24 +00:00
Ed Hartnett
3a48f59de3 removed legacy test that was no longer being run 2017-11-21 19:46:05 -07:00
Ed Hartnett
c8a2d53d34 fixes HDF4 build with cmake 2017-11-20 08:25:47 -07:00
Ed Hartnett
eecade6af9
Merge branch 'master' into ejh_notbuilt_errors 2017-11-18 21:24:11 +00:00
Ed Hartnett
d7c1dd82c3 fixed hdf4 test that should not run if utilities not built 2017-11-18 07:36:24 -07:00
Ed Hartnett
3b0c301d76 moved tst_bug324 in Cmake build from ncdump to nc_test4 2017-11-16 11:57:39 -07:00
Ed Hartnett
4f43b80320 moved test from ncdump to nc_test4 2017-11-16 11:30:35 -07:00
Ed Hartnett
7a2d62afe4 merging branches into develop 2017-11-15 11:26:29 -07:00
Ed Hartnett
83c2395238 merging branches into develop 2017-11-15 11:25:42 -07:00
Ed Hartnett
2baf95e09d
Merge branch 'master' into ejh_turn_tests_on 2017-11-15 03:40:56 -07:00
Ed Hartnett
92a995e521
Merge branch 'master' into ejh_large_file_test_3 2017-11-15 03:39:42 -07:00
Ed Hartnett
e928964e9e
Merge branch 'master' into ejh_notbuilt_errors 2017-11-15 03:38:49 -07:00
Ed Hartnett
0e58aa412d fixed memory leak in tst_filterparser 2017-11-14 09:05:35 -07:00
Ward Fisher
16d6f94f30 Merge branch 'master' into filters.dmh 2017-11-13 11:15:02 -07:00
Ed Hartnett
03753c0344 now return NC_ENOTBUILT for not built library features 2017-11-13 08:09:15 -07:00
Ed Hartnett
cb32451cf5 turned on some commented out test code 2017-11-10 05:01:32 -07:00
Ed Hartnett
df31f07830
Merge branch 'master' into ejh_make_j_3 2017-11-10 02:53:07 -07:00
Ward Fisher
a9dde277d7 Merge branch 'ejh_enum_mem_fix' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into more_ejh_pulls 2017-11-09 16:11:17 -07:00
Ed Hartnett
e792d992b1 fixed names of output files to enable parallel builds 2017-11-09 07:21:00 -07:00
Ed Hartnett
b9911d6e6f took out most uses of EXTRA_TESTS, returned it to disabled by default 2017-11-08 13:25:23 -07:00
Ed Hartnett
6653eeaf7f
Merge branch 'master' into ejh_turn_tests_on 2017-11-07 18:35:16 -07:00
Ed Hartnett
a72d5b4d16
Merge branch 'master' into ejh_enum_mem_fix 2017-11-07 18:34:55 -07:00
Ward Fisher
e7fee3ee53 Corrected an issue encountered by the default compiler on ARM. 2017-11-07 15:19:07 -07:00
Ward Fisher
b92ae0cdbc Merge branch 'ejh_fix_use_cdf' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into more_ejh_pulls 2017-11-07 14:14:10 -07:00
Ed Hartnett
c58bc3e41c fixed warnings 2017-11-06 06:06:47 -07:00
Ed Hartnett
7af77fd6a9
Merge branch 'master' into ejh_turn_tests_on 2017-11-05 10:09:08 -07:00
Ed Hartnett
6ce15853d6 fixed ENABLE_CDF5 issue in some tests 2017-11-05 09:06:48 -07:00
Ed Hartnett
7872785cf0
Merge branch 'master' into ejh_enum_mem_fix 2017-11-03 19:44:40 -06:00
Ward Fisher
f98635be1b Merge remote-tracking branch 'origin/h5offset.dmh' into dmh_multi_merge 2017-11-03 12:40:52 -06:00
Ed Hartnett
b257353b18 fixed commented out tests 2017-11-03 08:14:08 -06:00
Ed Hartnett
406e979fb4 fixed tst_enums memory issue 2017-11-01 04:31:12 -06:00
Ed Hartnett
86f35ea6db
Merge branch 'master' into ejh_more_mem_3 2017-10-30 07:34:52 -06:00
Dennis Heimbigner
2d77e6451b Master merge 2017-10-28 14:06:39 -06:00
Dennis Heimbigner
261ed4c99d Merge branch 'master' into h5offset.dmh 2017-10-27 12:33:17 -06:00
Ed Hartnett
9f72f5adf4 fixed memory error in tst_fills2.c 2017-10-27 06:26:36 -06:00
Ed Hartnett
22d3d152f0 removed tst_h_atts2.c 2017-10-26 04:55:30 -06:00
Ed Hartnett
30ef103a95 moved tests from tst_h_atts2 into tst_xplatform2 2017-10-26 04:49:57 -06:00
Ward Fisher
8e30bb9a1c Merge branch 'ejh_test_mem_leak' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into merge_small_pulls 2017-10-25 11:01:25 -06:00
Ward Fisher
fb38f81243 Merge branch 'ejh_ncdump' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into merge_small_pulls 2017-10-25 11:00:20 -06:00
Dennis Heimbigner
9983b9d911 re e-support UBS-599337 
re pull request https://github.com/Unidata/netcdf-c/pull/405
re pull request https://github.com/Unidata/netcdf-c/pull/446

Notes:
