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207 Commits

Author SHA1 Message Date
Dennis Heimbigner
483cbf94fe Added code to support NIL 
values for strings in ncgen.
Needs test cases.
 2013-07-10 20:00:48 +00:00
Dennis Heimbigner
628aed80d9 1. synch changes with oc2.0 
2. Fix a bug in ncgen to
   catch a special case of a malformed
   datalist.
 2013-06-26 18:55:30 +00:00
Dennis Heimbigner
f14c884918 1. Moved all the PNETCDF code 
(primarily from libsrc4)
   into its own dispatch library
   called libsrc5.

2. Fixed part of Jira NCF-253
   by removing the need for the
   pnetcdf_ndims field.
   For some reason, the original
   code tried to cache the variable
   ranks rather than computing them
   as needed. Fixed by doing
   an ...inq_varndims call as needed.

3. found some places where NC_MAX_DIMS
   was being stack allocated and changed
   to heap allocation.
   Still some cases in nc_test4.
 2013-05-11 21:01:18 +00:00
Dennis Heimbigner
5be772b6c0 1. Moved all the PNETCDF code 
(primarily from libsrc4)
   into its own dispatch library
   called libsrc5.

2. Fixed part of Jira NCF-253
   by removing the need for the
   pnetcdf_ndims field.
   For some reason, the original
   code tried to cache the variable
   ranks rather than computing them
   as needed. Fixed by doing
   an ...inq_varndims call as needed.

3. found some places where NC_MAX_DIMS
   was being stack allocated and changed
   to heap allocation.
   Still some cases in nc_test4.
 2013-05-11 20:04:33 +00:00
Dennis Heimbigner
de34ed2d5b merge from netcdf/trunk prior to merge back to trunk 2013-05-11 19:37:38 +00:00
Dennis Heimbigner
79215c77ae Allow dapodom.[ch] to be used in tests 2013-05-11 19:34:54 +00:00
Dennis Heimbigner
4070bcf946 Fix (again) jira NCF-248. 
So, it turns out that just freeing
the nc4_info is not enough;
The root group must also be reclaimed.
So, it appears the best approach
is to invoke an abort on the
failed file.
 2013-04-24 22:11:44 +00:00
Dennis Heimbigner
4b7817e69e Return EACCES instead of NC_EMETADATA when failing to create an HDF5 file 2013-03-26 16:31:56 +00:00
Dennis Heimbigner
ab17dded89 Caron says to use thredds-test 
as the default test server.
 2013-03-25 18:01:32 +00:00
Dennis Heimbigner
4e41843740 1) fix some minor bugs when pnetcdf is enabled 2)Comment out some apparently unused procedures 2013-03-25 17:12:50 +00:00
Dennis Heimbigner
8d993d58d8 undo a conversion to static 2013-03-25 16:29:19 +00:00
Dennis Heimbigner
1abb2ecb56 Fix jira NCF-243 
Problem was that the NC_create
code was not checking for the NC_CLASSIC_MODEL
mode flag in deciding what dispatch table to use.
This meant that it was then defaulting to use
the default format, and if that was changed
to e.g. NC_FORMAT_NETCDF4, then it would try
to create a netcdf-4 format file, even is
NC_CLASSIC_MODEL mode flag was set.
 2013-03-15 20:03:59 +00:00
Dennis Heimbigner
c18c90b012 removed some unused local variables 2013-03-12 20:45:58 +00:00
Dennis Heimbigner
80cf3a2c75 fix typo in previous checkin 2013-03-08 18:27:45 +00:00
Dennis Heimbigner
d70cf6d10c Primary change is to add ability 
to do prefetch on either a lazy
or eager basis. Lazy means that
the prefetch does not occur
until and unless the client actually
makes a get_var request.

Also repaired a problem where
doing prefetch wrt a url that
has a constraint will prefetch
a whole variable if its constrained
size is small enough, even if the
underlying variable is too large
to warrant prefetch.
 2013-03-03 04:06:43 +00:00
Dennis Heimbigner
c50b8c29e2 Fix Jira NCF-233. 
Rename nciter.[ch] to nc_iter.[ch] to avoid
potential build issues.
