Commit Graph

30 Commits

Author SHA1 Message Date
edwardhartnett
94f1a89a40 final removal 2019-08-15 07:05:10 -06:00
edwardhartnett
170c5b0901 removed NC from open in dispatch table 2019-08-01 14:30:20 -06:00
edwardhartnett
5fa67ebe16 removed need of NC pointer in create for pnetcdf dispatch layer 2019-08-01 11:31:03 -06:00
edwardhartnett
f80b751585 have pnetcdf look up NC pointer for create 2019-08-01 11:27:53 -06:00
Dennis Heimbigner
4c92fc3405 Remove netcdf-4 conditional on the dispatch table.
Partially address: https://github.com/Unidata/netcdf-c/issues/1056

Currently, some of the entries in the dispatch table
are conditional'd on USE_NETCDF4.

As a step in upgrading the dispatch table for use
with user-defined tables, we remove that conditional.
This means that all dispatch tables must implement the
netcdf-4 specific functions even if only to make them
return NC_ENOTNC4. To simplify this, a set of default
functions are defined in libdispatch/dnotnc4.c to provide this
behavior. The file libdispatch/dnotnc3.c is also relevant to
this.

The primary fix is to modify the various dispatch tables to
remove the conditional and use the functions in
libdispatch/dnotnc4.c as appropriate. In practice, all of the
existing tables are prepared to handle this, so the only
real change is to remove the conditionals.

Misc. Unrelated fixes
1. Fix some annoying warnings in ncvalidator.

Notes:
1. This has not been tested with either pnetcdf or hdf4 enabled.
   When those are enabled, it is possible that there are still
   some conditionals that need to be fixed.
2019-07-20 13:59:40 -06:00
Dennis Heimbigner
6934aa2e8b Thread safety: step 1: cleanup
re: https://github.com/Unidata/netcdf-c/issues/1373 (partial)

* Mark some global constants be const to indicate to make them easier to track.
* Hide direct access to the ncrc_globalstate behind a function call.
* Convert dispatch tables to constants (except the user defined ones)
  This has some consequences in terms of function arguments needing to be marked
  as const also.
* Remove some no longer needed global fields
* Aggregate all the globals in nclog.c
* Uniformly replace nc_sizevector{0,1} with NC_coord_{zero,one}
* Uniformly replace nc_ptrdffvector1 with NC_stride_one
* Remove some obsolete code
2019-03-30 14:06:20 -06:00
Ward Fisher
763750fab5 More copyright stanza updates. 2018-12-06 14:56:42 -07:00
Wei-keng Liao
65ca7d09b9 add NC_WRITE to LEGAL_CREATE_FLAGS for PnetCDF dispatcher 2018-10-04 11:53:39 -05:00
Wei-keng Liao
0ed70756cc Ignore flags NC_MPIIO and NC_MPIPOSIX. 2018-09-22 20:22:34 -05:00
Wei-keng Liao
48da78e133 Use PnetCDF instead of parallel-netcdf to avoid confusion with
parallel netcdf4. Also, update PnetCDF web page.
2018-09-17 17:18:48 -05:00
Wei-keng Liao
329a44f911 fix varm API when stride == NULL and imap != NULL
fix bug when NC_check_id() failed, nc should not be used.
2018-09-17 17:18:48 -05:00
Ward Fisher
59e98ef087
Merge branch 'master' into default_format 2018-08-03 10:59:41 -06:00
Ward Fisher
3b10efa26f
Merge branch 'master' into var_par_access 2018-07-31 11:30:43 -06:00
Wei-keng Liao
025c7d1bb2 introduce error code NC_EPNETCDF for errors at PnetCDF level 2018-07-29 15:33:08 -05:00
Wei-keng Liao
0ee68a3263 This commit fixes the logical problem of using the default file formats.
The fix includes the following changes.
1. Checking and using the default file format at file create time is now
   done only when the create mode (argument cmode) does not include any
   format related flags, i.e. NC_64BIT_OFFSET, NC_64BIT_DATA,
   NC_CLASSIC_MODEL, and NC_NETCDF4.
2. Adjustment of cmode based on the default format is now done in
   NC_create() only. The idea is to adjust cmode before entering the
   dispatcher's file create subroutine.
3. Any adjustment of cmode is removed from all I/O dispatchers, i.e.
   NC4_create(), NC3_create(), and NCP_create().
4. Checking for illegal cmode has been done in check_create_mode() called
   in NC_create(). This commit removes the redundant checking from
   NCP_create().
5. Remove PnetCDF tests in nc_test/tst_names.c, so it can focus on testing
   all classic formats and netCDF4 formats.