1. This branch is a cleanup of the magic.dmh branch.
2. magic.dmh was originally merged, but caused problems with parallel IO.
   It was re-issued as pull request https://github.com/Unidata/netcdf-c/pull/446.
3. This branch + pull request replace any previous pull requests and magic.dmh branch.

Given an otherwise valid netCDF file that has a corrupted header,
the netcdf library currently crashes. Instead, it should return
NC_ENOTNC.

Additionally, the NC_check_file_type code does not do the
forward search required by hdf5 files. It currently only looks
at file position 0 instead of 512, 1024, 2048,... Also, it turns
out that the HDF4 magic number is assumed to always be at the
beginning of the file (unlike HDF5).
The change is localized to libdispatch/dfile.c See
https://support.hdfgroup.org/release4/doc/DSpec_html/DS.pdf

Also, it turns out that the code in NC_check_file_type is duplicated
(mostly) in the function libsrc4/nc4file.c#nc_check_for_hdf.

This branch does the following.
1. Make NC_check_file_type return NC_ENOTNC instead of crashing.
2. Remove nc_check_for_hdf and centralize all file format checking
   NC_check_file_type.
3. Add proper forward search for HDF5 files (but not HDF4 files)
   to look for the magic number at offsets of 0, 512, 1024...
4. Add test tst_hdf5_offset.sh. This tests that hdf5 files with
   an offset are properly recognized. It does so by prefixing
   a legal file with some number of zero bytes: 512, 1024, etc.
5. Off-topic: Added -N flag to ncdump to force a specific output dataset name.
 2017-10-24 16:25:09 -06:00
Ed Hartnett
1e3831f98d fixed memory leak and warnings in test 2017-10-24 12:54:29 -06:00
Ed Hartnett
6363cae315 fixed warnings 2017-10-24 12:18:20 -06:00
Ed Hartnett
d6eb9f9f5c fix for tst_vars.c memory overflow 2017-10-24 09:20:41 -06:00
Dennis Heimbigner
0b87770dab add files to git 2017-10-10 16:38:35 -06:00
Dennis Heimbigner
111248e067 Changed to make little-endian the standard for 64-bit parameters 2017-10-10 11:21:01 -06:00
Dennis Heimbigner
5ff3909704 Fix bug in nc4file.c where it improperly handled filters with more than 4 parameters. 2017-10-09 21:24:56 -06:00
Dennis Heimbigner
733da154c5 1. Keep up to date by merging master 
2. Factored out the parameter string parsing for ncgen and nccopy
   int libdispatch/dfilter.c + include/ncfilter.h
3. Allow a parameter string to use constant types other than
   unsigned int. See docs/filters.md for details.
4. Moved the old content of  include/netcdf_filter.h into include/netcdf.h
   and removed include/netcdf_filter.h as no longer needed.
5. Force the test filter (bzip2) in nc_test4/filter_test to
   be built using BUILT_SOURCES.
 2017-10-08 15:56:45 -06:00
Dennis Heimbigner
3cc3b6a4a1 add known szip file against which to test 2017-09-04 18:37:13 -06:00
Dennis Heimbigner
dab3d0da8e Fix CMake problem with executable naming 2017-08-30 12:06:23 -06:00
Dennis Heimbigner
d8d4ed627a master merge 2017-08-29 18:05:46 -06:00
Dennis Heimbigner
2e1e39ca8c Add a general szip test script 2017-08-28 18:11:24 -06:00
Dennis Heimbigner
e2b2d6cf6c Add more comprehensive tests 2017-08-28 14:56:01 -06:00
Dennis Heimbigner
99e4250d6d Get szip working under cmake 2017-08-27 20:38:37 -06:00
Dennis Heimbigner
9afef60648 Add tst_szip to Cmake 2017-08-27 15:51:45 -06:00
Dennis Heimbigner
ed44fd7306 Add szip support via libaec 2017-08-27 13:35:20 -06:00
Dennis Heimbigner
5085df7595 1. Add discussion of parameter encoding, esp in face of byte-order, 
to docs/filter.md
2. Moved location of filter.md in documentation
3. Add a template file as the basis for building new filters.
4. Did some test case cleanup
 2017-08-21 19:54:06 -06:00
Dennis Heimbigner
86fc8745dc merge master and resolve conflicts 2017-08-12 15:50:31 -06:00
Dennis Heimbigner
7f31358ee2 As a result of helping a user trying to build the filter test on 
a linux variant system, I made some changes to (one hopes)
incorporate some improvements in documenting and building this test.
