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814 Commits

Author SHA1 Message Date
Ed Hartnett
59a25093d9 added setting of mpiexec command to CMake build 2018-08-16 07:33:04 -06:00
Ed Hartnett
afb7e5ab43 set mpiexec from configure 2018-08-16 07:23:41 -06:00
Ed Hartnett
b3842197e0 merged master 2018-08-16 05:49:41 -06:00
Ed Hartnett
d59446ccd5
Merge branch 'master' into ejh_func_cleanup3 2018-08-15 18:08:34 -06:00
Ed Hartnett
a0bea92919 fixed problem of not calling NC_ versions of vars and varm functions for extra error checking 2018-08-14 05:04:09 -06:00
Ed Hartnett
5c39fa115a return error for NULL start for varm functions 2018-08-14 04:35:38 -06:00
Ed Hartnett
a271ebb5f2 testing NULL starts 2018-08-14 04:17:34 -06:00
Ed Hartnett
97c2541a37 put_vars checking for NULL start for non-scalar vars and test 2018-08-13 13:05:32 -06:00
Ward Fisher
a996ed554e Swapped /bin/bash for /bin/sh to test on osx. 2018-08-12 23:01:08 -06:00
Ed Hartnett
ad25807bd1
Merge branch 'master' into ejh_global_att_read 2018-08-06 16:30:26 -06:00
Ward Fisher
5f89204bdb
Merge branch 'master' into ejh_func_cleanup3 2018-08-06 11:32:45 -06:00
Ed Hartnett
56a57a57f0 bring in changes from lazy vars branch 2018-08-06 10:57:19 -06:00
Dennis Heimbigner
4ec592648a Force chunking when testing filter 2018-08-04 18:57:02 -06:00
Ed Hartnett
b9afdee6cd merged master 2018-07-31 19:44:28 -06:00
Ed Hartnett
7ab6d7bdda
Merge branch 'master' into ejh_global_att_read 2018-07-31 19:32:36 -06:00
Dennis Heimbigner
b02703aa24 This PR primarily addresses Issue https://github.com/Unidata/netcdf-c/issues/725. 
After a long discussion, I implemented the rules at the end of that issue.
They are documented in nccopy.1.

Additionally, I added a new, per-variable, -c flag that allows
for the direct setting of the chunking parameters for a variable.
The form is
    -c var:c1,c2,...ck
where var is the name of the variable (possibly a fully qualified name)
and the ci are the chunksizes for that variable. It must be the case
that the rank of the variable is k. If the new form is used as well
as the old form, then the new form overrides the old form for the
specified variable. Note that multiple occurrences of the new form
-c flag may be specified.