Two new test programs are added. They can be used to test netCDF with and
without this commit.
1. nc_test/tst_default_format.c
2. nc_test/tst_default_format_pnetcdf.c (use when PnetCDF is enabled).
2018-07-28 11:18:28 -05:00
Wei-keng Liao
739dfa2aa2 PnetCDF does not support per-variable collective/independent data mode change; modify nc_var_par_access to ignore varid 2018-07-15 16:19:21 -05:00
Dennis Heimbigner
0a44d9ae3a Merge branch 'master' into inmemory.dmh 2018-04-23 11:30:14 -06:00
Ed Hartnett
96154d9303 added merged HDF4 changes 2018-04-04 14:11:44 -06:00
Dennis Heimbigner
ccc70d640b re: esupport MQO-415619
and https://github.com/Unidata/netcdf-c/issues/708

Expand the NC_INMEMORY capabilities to support writing and accessing
the final modified memory.

Three new functions have been added:
nc_open_memio, nc_create_mem, and nc_close_memio.

The following new capabilities were added.
1. nc_open_memio() allows the NC_WRITE mode flag
   so a chunk of memory can be passed in and be modified
2. nc_create_mem() allows the NC_INMEMORY flag to be set
   to cause the created file to be kept in memory.
3. nc_close_mem() allows the final in-memory contents to be
   retrieved at the time the file is closed.
4. A special flag, NC_MEMIO_LOCK, is provided to ensure that
   the provided memory will not be freed or reallocated.

Note the following.
1. If nc_open_memio() is called with NC_WRITE, and NC_MEMIO_LOCK is not set,
   then the netcdf-c library will take control of the incoming memory.
   This means that the original memory block should not be freed
   but the block returned by nc_close_mem() must be freed.
2. If nc_open_memio() is called with NC_WRITE, and NC_MEMIO_LOCK is set,
   then modifications to the original memory may fail if the space available
   is insufficient.

Documentation is provided in the file docs/inmemory.md.
A test case is provided: nc_test/tst_inmemory.c driven by
nc_test/run_inmemory.sh

WARNING: changes were made to the dispatch table for
the close entry. From int (*close)(int) to int (*close)(int,void*).
2018-02-25 21:45:31 -07:00
Wei-keng Liao
0f4a85b9f2 a clean commit for #383 2017-12-20 20:53:30 -06:00
Ed Hartnett
46d3bca8f4 removed non-working BUILD_DLL target 2017-11-30 05:40:17 -07:00
Dennis Heimbigner
970dde6fd1
Update ncpdispatch.c
Need to check the parameter stuff.
See libsrc/nc3dispatch.c#NC3_inq_var_all
for example
2017-11-14 11:07:23 -07:00
Ed Hartnett
4d029daf39 fixed pnetcdf issues 2017-11-14 09:52:14 -07:00
Dennis Heimbigner
ed44fd7306 Add szip support via libaec 2017-08-27 13:35:20 -06:00
Dennis Heimbigner
715a6fe5eb The files libdispatch/dwinpath.c and include/ncwinpath.h
were added to provide a path name converter from e.g. cygwin
paths to e.g. windows paths. This is necessary because
the shell scripts may produce cygwin paths, but the code
may have been compiled with Visual Studio. Similar issues
arise with Mingw.

At appropriate places, and if using Visual Studio or Mingw,
I added calls to the path conversion code.
Apparently I forgot to find all the places where this
conversion was needed. So this pr does the following:
1. Push the calls to the converter to the various libXXX
   directories and out of libdispatch/dfile.c.
2. Add conversion calls to other parts of the code like oc2.

I also turns out that conversion code in dapcvt.c
had a bug when handling DAP Byte type under visual studio.

Notes:
1. there may still be places I missed that need to do path conversion.
2. need to make sure that calls to e.g. H5open also use converted path.
2017-07-13 10:40:07 -06:00
Wei-keng Liao
075bc075e4 ncmpi__enddef has been available since PnetCDF 1.5.0 2016-10-18 14:38:34 -05:00
Wei-keng Liao
fbbed1f9ff move ncid check to the first and add varid check before name check 2016-10-13 02:12:26 -05:00
Ward Fisher
f2b8e69ea8 Corrected logic use of USE_PARALLEL for no-hdf5 but still using pnetcdf.
Added fix for github issue http://github.com/Unidata/netcdf-c/issues/143 as suggested by Wei-keng Liao.
2015-11-09 18:21:11 +00:00
dmh
2bfe9bba32 cleanup and squash changes vav master 2015-08-16 21:44:18 -06:00
dmh
fab66699d1 Moved libsrc5 to libsrcp
because pnetcdf is used for
more than CDF-5 files.
2015-08-14 20:39:56 -06:00