 2017-07-25 15:57:00 -06:00
Ward Fisher
f1f7224f93 Corrected a false positive. 2017-06-01 09:36:54 -06:00
Ward Fisher
1f96a66414 hdf4 chunking file rename 2017-06-01 09:15:41 -06:00
Ward Fisher
a077289464 Refactored hdf4 chunking test a little bit. 2017-06-01 09:11:52 -06:00
Ward Fisher
08f7d06eb6 Refactoring hdf4 chunking test in similar fashion to hdf5 compatibility test. Files are linked via AC_CONFIG_LINKS instead of shuffling things around in a shell script. 2017-06-01 09:02:31 -06:00
Ward Fisher
128fb5611a Trying distcleanfiles experiment. 2017-06-01 08:53:31 -06:00
Ward Fisher
df872ac1bc Continued refactoring. 2017-05-31 16:34:46 -06:00
Ward Fisher
05e2ff3881 Sorting out hdf4 chunk tests. 2017-05-31 15:09:26 -06:00
Ward Fisher
5699a32376 Updated cleanfiles list on Makefile.am 2017-05-31 15:01:02 -06:00
Ward Fisher
9823d73c44 Corrected a logic error. 2017-05-31 14:04:53 -06:00
Ward Fisher
03c67cb4ff Updated src path in hdf4 chunk test. 2017-05-31 13:38:22 -06:00
Ward Fisher
9a8af9184a Copying files as needed for hdf4 tests. 2017-05-31 11:25:35 -06:00
Dennis Heimbigner
d37ac215e2 Add new capabilities to filter code: 
1. Allow nccopy to apply filters, especially on the output file.
   This provides a third way to do this other than using ncgen or
   programatically
2. Make sure that even if the filter code is not available, it is
   possible to see the filter id and parameters for variables using
   e.g ncdump -hs.
3. Fix bug in nccopy so that the input file does
   not necessarily have to be netcdf-4.
4. At last minute decided to change to using a
   single "_Filter" attribute for ncgen
5. Added a test to tst_filter.sh to generate C code using ncgen.
 2017-05-14 18:10:02 -06:00
Dennis Heimbigner
c834d4af12 merge from master 2017-05-10 12:33:03 -06:00
Dennis Heimbigner
7c3164577e Finalize the compression support. 
This relies on the HDF5 capability to
dynamically load compression filters.
Note that a compression filter is just
a subcase of filters.

The primary user-visible changes are as follows:
1. Add a standard header "netcdf_filter.h" that defines
   the necessary API extensions
2. Modify ncgen to support two new special attributes
   "_Filter_ID" and "_Filter_Parameters" so that compression
   can be turned on when creating a file using ncgen.
4. Add a detailed description of filtering support
   to the user's guide; see the file filters.md
5. Add a test case directory for this: nc_test4/filter_test.
   It is fragile and a ./configure flags (-enable-filter-test)
   is defined (default disabled) to shut this off this test
   to avoid spurious 'make check' failures.

Note that the HDF5 documentation is not up-to-date, so
much of what is encoded here comes from examining the
actual code in the file H5PL.c in the HDF5 source code.
 2017-04-27 13:01:59 -06:00
Ward Fisher
8dddd222a3 Merged master, DAP4 support into branch. 2017-04-19 09:29:35 -06:00
Ward Fisher
b5b99cbebb Merge branch 'master' into ghpull-375 2017-04-05 16:24:55 -06:00
Dennis Heimbigner
6d8809100f Fix pull request https://github.com/Unidata/netcdf-c/pull/374 (dap4.dmh) 
1. When running under windows (as opposed to cygwin)
   we need to make sure to not user /cygdrive/ file paths.
   This was ocurring in libdap4/d4read.c, but may occur
   elsewhere.
2. Shell scripts in the git repo are not being checked-out
   with the executable mode set. Had core.filemode set to false.
   Was a major hassle to fix.