 2013-02-28 17:51:09 +00:00
Dennis Heimbigner
d46e68e906 Added additional Jira items to RELEASE_NOTES; did a partial sort on NCF number 2013-02-26 21:56:13 +00:00
Dennis Heimbigner
6cf31dcf2d jira: NCF-232: bad conversion of grids 2013-02-26 04:31:06 +00:00
Dennis Heimbigner
7f58fc9400 fix bug in % encoding of dap names 2013-01-30 21:33:31 +00:00
Dennis Heimbigner
0d8c0b9276 more pnetcdf fixes 2013-01-18 02:25:12 +00:00
Dennis Heimbigner
c11e78314e periodic sync of oc2 dir with the official oc2.0 repository 2012-12-18 21:08:23 +00:00
Dennis Heimbigner
adbe2ba5f1 extend r2822 to work when logging is enabled 2012-12-18 19:44:39 +00:00
Dennis Heimbigner
635a03f2f7 It turns out that when I converted the code 
to keep the NC structure pure and independent
of any file format, I neglected to check with
--enable-hdf4. These changes appear to fix that
problem.
 2012-12-13 18:22:11 +00:00
Dennis Heimbigner
0803ba20ba fix Jira NCF-208; but note that this causes test.06 to fail because thredds mishandles grids 2012-11-21 23:57:42 +00:00
Dennis Heimbigner
a53682fc66 fix Jira NCF-207: double call to del_from_NCLIST 2012-11-21 17:52:49 +00:00
Dennis Heimbigner
29d3fe7d51 fix bug in reading a file url (needs to signal binary if possible) 2012-08-21 23:34:25 +00:00
Dennis Heimbigner
256a2d94bd fix jira NCF-191 reported by Manke 2012-08-15 21:13:44 +00:00
Dennis Heimbigner
65350dc361 fix Jira bug NCF-191 reported by Manke 2012-08-15 17:55:25 +00:00
Dennis Heimbigner
be5a7bbe71 update oc2 2012-08-12 17:40:08 +00:00
Dennis Heimbigner
23e66f5adb update list utilities 2012-08-09 19:42:02 +00:00
Dennis Heimbigner
ab1423e742 resolve jira NCF-188 2012-08-09 17:32:11 +00:00
Dennis Heimbigner
faa1c81671 fix a cosmetic issue with config.h 2012-08-01 17:18:58 +00:00
Dennis Heimbigner
42999f4c7c move from oc1.0 to oc2.0; create new dir oc2 2012-07-31 20:34:13 +00:00
Dennis Heimbigner
d67ad1adf1 nctest/run_valgrind.sh was not in EXTRA_DIST for some reason 2012-07-24 23:09:55 +00:00
Dennis Heimbigner
8c01f7437f fixed valgrind error in tst_h_strings.c 2012-07-18 15:50:29 +00:00
Dennis Heimbigner
007798183b oops; completely disable udunits and libcf again 2012-07-17 22:29:09 +00:00
Dennis Heimbigner
95ee14d882 Fix things so --with-udunits and --with-libcf could be enabled if desired 2012-07-17 22:23:37 +00:00
Dennis Heimbigner
5ecd5854a9 fix server ping in test_varm3 2012-07-16 20:34:31 +00:00
Dennis Heimbigner
60b3f3b6f3 change file permissions for memio and mmapio 2012-06-28 17:12:02 +00:00
Dennis Heimbigner
d61af2ab31 fix typo 2012-06-25 17:03:18 +00:00
Dennis Heimbigner
7ddd90c577 Added some more documentation about NC_MMAP 2012-06-25 16:48:39 +00:00
Dennis Heimbigner
a6b932826b add NC_MMAP flag and tests 2012-06-23 19:25:49 +00:00
Dennis Heimbigner
d144438455 fix temp file creation problems re: wfisher 2012-06-06 21:33:53 +00:00
Dennis Heimbigner
89bb83e41d disable doxygen by default 2012-05-18 20:31:50 +00:00
Dennis Heimbigner
5b2aee44a7 windows support fixes plus add --disable-diskless 2012-05-15 17:48:27 +00:00