Misc. Other fixes
1. Added -M <size> option to nccopy to specify the minimum
   allowable chunksize.
2. Removed the unused variables from bigmeta.c
   (Issue https://github.com/Unidata/netcdf-c/issues/1079)
3. Fixed failure of nc_test4/tst_filter.sh by using the new -M
   flag (#1) to allow filter test on a small chunk size.
 2018-07-26 20:16:02 -06:00
Ed Hartnett
5631fa512a merged master 2018-07-24 01:51:51 -06:00
Ed Hartnett
b56a8edcc9 code cleanup 2018-07-21 09:09:12 -06:00
Ed Hartnett
7aed50a902 performance test for fast global att reads 2018-07-21 07:29:12 -06:00
Ed Hartnett
8fdea13227 merged ejh_change_attsperf 2018-07-20 12:27:19 -06:00
Ed Hartnett
cafd2eaaf9 more changes to hande different scales 2018-07-20 12:19:20 -06:00
Ed Hartnett
4dbcd03f02 fixed num_vars bug 2018-07-20 09:43:53 -06:00
Ed Hartnett
0f21e3495e changed tst_attsperf 2018-07-20 06:26:42 -06:00
Ward Fisher
b1078c13f0 Merge branch 'ejh_hdf5internal' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into pr-aggregation.wif 2018-07-18 14:12:26 -06:00
Ward Fisher
35d1d73e53
Merge branch 'master' into patch-24 2018-07-17 10:58:58 -06:00
Ed Hartnett
396124c0ca merged ejh_hdf5internal 2018-07-17 07:56:09 -06:00
Ed Hartnett
d801425b78
Merge branch 'master' into ejh_hdf5internal 2018-07-14 13:01:14 -06:00
Ed Hartnett
3a08d85e13 clean up 2018-07-12 07:08:27 -06:00
Ed Hartnett
786c5a8f2e moved hdf5 specific header stuff to hdf5internal.h 2018-07-12 07:05:21 -06:00
Greg Sjaardema
c3f63b6ffe Enable metadata_perf test in CMake build 
Currently defaults to enabled, can change top-level
CMakeLists.txt file to change default to disabled
 2018-07-11 13:40:31 -04:00
Greg Sjaardema
1eb2504043
Fix missing ERR in tst_parallel5.c 
Missing the ERR macro for a few tests in tst_parallel5.c
 2018-07-10 08:12:04 -04:00
Ed Hartnett
0fed77be82 fixed warning 2018-07-06 06:32:09 -06:00
Dennis Heimbigner
30a4dea21c Disable tst_varsperf; should only be run manually 2018-06-26 15:14:31 -06:00
Ed Hartnett
97faffe072 fixed test issue 2018-06-21 06:51:45 -06:00
Ed Hartnett
d5baca7f97 fixed test issue 2018-06-21 06:36:12 -06:00
Ed Hartnett
eafe151f13 added test 2018-06-19 14:59:07 -06:00
Ed Hartnett
2dc6676bd8 now checking for classic model 2018-06-19 07:30:08 -06:00
Ed Hartnett
828fa3e0a5 changes to tst_varsperf to remove asserts 2018-06-12 07:30:49 -06:00
Ed Hartnett
fb570522bc merged in ejh_fix_user_type 2018-06-12 06:49:40 -06:00
Ed Hartnett
752030f59a merged ejh_test_exten_unlim_no_coord 2018-06-12 06:22:26 -06:00
Ed Hartnett
9e5924ebb4
Merge branch 'master' into ejh_more_testing 2018-06-11 15:58:36 -06:00
Ed Hartnett
12db5e22f3 added test of extending unlimited dim with no coord var 2018-06-11 06:17:52 -06:00
Ward Fisher
5fe7d0ffad
Merge branch 'master' into ejh_udf 2018-06-08 16:52:20 -06:00
Ward Fisher
df4942d280 Merge branch 'master' into vars.dmh 2018-06-08 15:50:28 -06:00
Ed Hartnett
c1106c5f18 szip may not be present 2018-06-08 04:46:33 -06:00
Ed Hartnett
a721f91d45 merged master 2018-06-08 04:44:44 -06:00
Ed Hartnett
367d7c2a57 merged master 2018-06-07 18:36:25 -06:00
Ed Hartnett
5112ef8c72 merged master 2018-06-07 07:27:47 -06:00
Ed Hartnett
7aa073eb5d magic numbers working with user-defined formats 2018-06-07 06:49:16 -06:00
Ed Hartnett
5521e062a4 more udf test 2018-06-06 13:17:32 -06:00
Ed Hartnett
d8f7ca3e6e adding udf test 2018-06-06 13:15:48 -06:00
Ed Hartnett
9a2782b56c got long working with master 2018-06-05 14:40:49 -06:00
Ed Hartnett
17da700a5c adding support for magic numbers 2018-06-05 12:22:38 -06:00
Ed Hartnett
3a8987967e improving testing of user-defined formats 2018-06-05 11:53:59 -06:00
Ed Hartnett
2e831e9bbe initialization of user-defined formats 2018-06-02 08:43:34 -06:00
Ed Hartnett
926ce56775 fixing NC4_show_metadata for windows 2018-06-01 08:10:16 -06:00
Ed Hartnett
d7badd18d9 messing with NC4_show_metadata 2018-06-01 07:09:44 -06:00
Ed Hartnett
011e85cea4 merge ejh_par_tests 2018-05-30 05:06:25 -06:00
Ed Hartnett
3949bd61bc merge ejh_par_leak 2018-05-30 05:03:42 -06:00
Ed Hartnett
5ac7df7ae1 merge ejh_more_tests 2018-05-30 05:01:19 -06:00
Ed Hartnett
fcc6091600 merged ejh_test_def_var_extra 2018-05-30 04:59:10 -06:00
Ed Hartnett
6992295ef7 getting windows build working 2018-05-30 04:31:15 -06:00
Dennis Heimbigner
ee509ff4f3 Re-Implement the nc_get/put_vars operations for netcdf-4 using the 
corresponding HDF5 operations.

re: github issue https://github.com/Unidata/netcdf-c/issues/908
also in reference to https://github.com/pydata/xarray/issues/2004

The netcdf-c library has implemented the nc_get_vars and nc_put_vars
operations as element at a time. This has resulted in very slow
operation.