 2017-04-03 21:39:44 -06:00
Dennis Heimbigner
5f15c9e777 1) master merge 2)fix uname -o problem 2017-03-30 16:21:31 -06:00
Wei-keng Liao
1508bd5529 fix the previous commit that missed the case of re-open file 2017-03-29 12:16:25 -05:00
Dennis Heimbigner
80390b94e5 keep up-to-date with master 2017-03-27 12:16:24 -06:00
Wei-keng Liao
73ccb364a9 To solve NC_ELATEFILL error for NetCDF-4 files, mark all variables written at enddef. 2017-03-24 20:55:00 -05:00
Ward Fisher
eeb673bf8c Merge branch 'master' into ghpull-375 2017-03-22 11:24:56 -06:00
Stephan Hoyer
4dd8e380c1 Switch NC_CHAR on netCDF4 to use ASCII 
Fixes GH298
 2017-03-13 20:12:08 -07:00
Dennis Heimbigner
3db4f013bf Primary change: add dap4 support 
Specific changes:
1. Add dap4 code: libdap4 and dap4_test.
   Note that until the d4ts server problem is solved, dap4 is turned off.
2. Modify various files to support dap4 flags:
	configure.ac, Makefile.am, CMakeLists.txt, etc.
3. Add nc_test/test_common.sh. This centralizes
   the handling of the locations of various
   things in the build tree: e.g. where is
   ncgen.exe located. See nc_test/test_common.sh
   for details.
4. Modify .sh files to use test_common.sh
5. Obsolete separate oc2 by moving it to be part of
   netcdf-c. This means replacing code with netcdf-c
   equivalents.
5. Add --with-testserver to configure.ac to allow
   override of the servers to be used for --enable-dap-remote-tests.
6. There were multiple versions of nctypealignment code. Try to
   centralize in libdispatch/doffset.c and include/ncoffsets.h
7. Add a unit test for the ncuri code because of its complexity.
8. Move the findserver code out of libdispatch and into
   a separate, self contained program in ncdap_test and dap4_test.
9. Move the dispatch header files (nc{3,4}dispatch.h) to
   .../include because they are now shared by modules.
10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts.
11. Make use of MREMAP if available
12. Misc. minor changes e.g.
	- #include <config.h> -> #include "config.h"
	- Add some no-install headers to /include
	- extern -> EXTERNL and vice versa as needed
	- misc header cleanup
	- clean up checking for misc. unix vs microsoft functions
13. Change copyright decls in some files to point to LICENSE file.
14. Add notes to RELEASENOTES.md
 2017-03-08 17:01:10 -07:00
Ward Fisher
3e5124996e Merged https://github.com/Unidata/netcdf-c/pull/319 to resolve some recently arisen conflicts, in preparation for larger merge. 2017-02-01 13:27:29 -07:00
Ward Fisher
8a2e722373 Corrected a failure in tst_fill_attr_vanish.c seen under Visual Studio 11 2017-01-11 12:36:30 -07:00
Wei-keng Liao
ab73a57fca Merge branch 'master' into issue258 2016-11-25 10:49:03 -06:00
Ward Fisher
b4785f4081 Housekeeping on large file tests. 2016-11-18 15:48:58 -07:00
Wei-keng Liao
04e5ff4c74 sync with master branch 2016-10-28 11:54:25 -05:00
Ward Fisher
eb5be645ea Added missing err_macros.h to tst_parallel.c 2016-10-25 12:00:39 -06:00
Ward Fisher
174aa62d75 Added missing err_macros.h to tst_parallel4.c 2016-10-25 11:59:27 -06:00
Ward Fisher
d8c04ead27 Added missing err_macros.h to tst_nc4perf.c 2016-10-25 11:58:24 -06:00
Ward Fisher
c9ca03deee Added missing err_macros.h to tst_parallel3.c 2016-10-25 11:57:22 -06:00
Ward Fisher
414ef40ca1 Added missing err_macros.h to tst_mode.c 2016-10-25 11:56:25 -06:00
Ward Fisher
938b27bd84 Added missing err_macros.h to tst_mpi_parallel.c 2016-10-25 11:54:25 -06:00
Ward Fisher
4feadbfd22 Additional updates in support of https://github.com/Unidata/netcdf-c/issues/321 2016-10-24 17:16:58 -06:00
Ward Fisher
be9eeb1c96 Corrected missing include in a couple of hdf4 tests. 2016-10-21 13:55:49 -06:00
Ward Fisher
873b9e9557 Removed an old benchmark test for which the source data appears to be long gone. 2016-10-21 19:48:14 +00:00
Ward Fisher
dd557c1919 Updated an old benchmark script and ref files to accomodate updated metadata reported by ncdump. 2016-10-21 19:42:14 +00:00
Ward Fisher