Dennis Heimbigner
79c751b806 catch some distclean files 2012-05-13 18:42:10 +00:00
Dennis Heimbigner
e42d7d7f61 fix bug in opaque parsing 2012-05-05 22:31:24 +00:00
Dennis Heimbigner
c39c006039 fix fill bug (re: WJF-305473) 2012-05-04 17:32:14 +00:00
Dennis Heimbigner
77de04bb29 fix memory overflow bug (HT to Larry Knox) 2012-05-03 17:15:41 +00:00
Dennis Heimbigner
00e50f5a44 1. changed from using port 8080 to 8081 for motherlode 
2. Fixed Ward's IGNORE problem with oc
3. Mmap support now works.
4. Fix an uninitialized variable pointed out by Russ in dnclog.c
 2012-04-22 20:34:21 +00:00
Dennis Heimbigner
e29a6fb164 added list of configure flags to man4/install.doc 2012-04-13 02:41:00 +00:00
Dennis Heimbigner
353b7ebf53 fix bug in memio.c realloc code 2012-04-12 02:06:28 +00:00
Dennis Heimbigner
48ca394d2e diskless: make read and write loop to read/write whole file when persisting 2012-04-09 22:03:02 +00:00
Dennis Heimbigner
5536bccee1 allow NC_DISKLESS with nc_open() to operate as a in-memory cache 2012-04-08 22:47:38 +00:00
Dennis Heimbigner
f5bd3bf525 cleanup and remove unused code 2012-04-01 20:15:06 +00:00
Dennis Heimbigner
a169a8383c fixed type bug in tst_createfiles.c: int[]->size_t[] 2012-03-31 19:11:33 +00:00
Dennis Heimbigner
c417a58747 add some debugging help to fix snapshot error 2012-03-30 21:51:31 +00:00
Dennis Heimbigner
7a9802dc7c forgot to check the case when HAVE_MEMMOVE is false 2012-03-28 17:46:25 +00:00
Dennis Heimbigner
28bd09236b move single use macro to using program 2012-03-28 16:19:16 +00:00
Dennis Heimbigner
5570117513 fix NC_DISKLESS documentation in nc_create 2012-03-27 03:20:05 +00:00
Dennis Heimbigner
93f722f594 accidental variable declaration in netcdf.h 2012-03-26 17:03:09 +00:00
Dennis Heimbigner
7e27052f87 - Implemented diskless files for both netcdf classic and extended. 
The in-memory files can be made persistent if nc_create is called with
  NC_DISKLESS|NC_WRITE flags set. Initial test case also included.
- Modified ncio mechanism to support
  multiple ncio packages; this is so we
  can have posixio and memio operating
  at the same time.
- cleanup up a bunch of lint issues (unused variables, etc).
 2012-03-26 01:34:32 +00:00
Dennis Heimbigner
25c3167841 ckp 2012-03-26 01:30:22 +00:00
Dennis Heimbigner
88f7950d6f fix a bunch of uninitialized variables 2012-03-16 22:29:09 +00:00
Dennis Heimbigner
99eef24bc2 - Fix NCF-158 to modify ncgen flag defaults. 
- Fix NCF-157 to modify DAP code to support
  partial variable retrieval.
- Fix of NCF-154 to solve problem of ncgen
  improperly processing data lists for variables
  of size greater than 2**18 bytes.
- Fix ncgen processing of char variables that have
  multiple unlimited dimensions.
- Partly fix Jira issue: NCF-145 (vlen issues).
- Benchmark program nc_test4/tst_ar4_*) requires arguments
  and should only be invoked inside a shell
  script; fixed so that they terminate cleanly
  if invoked with no arguments.
- Fix the Doxygen processing so it will work
  with make distcheck.
- Begin switchover to using an alternative to ncio.
- Begin support for in-memory (diskless) files.