This pr attempts to improve the situation for netcdf-4/hdf5 files
by using the slab operations provided by the hdf5 library. The new
implementation passes the get/put vars stride information down to
the hdf5 slab operations.

The result appears to improve performance significantly. Some simple
tests on large 2-D arrays shows speedups in excess of 150.

Misc. other changes:
1. fix bug in ncgen/semantics.c; using a list's allocated length
   instead of actual length.
2. Added a temporary hook in the netcdf library plus a performance
   test case (tst_varsperf.c) to estimate the speedup. After users
   have had some experience with this, I will remove it, probably
   after the 4.7 release.
 2018-05-22 16:50:52 -06:00
Ed Hartnett
7a18d361fb
Merge branch 'master' into ejh_udf 2018-05-22 07:19:10 -06:00
Dennis Heimbigner
02bd33f250 Merge branch 'dapparams.dmh' of https://github.com/Unidata/netcdf-c into dapparams.dmh 2018-05-19 16:11:24 -06:00
Dennis Heimbigner
5fc6be9472 Code duplicated; merge failure? 2018-05-18 20:28:51 -06:00
Ed Hartnett
bab5ef7549 fixed printf statement 2018-05-17 05:53:10 -06:00
Ed Hartnett
df60e5917a added test 2018-05-17 05:50:30 -06:00
Ed Hartnett
6c6c86ef96 added tests, cleaned up test 2018-05-17 05:45:51 -06:00
Ed Hartnett
33bf6147ce cleaned up comments 2018-05-16 03:29:08 -06:00
Ed Hartnett
40c552bd43 cleaned up nc4hdf5.c 2018-05-16 03:18:50 -06:00
Ed Hartnett
d8947c81ee cleaned up whitespace 2018-05-16 02:44:46 -06:00
Ed Hartnett
c0b4e96428 added parallel testing for string type 2018-05-16 02:27:07 -06:00
Ed Hartnett
37cae16b38 added parallel testing for string type 2018-05-16 02:26:13 -06:00
Ed Hartnett
3e79501c3e added parallel compound type test 2018-05-15 08:54:51 -06:00
Ed Hartnett
95e2d10347 fixed comment 2018-05-15 08:15:25 -06:00
Ed Hartnett
b8ad15b6ae tests for ncdump issue with irish rover 2018-05-15 08:09:52 -06:00
Ed Hartnett
942bc48181 test development 2018-05-14 14:25:56 -06:00
Ed Hartnett
984f112580 test development 2018-05-14 10:06:35 -06:00
Ed Hartnett
271abc6bcb added file 2018-05-14 08:49:13 -06:00
Ed Hartnett
fd23cb3cf2 cleanup makefile, develop test 2018-05-14 08:11:32 -06:00
Ed Hartnett
350946b1e0 user defined formats only if netcdf-4 is built 2018-05-13 16:03:04 -06:00
Ed Hartnett
2d0ef80cc4 added tests 2018-05-13 07:31:46 -06:00
Ed Hartnett
bc759bba58 added tests to confirm correct default chunksizes when fletcher32/shuffle are turned on 2018-05-12 09:48:13 -06:00
Ed Hartnett
03ea1056f4 now reject user-defined types for CLASSIC_MODEL netcdf-4 files 2018-05-12 08:26:48 -06:00
Ward Fisher
9f716a228f
Merge branch 'master' into inmemory.dmh 2018-05-04 16:15:22 -06:00
Dennis Heimbigner