1c11fc5d59 More refactoring, pushing to avoid accidental loss. 2016-10-21 19:24:40 +00:00
Ward Fisher
157af11bc2 Refactoring tests to separate out error macros from tests, in support of fixing http://github.com/Unidata/netcdf-c/issues/321 2016-10-21 17:17:39 +00:00
Wei-keng Liao
dd19b27b44 handle special case when calling _uchar APIs to access NC_BYTE attributes/variables in CDF-2 file format 2016-10-06 00:48:01 -05:00
Ward Fisher
c179cf0c5f Updated cmakelists.txt for the final test failure. 2016-08-31 15:53:34 -06:00
Ward Fisher
486f69522c Merged utility-based tests fix into cmake-based builds. 2016-08-31 15:48:10 -06:00
Ward Fisher
b2e4b74e3a Restricted tests from running when they require the utilities but the utilities were not built, in autoconf-based tests. See https://github.com/Unidata/netcdf-c/issues/313 for more information. 2016-08-31 15:38:59 -06:00
tbeu
eae6d75d47 Test all three files for compatibility 2016-07-18 22:18:42 +02:00
Ward Fisher
2fe943d32e Wiring in test contributed by Greg Sjaardema in support of https://github.com/Unidata/netcdf-c/issues/282 2016-07-12 16:58:49 -06:00
Ward Fisher
5452f7f1ab Added new test to autoconf-based builds and make dist, in support of https://github.com/Unidata/netcdf-c/issues/281 2016-06-30 12:11:05 -06:00
Ward Fisher
46c63344f7 Added comments where needed. 2016-06-14 10:47:24 -06:00
Ward Fisher
1ebb104f74 Tentatively fixed https://github.com/Unidata/netcdf-c/issues/239 but the test needs to be extended. 2016-06-10 17:03:08 -06:00
Ward Fisher
f248ef7714 Merge branch 'master' into gh239 2016-06-10 13:16:10 -06:00
Ward Fisher
b2b8499f53 Got distcheck working, corrected some parallel test logic in cmakelists. 2016-06-09 13:21:28 -06:00
Ward Fisher
ea2e9959f5 Corrected a typo. 2016-06-09 13:08:18 -06:00
Ward Fisher
54b57d0e60 Gave the modified test a unique test file name. 2016-06-09 11:28:03 -06:00
Ward Fisher
2610b58a5d Corrected a typo. 2016-06-09 11:26:06 -06:00
Ward Fisher
10061af1b9 Wiring in parallel test. 2016-06-09 11:23:14 -06:00
Ward Fisher
d3b6512606 Fleshing out test, we now have it failing as one would expect. 2016-06-06 22:10:10 +00:00
Ward Fisher
aae3526b75 Fleshing out the test. 2016-06-06 21:44:38 +00:00
Ward Fisher
0dae521f13 Trying to sort out what's going on with the test. 2016-06-06 15:08:20 -06:00
Ward Fisher
dc1a9c34d8 Added a document to catalog what the various tests are. 2016-06-06 14:51:57 -06:00
Ward Fisher
305f5b352d Corrected an issue with running the hdf4 test. 2016-06-02 14:34:13 -06:00
Ward Fisher
f19749425f Wired hdf4 per-variable test into autoconf. 2016-06-02 14:22:42 -06:00
Ward Fisher
2d0de087fa Fleshed out test script, wired into cmakelists.txt 2016-06-02 14:19:36 -06:00
Ward Fisher
ab43f75416 added blank file for testing that hdf4 file can be read a var at a time. 2016-06-02 14:09:35 -06:00
Dennis Heimbigner
835511eaeb HDF5 is generating unnecessary error messages when netcdf4 logging is enabled 
re: github netcdf-c issue #271

This occurs for several reasons, including:
1. using H5Aopen_name instead of H5Aexists to test if attribute exists.
2. using H5Eset_auto instead of H5Eset_auto2.
There are probably others that will have to be extinguished as encountered.
p.s Hope I did not overdo this and kill too much.
 2016-05-27 10:08:01 -06:00
Dennis Heimbigner
22a343292a Fix cmake build: 2016-05-24 20:26:09 -06:00
Dennis Heimbigner
c8572f0bee set tst_misc.sh executable 2016-05-24 19:37:21 -06:00
Dennis Heimbigner
8c1f8f57ee re: https://github.com/Unidata/netcdf-c/issues/269 
The hash field for phony dimensions was not being set
(in nc4hdf.c). Also added test case (nc_test4/?).
Note that I searched for other similar failures and
did not find any, but I may have missed them.
 2016-05-24 19:37:21 -06:00
Dennis Heimbigner
11a259ad86 Add provenance info for netcdf-4 files. 
This consists of a persistent attribute named
_NCProperties plus two computed attributes
_IsNetcdf4 and _SuperblockVersion.
See the 'Provenance Attributes' section
of docs/attribute_conventions.md for details.