 2012-03-14 23:26:48 +00:00
Dennis Heimbigner
787d32fffd changed form of some static data to work with cxx4 2012-03-08 22:21:12 +00:00
Dennis Heimbigner
2349c62d18 close Jira NCF-154 2012-03-07 23:38:51 +00:00
Dennis Heimbigner
7cee1bb0ac added info about minimum libcurl version 2012-03-02 20:27:44 +00:00
Dennis Heimbigner
629f712c77 fix bug in ncgen -lc handling of single character vars 2012-02-29 18:54:11 +00:00
Dennis Heimbigner
5f6c865543 fixed minor malloc problem 2012-02-15 19:15:03 +00:00
Dennis Heimbigner
ea1af11655 Resolve Lynton's vlen problems (partially) re: jira NCF-145 2012-02-14 00:25:32 +00:00
Dennis Heimbigner
6898930374 fix use of tail in run_back_comp_tests.sh 2012-02-05 19:34:03 +00:00
Dennis Heimbigner
1e1907e393 fix a bug in libdap2 handling of strings 2012-01-30 04:32:12 +00:00
Dennis Heimbigner
aebd11348a 1)Integrate the oc with improved performance 2012-01-29 18:56:29 +00:00
Dennis Heimbigner
ed6d25d562 premerge 2012-01-29 18:50:02 +00:00
Dennis Heimbigner
702dfea21c make note about ISO-8859-1 in ncgen.l 2012-01-27 03:17:03 +00:00
Dennis Heimbigner
907e07bf99 2012-01-10 17:40:27 +00:00
Dennis Heimbigner
599f35d2e6 fix appel problems with data lists 2012-01-09 18:39:37 +00:00
Dennis Heimbigner
75563918a8 fix documentation tarball construction to be consistent with tm2.pl 2012-01-02 17:18:44 +00:00
Dennis Heimbigner
a4817c7888 make knmi tests run properly 2011-12-15 20:24:54 +00:00
Dennis Heimbigner
95772ba2a8 fix build issues identied by Rew 2011-12-13 23:16:16 +00:00
Dennis Heimbigner
9894f6f1ce fix typo in daputil.c 2011-12-13 19:45:02 +00:00
Dennis Heimbigner
42d93127cc fix oc/daptab.c not being in dist 2011-12-13 19:40:22 +00:00
Dennis Heimbigner
a8732c1320 Add test for character fillvalue bug 2011-12-13 04:16:52 +00:00
Dennis Heimbigner
b7f74c9cb4 Moved Jira release notes into RELEASE_NOTES 2011-12-12 23:49:27 +00:00
Dennis Heimbigner
8b3b307b10 modify dap legal names 2011-12-05 20:53:43 +00:00
Dennis Heimbigner
efd9808b0a completely rewritten constraint system 2011-11-14 04:20:19 +00:00
Dennis Heimbigner
d10a2605ce moved librpc/ from major branch to trunk 2011-10-23 20:17:56 +00:00
Dennis Heimbigner
42a2d2aa17 fix count error when converting dap attributes 2011-10-04 17:50:42 +00:00
Dennis Heimbigner
1578ddac0c 2011-09-20 20:39:04 +00:00
Dennis Heimbigner
4ac55c541c 2011-09-20 18:30:13 +00:00
Dennis Heimbigner
732fbff7ce 2011-09-20 17:30:02 +00:00
Dennis Heimbigner
12d4f46668 2011-09-18 20:57:51 +00:00
Dennis Heimbigner
d7790e7e7e 2011-09-16 18:36:08 +00:00
Dennis Heimbigner
16dee702b7 fix NCF-120 2011-09-15 16:57:16 +00:00
Dennis Heimbigner
1ec800e07b fix a missing files problem 2011-09-02 18:23:45 +00:00
Dennis Heimbigner
7eccec950f Merge librpc 2011-09-01 22:32:28 +00:00
Dennis Heimbigner
eae569c6ee fixed cache handling problem: Jira NCF-106 2011-08-06 02:49:23 +00:00
Dennis Heimbigner
0a89437215 fix fix of NCF-42: _Format handling 2011-08-03 18:26:18 +00:00
Dennis Heimbigner
53e8d22d24 Fixed NCF-104 2011-07-27 20:48:58 +00:00
Dennis Heimbigner
f10d6256b1 prepare for new escape rules 2011-07-17 19:17:04 +00:00
Dennis Heimbigner
a7fdbb176d Fixed nulldup issues: Jira # NCF-94 2011-07-14 22:43:43 +00:00
Dennis Heimbigner
4f30d3694c cleanup misc. issues 2011-07-14 22:24:02 +00:00
Dennis Heimbigner
475e868003 1st working version of libcdmr 2011-06-10 18:47:26 +00:00
Dennis Heimbigner
3df9918cbc fixed escape handling for names 2011-05-27 18:57:35 +00:00
Dennis Heimbigner
03f79aa8f5 fixed esupport:RVK-949505 and DML-490284 2011-05-24 21:48:44 +00:00
Dennis Heimbigner
fec4cdb230 Fixed the following Jira minor bugs: 
NCF-42: _Format attribute sometimes being ignored
NCF-43: Fixed unsigned long long parsing.
NCF-47: Make opendap code properly handle illegal names like "x.y" by
        supressing them
NCF-49: check for uint type
NCF-50: properly handle username:pwd embedded in urls.
 2011-05-12 17:51:32 +00:00