9aa1e9a14e master merge 2018-05-03 21:02:12 -06:00
Ed Hartnett
6e25c75947
Merge branch 'master' into ejh_move_tests 2018-04-30 17:53:39 -06:00
luz.paz
74fbacdb82 Misc. source comment typos 
Some are user-facing. Found via `codespell` and through the downstream FreeCAD.
 2018-04-26 23:04:01 -04:00
Ed Hartnett
507717e803
Merge branch 'master' into ejh_move_tests 2018-04-26 18:47:48 -06:00
Dennis Heimbigner
ff212442f1 merge master and conflict resolve 2018-04-26 14:22:01 -06:00
Greg Sjaardema
09b0a76a01
Add missing ERR Macro 
The ERR macro was  missing from a couple tests.
 2018-04-25 09:54:31 -06:00
Ward Fisher
65f7dd0397
Merge branch 'master' into ejh_move_tests 2018-04-23 13:36:53 -06:00
Dennis Heimbigner
0a44d9ae3a Merge branch 'master' into inmemory.dmh 2018-04-23 11:30:14 -06:00
Ed Hartnett
1f9a78c6eb fixed distcheck problem 2018-04-23 03:29:37 -06:00
Ed Hartnett
b5e282996c moved tests 2018-04-23 03:19:11 -06:00
Dennis Heimbigner
d3b309722e re: gh issue https://github.com/Unidata/netcdf-c/issues/911 
I took Ed's advice and moved the plugin stuff to its own
top-level directory. This is an attempt to solve the problem of
copying files that we have experienced. In any case, it will
serve as a place to stick additional plugins.
 2018-04-21 20:10:47 -06:00
Ed Hartnett
f36ae96ee4
Merge branch 'master' into ejh_fill_test 2018-04-19 15:41:38 -06:00
Ward Fisher
9a1172fbb0 Replace quotes when including system includes, in support of https://github.com/Unidata/netcdf-c/issues/928 2018-04-18 10:51:03 -06:00
Ed Hartnett
48c92cbdc3
Merge branch 'master' into ejh_fill_test 2018-04-16 16:35:09 -06:00
Dennis Heimbigner
c66f1d53bb missing file 2018-04-14 12:01:52 -06:00
Ward Fisher
e2e2c2117f
Merge branch 'master' into index.dmh 2018-04-02 18:13:34 -06:00
Ed Hartnett
168340a8b6 added test for utf8 normalization for variable rename 2018-03-30 11:26:47 -06:00
Ed Hartnett
0e454a75c2 added fill mode test 2018-03-30 10:20:33 -06:00
Ed Hartnett
af79dfa14d new method of using valgrind 2018-03-28 13:54:05 -06:00
Dennis Heimbigner
1246dd189b merge master 2018-03-20 21:50:58 -06:00
Ward Fisher
36c4b7947d Merge branch 'master' into newhash1.dmh 2018-03-20 11:20:14 -06:00
Dennis Heimbigner
dc8c08f939 forgot to add files to repo 2018-03-17 19:09:49 -06:00
Dennis Heimbigner
cc136cad08 Add a configurable "test case" that will create 
and then open a file with a lot of metadata.
The test is configurable to determine the parameters
for the created metadata.
 2018-03-17 16:25:13 -06:00
Dennis Heimbigner
25f062528b This completes (for now) the refactoring of libsrc4. 
The file docs/indexing.dox tries to provide design
information for the refactoring.