 2016-05-07 14:32:07 -06:00
Ward Fisher
580b4aabe1 Integrated one-line pull request https://github.com/Unidata/netcdf-c/pull/249 2016-04-12 09:30:22 -06:00
Ward Fisher
4b2c9f29dd Wired in test for https://github.com/Unidata/netcdf-c/issues/250 for autotool based builds. 2016-04-08 15:53:17 -06:00
Ward Fisher
493a6e5d62 Found pre-existing call to H5Pset_libver_bounds, modified it so that the generated files would be created without the 1.10 specific things. 2016-04-08 21:36:08 +00:00
Ward Fisher
46b534d060 Roughed in test for checking that a netcdf installation can read specific files written by a netCDF4 library built against libhdf5 1.10.0 2016-04-08 20:58:20 +00:00
Ward Fisher
a75cb302df Removed an error in nc_test4/Makefile.am 2016-02-19 11:06:56 -07:00
Ward Fisher
dde10a7461 Corrected a missing suffix in Makefile.am 2016-02-19 10:52:16 -07:00
Ward Fisher
1affd12fc8 Wired tests for https://github.com/Unidata/netcdf-c/issues/221 into a shell script so that the generated files can be checked easily with ncdump. Added the test and associated files to both cmake and autotools build systems. 2016-02-19 10:16:42 -07:00
Ward Fisher
e2eda755e3 Tweaked empty test to check for limited, unlimited dimensions. Also added a gdb command file for ease of debugging. 2016-02-18 13:59:53 -07:00
Ward Fisher
0eff434098 Renamed test file to be more reflective for what it is doing. 2016-02-16 14:54:10 -07:00
Ward Fisher
4ccad07a6b Have duplicated issue reported in #221 at github. 2016-02-16 14:52:03 -07:00
Ward Fisher
654a6e39e3 Additional work debugging issue. 2016-02-16 14:40:09 -07:00
Ward Fisher
1807cb7aa2 Roughing in a test to create the failure described in https://github.com/Unidata/netcdf-c/issues/221 2016-02-16 11:00:09 -07:00
Ward Fisher
55b24e2964 Added tst_mode to CMakeLists.txt 2016-02-04 19:12:15 +00:00
Dennis Heimbigner
45572f5971 Fix github issue: https://github.com/Unidata/netcdf-c/issues/208 
Return an error when specifying deflation (compression) or fletcher32 on
a file created for parallel IO in netcdf-4.
 2016-02-01 16:15:58 -07:00
Ward Fisher
427577be8d Merge branch 'gsjaardema-patch-6' into pull-consolidation 2016-01-26 10:10:54 -07:00
Greg Sjaardema
e1696187ec Replace NC_MAX_DIMS with NC_MAX_VAR_DIMS 
Same issue as in #197.
 2016-01-25 14:55:29 -07:00
Greg Sjaardema
ba7d9c54bd Replace NC_MAX_DIMS with NC_TESTS_MAX_DIMS 
Missed this file earlier somehow.  Same situation as fixed in fbc210f
 2016-01-25 14:47:52 -07:00
Ward Fisher
fbc210f511 Alternative solution to https://github.com/Unidata/netcdf-c/pull/199 and https://github.com/Unidata/netcdf-c/pull/200. 2016-01-25 14:09:03 -07:00
Ward Fisher
f3cae2e6ce Merge branch 'master' of https://github.com/Unidata/netcdf-c 2016-01-25 11:29:12 -07:00
Greg Sjaardema
04f1231f48 Fix incorrect array size specification 
The count and start arrays are dimensioned to NC_MAX_DIMS even though the maximum size should be NDIMS which is set to 3; possibly, the maximum size could be 2 since only indices 0 and 1 are used to access both start and count.  I left it at NDIMS since that matches the number of items in the initialization and is consistent with other uses in the file.
 2016-01-22 21:03:48 -07:00
Greg Sjaardema
e13d976e27 Replace NC_MAX_DIMS with correct NC_MAX_VAR_DIMS 
The constant NC_MAX_DIMS is used to dimension the `dimids` arrays which are use to retrieve the dimension ids corresponding to the variables dimensions.  By definition, the maximum number of dimension ids is `NC_MAX_VAR_DIMS` as is documented in the `nc_inq_var` documentation:
http://www.unidata.ucar.edu/software/netcdf/netcdf-4/newdocs/netcdf-c/nc_005finq_005fvar.html

dimids   Returned vector of *ndimsp dimension IDs corresponding to the variable dimensions. The caller must allocate enough space for a vector of at least *ndimsp integers to be returned. The maximum possible number of dimensions for a variable is given by the predefined constant NC_MAX_VAR_DIMS. 

Although the default or standard values of NC_MAX_DIMS and NC_MAX_VAR_DIMS are the same, the correct value to be used here is NC_MAX_VAR_DIMS and not NC_MAX_DIMS.  Even though this currently works, it could fail if either NC_MAX_VAR_DIMS or NC_MAX_DIMS is changed and it can also provide an incorrect function usage example that may mislead developers trying to determine the correct usage of the function.