The primary change is to replace all walking of linked
lists with the use of the NCindex data structure.
Ncindex is a combination of a hash table (for name-based
lookup) and a vector (for walking the elements in the index).
Additionally, global vectors are added to NC_HDF5_FILE_INFO_T
to support direct mapping of an e.g. dimid to the NC_DIM_INFO_T
object. These global vectors exist for dimensions, types, and groups
because they have globally unique id numbers.

WARNING:
1. since libsrc4 and libsrchdf4 share code, there are also
   changes in libsrchdf4.
2. Any outstanding pull requests that change libsrc4 or libhdf4
   are likely to cause conflicts with this code.
3. The original reason for doing this was for performance improvements,
   but as noted elsewhere, this may not be significant because
   the meta-data read performance apparently is being dominated
   by the hdf5 library because we do bulk meta-data reading rather
   than lazy reading.
 2018-03-16 11:46:18 -06:00
Ward Fisher
1e0cf1136c
Merge branch 'master' into ncpyfilter.dmh 2018-03-08 15:48:40 -07:00
Ed Hartnett
4e646e03f6 fixed cmake build file 2018-03-05 05:03:46 -07:00
Ed Hartnett
17f7a76356 moved HDF4 tests 2018-03-05 03:45:18 -07:00
Ward Fisher
c359a0e96a
Merge branch 'master' into newhash1.dmh 2018-03-04 22:40:51 -07:00
Dennis Heimbigner
7b324657d4
Merge branch 'master' into ncpyfilter.dmh 2018-03-02 19:49:43 -07:00
Dennis Heimbigner
dd4e71c150 1. Solve issue raised on netcdfgroup mailing list: 
https://www.unidata.ucar.edu/mailing_lists/archives/netcdfgroup/2018/msg00020.html
See docs/filters.md for a detailed description of the solution.
Basically we add nccopy flags "-F none" and "-F <varname>:none"
to suppress output compression as desired.

2. Add tests to nc_test4/tst_filter.sh to test out the solution.
 2018-03-02 16:55:58 -07:00
Ward Fisher
faad52041f Merge branch 'ejh_valgrind_removal_unidata_again' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into pr-aggregation2.wif 2018-03-02 14:22:42 -07:00
Ed Hartnett
49ebcc0e57 fixed problem of test file 2018-02-27 11:10:04 -07:00
Ed Hartnett
64e5742d88 added tst_bug324 to cmake build 2018-02-27 08:53:58 -07:00
Ed Hartnett
45329862a8 removed valgrind stuff 2018-02-27 08:36:12 -07:00
Dennis Heimbigner
8cb1fc4cfe This is the second step in refactoring the libsrc4 code. 
The first was branch newhash0.dmh.

As with newhash0.dmh, these changes should be transparent.
 2018-02-24 20:36:24 -07:00
Ward Fisher
a8faac9292
Merge branch 'master' into classic_ext_ncid 2018-02-22 17:15:34 -07:00
Ward Fisher
8e169175e4
Merge branch 'master' into newhash0.dmh 2018-02-22 14:55:31 -07:00
Ward Fisher
f9f27c5ab7
Merge branch 'master' into newhash0.dmh 2018-02-21 14:19:43 -07:00
Ed Hartnett
9de58cad99
Merge branch 'master' into ejh_extra_tests 2018-02-19 18:52:50 -07:00
Ed Hartnett
ca5f314fc0 minor test cleanup 2018-02-16 09:00:15 -07:00
Ed Hartnett
13fcc67d90
Merge branch 'master' into ejh_hdf4_dispatch_unidata2 2018-02-15 13:25:11 -07:00
Ed Hartnett
b0a8d4ee30 fixed merge issue 2018-02-14 07:58:50 -07:00
Ed Hartnett
41eb0f26c1
Merge branch 'master' into ejh_extra_tests 2018-02-13 15:48:35 -07:00
Ed Hartnett
e5cbf259ba fixed string memory leak 2018-02-13 14:17:15 -07:00
Ed Hartnett
cb4722a0cf fix for memory problem in tst_vars2.c 2018-02-13 13:49:29 -07:00
Ward Fisher
878b107d36 Corrected overflow error in support of https://github.com/Unidata/netcdf-c/issues/861 2018-02-13 12:18:06 -07:00
Ed Hartnett
dd41680f90 added rename test 2018-02-12 10:13:31 -07:00
Ed Hartnett
dbbd5094cb added rename test to CMakeLists.txt 2018-02-12 10:12:49 -07:00
Ed Hartnett
32e2798dde added rename test 2018-02-12 10:08:59 -07:00
Ed Hartnett
70d815b6c8 pulled in some attribute testing that got missed in recent merges 2018-02-12 08:33:20 -07:00
Dennis Heimbigner
727b613459 This is the initial step in moving to the new higher performance 
(I hope) metadata mechanism. This mostly just adds new pieces of
code (e.g. nclistmap) and does some minor fixes.

It should be transparent to everything else.
The next set of changes will be the big step.
 2018-02-08 19:53:40 -07:00
Ed Hartnett
bd77f8865b fixed tst_filter.sh for parallel builds 2018-02-08 07:20:40 -07:00
Ed Hartnett
2358d4a910 moved HDF4 to its own dispatch layer 2018-02-08 06:20:58 -07:00
Ward Fisher
5107655682 Accomodate Visual Studio 2018-02-06 13:32:30 -06:00
Ward Fisher
a640c034f2 Merge branch 'ejh_atts_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-05 11:47:48 -07:00
Ward Fisher
e0577cb251 Merge branch 'ejh_fill_value_string_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-05 11:47:34 -07:00
Ward Fisher
b268f268bd Merge branch 'ejh_dims_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-05 11:43:41 -07:00
Ed Hartnett
0d96ead703
Merge branch 'master' into ejh_dims_unidata 2018-02-05 06:34:04 -07:00
Ward Fisher
c12fca453e Merge branch 'ejh_rename2_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-02 17:57:32 -07:00
Ward Fisher
9b4b2308c6 Merge branch 'ejh_warnings' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-02 17:56:04 -07:00
Ed Hartnett
383a19161a fixed warnings 2018-02-01 07:36:34 -07:00
Ed Hartnett
2afe401f17 another rename fix 2018-02-01 05:10:57 -07:00
Ward Fisher
03446423f7 Merge branch 'patch-12' of https://github.com/gsjaardema/netcdf-c into gsjaardema-batch 2018-01-31 16:24:38 -07:00
Ward Fisher
9a0d1d6501 Merge branch 'patch-14' of https://github.com/gsjaardema/netcdf-c into gsjaardema-batch 2018-01-31 16:21:41 -07:00
Ward Fisher
8c33de7a9a Merge branch 'patch-15' of https://github.com/gsjaardema/netcdf-c into gsjaardema-batch 2018-01-31 16:17:59 -07:00
Greg Sjaardema
30ec6821c3
Missing ERR after api test call 
Missed this one on previous PR.  Another missing ERR after API test if.
 2018-01-31 10:08:48 -07:00
Greg Sjaardema
60a6f34102
Fix missing ERR after if test 
A couple API invocations were missing the ERR macro following the if test.
 2018-01-31 09:17:28 -07:00
Greg Sjaardema
2f44fa49c6
Eliminate unused variables 
Remove variables no longer used after recent refactorings.
 2018-01-31 09:05:35 -07:00
Greg Sjaardema
63b700c40c
Remove V2 code if V2 API not being built 
Remove test code that uses the version 2 API if the version 2 API code is not being activated in the build.