 2016-01-22 20:54:52 -07:00
Ward Fisher
bb332ac08a Added a missing file to EXTRA_DIST. 2016-01-13 10:25:18 -07:00
Greg Sjaardema
ccb9682288 Merge branch 'master' into max_vars_dims_cleanup 2015-11-30 10:37:07 -05:00
Greg Sjaardema
724453b113 Update comments related to NC_MAX_VARS and NC_MAX_DIMS 2015-11-30 10:28:06 -05:00
Ward Fisher
03f7b56879 Cleaned up a sloppy cut-and-paste on my part. 2015-11-23 15:49:24 -06:00
Ward Fisher
bf0279e229 Added new test in support of https://github.com/Unidata/netcdf-c/issues/160 2015-11-23 15:48:24 -06:00
Ward Fisher
c000899df2 Added a test in support of issue https://github.com/Unidata/netcdf-c/issues/160. 2015-11-23 15:42:22 -06:00
Ward Fisher
ccd824a77f Added new test to distribution file list. 2015-11-11 14:27:25 -07:00
Ward Fisher
5065b01d37 Wired in a new test based on one provided by Jeff Whitaker in support of issue 149 on github. See https://github.com/Unidata/netcdf-c/issues/149. 2015-11-11 10:42:49 -07:00
Ward Fisher
c1210f4020 Merge branch 'master' into cdf5-sync-master 2015-11-09 13:45:11 -07:00
dmh
5ad26bb68f Fix github issues #140 
1. Added check to libsrc4/nc4var.nc_def_var_extra to
   check that the no specified chunks size is greater than
   the dimension size.

2. Added test to nc_test4/tst_chunks.c
 2015-11-07 20:29:16 -07:00
Ward Fisher
612b35a84c Merge branch 'master' into cdf-5, in preparation for merging the CDF-5 functionality into the master branch. This will be the key new feature for netcdf 4.4.0. 2015-11-05 13:40:35 -07:00
Ward Fisher
a81773e5bf Corrected an issue Visual Studio has with how externals are managed. 2015-11-05 12:57:49 -07:00
Ward Fisher
a359cb6a53 Reverted some of the spelling corrections. Some misspellings were intentional 2015-10-16 14:36:17 -06:00
tbeu
e2820e4d8a Fix common typos 
Detected by https://github.com/vlajos/misspell_fixer
 2015-08-20 11:42:05 +02:00
dmh
859f105005 merge-squash 2015-08-15 16:26:35 -06:00
Russ Rew
0687dfe5a2 Cleanup clang warnings. 2015-08-02 17:22:50 -06:00
Ward Fisher
3a792b1fb2 Remove the [NCF-332] temp file on failure. 2015-05-29 10:23:24 -06:00
Ward Fisher
ea8f1d9027 Fleshed out [NCF-332] test to check all little-endian variable types supported, and also added some true-negative/expected failure tests. Next up is regression testing and then merging into master. 2015-05-29 09:49:20 -06:00
Ward Fisher
d5d1efbcdb Refactoring and expanding [NCF-332] test. 2015-05-29 09:22:38 -06:00
Ward Fisher
0ed84b406b Fleshed out a test that *should* start passing, once we've fixed issue [NCF-332] 2015-05-28 17:21:01 -06:00
Ward Fisher
64e0d2a44e Added a new test for h4 endianness. [NCF332] 2015-05-28 17:13:15 -06:00
Ward Fisher
4fecd37ba7 Refactored tst_h_endians to tst_h5_endians, so that we can differentiate between hdf5 and hdf4 endian tests. 2015-05-28 16:29:49 -06:00
Ward Fisher
c9d7c88f63 Added a stanza for 'NC_DOUBLE' into the recently-added endians test. 2015-05-18 10:55:17 -06:00
Ward Fisher
5eb90c3a66 Cleaned up an unnecessary test, added refactored nc4 test to autotools. 2015-05-15 15:31:38 -06:00
Ward Fisher
9d98aab40a Refactored test. 2015-05-15 15:29:29 -06:00
Ward Fisher
99ef1624bc Regarding [NCF-331], the issues appears to have been in nc4file.c:get_type_info2(). The call to H5Tget_order() was only happening for H5T_Float. According to the documentation, this works for all datatypes as of hdf5 1.8.6. This tentatively fixes the bug reported, but additional testing (and cleanup from debugging) is needed. 2015-05-15 14:24:27 -06:00
Ward Fisher
de29c4d0a8 Tweaked tests for additional debugging. 2015-05-15 13:11:46 -06:00
Ward Fisher
999f4e5720 Additional debugging, modified the LOGGING functions somewhat. Also modified ncdump to print 'native' endianness. This may be removed before merging back into trunk. 2015-05-14 17:22:07 -06:00
Ward Fisher
fa1d61b980 Additional debugging for [NCF-331] 2015-05-12 13:52:52 -06:00
Ward Fisher
6eff077ed5 Incorporated endian test for [NCF-331] into autotools. 2015-05-12 13:00:22 -06:00
Ward Fisher
c43f9dee63 Refined test for [NCF-331]. 2015-05-11 15:58:47 -06:00
Ward Fisher
659172816b Added a new test. 2015-05-11 15:01:31 -06:00
Ward Fisher
ee3daa3267 Added a test contributed by Jeff Whitaker. See https://github.com/Unidata/netcdf-c/issues/112 or [NCF-331] for more information. 2015-05-11 14:52:16 -06:00
Russ Rew
ab18a2e17c Fix bug NCF-187 (thanks to Alexander Barth). Add test for bug fix. 2015-04-02 12:30:51 -06:00
Russ Rew
6a6e8c08a6 added test case for ncf-187, haven't added fix yet 2015-04-01 15:09:27 -06:00
Quincey Koziol
aede522766 Mark dataset attributes dirty when one is renamed. 2015-02-25 09:25:40 -06:00
Ward Fisher
261e7511cc Modified group rename shell script to work in Msys/Windows Environment. 2015-02-02 14:46:51 -07:00
Ward Fisher
2d72b7ca7f More work on getting the shell scripts working properly with cmake under MSYS. 2015-02-02 14:46:50 -07:00
Russ Rew
db83a3be4c Jira issue NCF-314, "Provide replacement for using numeric values of -k 
option on nccopy and ncgen".
 2014-12-29 13:07:28 -07:00
Russ Rew
9a60dc612f Use short "-k" codes instead of deprecated version numbers for ncgen and nccopy tests 2014-12-28 22:42:05 -07:00
Ubuntu
a33d21cf34 Merge branch 'master' into NCF-177 2014-12-15 14:27:36 +00:00
Russ Rew
eaf8ef61e0 resolved conflict 2014-12-09 13:31:20 -07:00
Russ Rew
97b49d1421 Fix (harmless) confusion between varid and dimid names 2014-12-05 12:47:45 -07:00
Quincey Koziol
86d47170ee Update with tests from ticket. 2014-12-02 08:35:36 -06:00
Quincey Koziol
5749c5178a Remove useless assignment. 2014-11-07 08:26:46 -06:00
vagrant
534d24c689 Changed test order to resolve dependency which caused an issue on centos platforms. 2014-08-29 16:30:28 -06:00
Ward Fisher
b04d49166c Fence-posted hdf4-related shell script tests on Windows. 2014-08-29 11:27:55 -06:00
Ward Fisher
b25dbcd24a Added an explicit error message string to nc_strerror for NC_ECANTEXTEND. 2014-08-18 14:24:16 -06:00
Russ Rew
a71e1acb67 Use curl instead of wget to get hdf4 files when --enable-hdf4-tests specified 2014-07-20 17:14:17 -06:00
Ward Fisher
7f812b367e Manual merge of pull request https://github.com/Unidata/netcdf-c/pull/64 contributed by nschloe. Assorted CMake improvements. 2014-06-11 15:51:31 -06:00
dmh
4de1b58df2 [NCF-272] 
There was a problem with the
distcheck testing since the test input files
are in ${src_dir} and the test is in ${build_dir}.
So modify run_chunk_hdf4 to copy as necessary.
 2014-05-31 13:54:52 -06:00
dmh
ff60798bb1 Add CMAKE for hdf4 chunking 2014-05-30 22:16:19 -06:00
dmh
b560fe1233 [NCF-272] 
It turns out that HDF4 supports chunking
(and compression). However the existing
HDF4 code does not support it.
So add HDF4 support for chunking.
Also add a test case.
 2014-05-30 22:12:05 -06:00
Quincey Koziol
435d8a03ed Account for the HDF5 library not having the MPI-POSIX VFD configured in. 2014-05-07 08:45:15 -05:00
Ward Fisher
44fae42214 Cleaned up indentation, white space in multiple CMakeLists.txt files. 2014-04-21 11:15:33 -06:00
Ward Fisher
cf7763645c Corrected an issue with tst_v2 on Windows. 2014-04-11 14:32:16 -06:00
Ward Fisher
74209d373e Corrected an issue with disabling the V2 API support in cmake-based builds. 2014-04-03 10:45:22 -06:00
Ward Fisher
874c768afb Fixed issue when running parallel tests in a CMake build, as reported in issue 38 on github. 2014-03-13 10:59:21 -06:00
Quincey Koziol
fe9e0b056d Update HDF4 support for recent datatype changes. 2014-02-25 21:05:19 -06:00