This was originally proposed in #656 with a better fix in #755 which was removed.
 2018-01-31 09:00:17 -07:00
Ed Hartnett
7c936a7bb6 brought in changes from ejh_att 2018-01-31 08:44:33 -07:00
Ed Hartnett
dff3472a2e comment change to trigger travis testing 2018-01-31 07:22:08 -07:00
Ed Hartnett
94c23712b7 extra tests, plus fill value fixes for string type 2018-01-30 14:39:47 -07:00
Ed Hartnett
333b802861 fix dim bad paramter issues 2018-01-30 09:35:56 -07:00
Dennis Heimbigner
d388f0e7f3 - Rename target logical name bzip2 in nc_test4/hdf5plugins in order to avoid 
cmake error CMP0002: duplicate name
- Assuming that all compilers treat floating point constants as double,
  remove d suffix from DBLVAL in nc_test4 and examples/C
 2018-01-25 19:33:23 -07:00
Wei-keng Liao
cb7aafa805 fix issue 791: validate ncid for classic files 2018-01-25 00:03:19 -06:00
Ward Fisher
7f1f02c96d Additional tweaks for make dist. 2018-01-24 18:05:30 -07:00
Ward Fisher
d0339c8902 Merge branch 'pr-catchup' into v4.6.0-release-branch 2018-01-24 15:51:24 -06:00
Ward Fisher
ca814c17f0 Added fenceposts for filter testing. 2018-01-23 18:18:58 -06:00
Dennis Heimbigner
3e47f5f300 Rebuilt the filter parameter handling code to use a common 
parser everywhere.
 2018-01-23 16:00:11 -07:00
Ward Fisher
aac9fad1c4 Merge branch 'ejh_develop_3' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into pr-catchup 2018-01-23 15:32:19 -06:00
Wei-keng Liao
d0c2015ced fix tst_converts.c when enable-erange-fill is set 2018-01-20 15:44:04 -06:00
Ed Hartnett
c329298dc5 merged 760 2018-01-20 07:31:42 -07:00
Ed Hartnett
ef65bdf9af merged 786 2018-01-20 06:06:25 -07:00
Ed Hartnett
da928c1b83 merged 780 2018-01-20 06:05:34 -07:00
Ed Hartnett
9fcc6b62fd merged 769 2018-01-20 06:05:17 -07:00
Dennis Heimbigner
22ebecab23 Use an explicit can_apply function for filters 2018-01-19 18:45:56 -07:00
Dennis Heimbigner
991c4c6d16 Add some extra nccopy filter debug output 2018-01-19 12:06:02 -07:00
Dennis Heimbigner
e723d7dfed Merge branch 'plugins.dmh' of https://github.com/Unidata/netcdf-c into plugins.dmh 2018-01-19 10:58:46 -07:00
Ed Hartnett
986673ff49 attempted to fix parallel build issue 2018-01-19 06:53:04 -07:00
Ed Hartnett
2f7625d19a more test development 2018-01-19 05:19:15 -07:00
Ed Hartnett
196a0b574a more test development 2018-01-19 05:11:07 -07:00
Ed Hartnett
4be1fd82e6 further test development 2018-01-19 04:16:59 -07:00
Ed Hartnett
bc1f103c3d cleaned up h5 checks in nc4grp.c 2018-01-19 03:37:49 -07:00
Ed Hartnett
3f83998b26
Merge branch 'master' into ejh_rename2 2018-01-18 16:05:04 -07:00
Ward Fisher
0f5fc7222b
Merge branch 'master' into plugins.dmh 2018-01-18 15:46:50 -07:00
Ed Hartnett
126d34da1d more tests, error handling 2018-01-18 07:36:52 -07:00
Ed Hartnett
38c7cddf8f further test development, added documentation for uncommitted user-defined types, fixed check of return value 2018-01-18 06:47:50 -07:00
Ed Hartnett
466fac5381 more test development 2018-01-18 05:57:33 -07:00
Ed Hartnett
001483505f rehabilitated tst_types.c 2018-01-18 05:34:52 -07:00
Dennis Heimbigner
090fc98ac9 Merge branch 'plugins.dmh' of https://github.com/Unidata/netcdf-c into plugins.dmh 2018-01-17 19:48:10 -07:00
Dennis Heimbigner
8d8dff9a2a Add some temporary debugging output 2018-01-17 19:47:54 -07:00
Ward Fisher
62abc6af09 Updated CMakeLists.txt to correct an issue seen on OSX when using cmake and running 'make test' directly from nc_test4 2018-01-17 14:00:52 -07:00
Ed Hartnett
9949a11155 removed some unneeded HDF4 checks, added some needed parameter checks 2018-01-17 09:09:58 -07:00
Ward Fisher
ac5aabc3fc Tweaked for parallel autoconf tests with filters. 2018-01-16 17:49:21 -07:00
Ward Fisher
f7b4c61c69 Updated test for OSX 2018-01-16 17:07:52 -07:00
Ward Fisher
606b782adf Corrected a build issue on OSX 2018-01-16 16:39:58 -07:00
Ed Hartnett
e6f82ae397 further test development 2018-01-16 14:57:40 -07:00
Ed Hartnett
3af0e84314 test development 2018-01-16 14:38:09 -07:00
Ed Hartnett
3a0385da3e test development 2018-01-16 14:36:47 -07:00
Dennis Heimbigner
70068d7d32 With Ward's help, I figured out how to 
obviate the need for build type under
cmake+Visual-studio. This simplified
findplugin.in.
 2018-01-16 13:28:30 -07:00
Dennis Heimbigner
99fccab359 1. Keep up to date by merging master 
2. Fixed plugin building (nc_test4/hdf5plugins)
   to be done properly by cmake and automake.
4. Duplicated part of the nc_test4 filter test code
   in examples/C

An incomplete and untested set of hooks exist
for OS-X in nc_test4/findplugins.in. They need testing.
 2018-01-16 11:00:09 -07:00
Ed Hartnett
3626c776ae test development 2018-01-16 09:43:41 -07:00
Ed Hartnett
0862d6d7ce removed MPE calls 2018-01-16 09:23:36 -07:00
Ed Hartnett
d77ac20af4 more test cleanup 2018-01-16 08:14:43 -07:00
Ed Hartnett
f603ab2163 more test cleanup 2018-01-16 08:09:14 -07:00
Ed Hartnett
ba518b80a7 more test cleanup 2018-01-16 08:09:03 -07:00
Ed Hartnett
f716ac8549 more test cleanup 2018-01-16 08:06:23 -07:00
Ed Hartnett
1bd6387e5e clean up of test 2018-01-16 08:04:00 -07:00
Ed Hartnett
de150aec4e clean up of test 2018-01-16 08:03:15 -07:00
Ed Hartnett
3fa3d3f9f9 ported rename fix changes from branch ejh_fill_values for easy merging 2018-01-05 06:01:22 -07:00
Levi Naden
978e83d28a Fix another test typo 2018-01-02 11:43:15 -05:00
Levi Naden
6a24ca4366 Fix typo 2018-01-02 11:39:09 -05:00
Levi Naden
f6fc9c183b Allow multiple vars with different chunks on the same unlimited dim 
Fix #299
The conditions to make this error are the following:
* Two variables with different chunk sizes
* Both variables write on the same unlimited dimension
* The first variable has already written data when the second variable is created
 2018-01-02 11:37:01 -05:00
Ward Fisher
77cca75977
Merge branch 'master' into ejh_more_tests 2017-12-07 20:24:43 -07:00
Ward Fisher
0ef6f3415a Making tst_hdf4_read_var.sh dependent on tst_interops2. 2017-12-06 15:07:54 -07:00
Ed Hartnett
ea49cc1d3f merged ejh_notbuilt_errors 2017-12-04 13:23:31 -07:00
Ed Hartnett
2066232dc0 more tests, more interanl documentation 2017-12-03 06:05:37 -07:00
Ed Hartnett
bf6dab14e0 fixed error value from nc4_find_g_var_nc() when ncid is bad 2017-12-03 04:06:56 -07:00
Ed Hartnett
9e4c564656 more tests 2017-12-02 18:00:22 -07:00
Ed Hartnett
8055c1cede more tests 2017-12-02 17:43:46 -07:00
Ed Hartnett
996e39373f more test 2017-12-02 15:52:49 -07:00
Ed Hartnett
1cf8177f45 more test 2017-12-02 15:43:40 -07:00
Ed Hartnett
ea63ff526f more tests 2017-12-02 08:05:17 -07:00
Ed Hartnett
bfeb8d4e0b more testing 2017-12-02 07:38:01 -07:00
Ed Hartnett
7cd344f7b0 removed redundant check in NC4_def_var() 2017-12-02 07:23:23 -07:00
Ed Hartnett
6c3aa79684 more testing of nc_set_var_chunk_cache_ints 2017-12-02 07:15:19 -07:00
Ed Hartnett
d840bc7160 starting adding testing for _int() functions for caching 2017-12-02 06:52:13 -07:00
Ed Hartnett
300236cd8c more tests 2017-12-01 15:08:22 -07:00
Ed Hartnett
58f422e2a8 more tests 2017-12-01 14:33:32 -07:00
Ed Hartnett
acbd3e259e more tests 2017-12-01 13:58:13 -07:00
Ed Hartnett
ded01e0aba more tests 2017-12-01 13:15:58 -07:00
Ed Hartnett
a8e9c196e2 more tests, fixed documentation warnings 2017-12-01 13:02:59 -07:00
Ed Hartnett
42c482d33c more tests 2017-12-01 11:20:09 -07:00
Ed Hartnett
ce1df112a5 more testing for nc4var.c functions 2017-12-01 09:38:32 -07:00
Ed Hartnett
2023ed6b7c fixed problems with bad inputs to nc_def_Var 2017-12-01 09:08:12 -07:00
Ed Hartnett
34c9248e6f
Merge branch 'master' into ejh_notbuilt_errors 2017-11-28 17:16:56 +00:00
Ed Hartnett
3c5404ccf7
Merge branch 'master' into ejh_ncfunc_testing 2017-11-28 00:04:38 +00:00
Ed Hartnett
ce97137318 removed properties from tst_interops3 which is no longer a test in CMake build 2017-11-26 09:07:34 -07:00
Ed Hartnett
bebe7e1e9d merged master 2017-11-26 07:06:02 -07:00
Nehal J Wani
1b91bd89d4
Fix build on pre-C99 compilers 
- Make sure that the variables are declared at the top of the block.
 - Add fix to enable inline for various compilers
 2017-11-26 01:47:54 +05:30
Ed Hartnett
8011fab382 now run tst_large2, also cleaned up some more warnings 2017-11-24 10:50:07 -07:00
Ed Hartnett
273b1d5bf9 merged ejh_check_test 2017-11-24 10:12:54 -07:00
Ed Hartnett
fa7f17a8c8 got cmake working with HDF4 format test 2017-11-24 06:05:55 -07:00
Ed Hartnett
b4bccb60b3 fixing test order problem 2017-11-23 07:18:12 -07:00
Ed Hartnett
60d1d6271d fixing order in CMake 2017-11-23 04:52:19 -07:00
Ed Hartnett
843db9798f finally got my distcheck act together by moving hdf4 file test to nc_test4 2017-11-23 04:41:03 -07:00
Ward Fisher
394ee6a1e0 Corrected typo, more enhancements in CMakeLists.txt 2017-11-22 13:34:56 -07:00
Ed Hartnett
d64550d3f0
Merge branch 'master' into ejh_notbuilt_errors 2017-11-22 17:14:24 +00:00
Ed Hartnett
3a48f59de3 removed legacy test that was no longer being run 2017-11-21 19:46:05 -07:00
Ed Hartnett
c8a2d53d34 fixes HDF4 build with cmake 2017-11-20 08:25:47 -07:00
Ed Hartnett
eecade6af9
Merge branch 'master' into ejh_notbuilt_errors 2017-11-18 21:24:11 +00:00
Ed Hartnett
d7c1dd82c3 fixed hdf4 test that should not run if utilities not built 2017-11-18 07:36:24 -07:00
Ed Hartnett
3b0c301d76 moved tst_bug324 in Cmake build from ncdump to nc_test4 2017-11-16 11:57:39 -07:00
Ed Hartnett
4f43b80320 moved test from ncdump to nc_test4 2017-11-16 11:30:35 -07:00