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Author SHA1 Message Date
Ward Fisher
debb149a4f
Merge pull request #1141 from NetCDF-World-Domination-Council/ejh_cache_sep 
Separate the HDF5 cache code
 2018-10-04 12:05:39 -06:00
Ward Fisher
de3b0902fc
Merge branch 'master' into ejh_cache_sep 2018-10-03 14:14:06 -06:00
Ward Fisher
0381e1a4e6
Merge pull request #1155 from Unidata/fillmismatch.dmh 
Modify DAP2 and DAP4 to optionally allow Fillvalue/Variable mismatch
 2018-10-03 14:08:52 -06:00
Ward Fisher
9b02df9472 Updated travis.yml to enable filter testing as part of the travis CI tests. 2018-10-02 17:41:52 -06:00
Dennis Heimbigner
26da2fae01 Remove debug output 2018-10-02 11:43:11 -06:00
Dennis Heimbigner
dd654a272e Remove debug from tst_filter.sh 2018-10-01 15:54:25 -06:00
Dennis Heimbigner
8072d1f6bb Modify DAP2 and DAP4 to optionally allow Fillvalue/Variable mismatch 
re: issue https://github.com/Unidata/netcdf-c/issues/1151

Modify DAP2 and DAP4 code to handle case when _FillValue type is not
same as the parent variable type.

Specifically:
1. Define a parameter [fillmismatch] to allow this mismatch;
   default is to disallow.
2. If allowed, forcibly change the type of the _FillValue to match
   the parent variable.
3. If allowed Convert the values to match new type
4. Generate a log message
5. if not allowed, then fail

Implementing this required some changes to ncdap_test/dapcvt.c
Also added test cases.

Minor Unrelated Changes:
1. There were a number of warnings about e.g.
   assigning a const char* to a char*. Fix these
2. In nccopy.1, replace .NP with .IP "n"
   (re PR https://github.com/Unidata/netcdf-c/pull/1144)
3. fix minor error in ncdump/ocprint
 2018-10-01 15:51:43 -06:00
Ed Hartnett
cc62140f1d
Merge branch 'master' into ejh_cache_sep 2018-09-18 16:59:49 -06:00
Ward Fisher
18a05d0ed6
Merge pull request #1129 from NetCDF-World-Domination-Council/ejh_hdf5_sep_next_2 
Fix benchmark programs
 2018-09-18 12:20:59 -06:00
Ward Fisher
5259b4b1e8
Merge branch 'master' into ejh_hdf5_sep_next_2 2018-09-17 14:53:55 -06:00
Ward Fisher
58d382ce45
Merge pull request #1142 from Unidata/issue972.dmh 
Fix szip filter handling code and corresponding tests
 2018-09-17 14:53:37 -06:00
Dennis Heimbigner
108dc0f01d Fix szip filter handling code and correspondingtests 
re: https://github.com/Unidata/netcdf-c/issues/972

The current szip plugin code in the HDF5 library has some
unexpected behaviors that require some changes to how
nc_inq_var_szip is implemented and to the corresponding tests:
nc_test4/{test_szip,tst_vars3}.

Specifically, the following can happen:

1. The number of parameters provided by the user will be two,
   but the number of parameters returned by nc_inq_var_filter
   will be four because the HDF5 code (H5Zszip) will add two
   extra parameters for internal use. It turns out that the two
   parameters provided when calling nc_def_var_filter correspond
   to the first two parameters of the four parameters returned
   by nc_inq_var_filter.

2. The nc_inq_var_szip values corresponding to the ones provided
   by the caller may be different than those provided by
   nc_def_var_filter.  The value of the options_mask argument is
   known to add additional flag bits, and the pixels_per_block
   parameter may be modified.
 2018-09-15 15:21:51 -06:00
Ward Fisher
26b02ae362 Corrected a few things for old experimental bootstrap fortran option. Still not working tho. 2018-09-14 16:08:11 -06:00
Ward Fisher
a1dd3d2a2a Bumped experimental fortran autoinstall script to 4.4.4 2018-09-14 15:56:28 -06:00
Ward Fisher
e3cc0185cc Merge branch 'master' into housekeeping 2018-09-14 15:55:29 -06:00
Ed Hartnett
d9ef143d1e separated cache code from hdf5file.c 2018-09-14 13:33:22 -06:00
Ed Hartnett
b501748f58 fixed merge error 2018-09-14 11:56:10 -06:00
Ed Hartnett
a009dab557 fixed inadvertant move of function 2018-09-14 11:39:57 -06:00
Ed Hartnett
8367992725 undid changes to dap4_test/findtestserver4.c 2018-09-14 11:36:44 -06:00
Ed Hartnett
e2839c120f
Merge branch 'master' into ejh_hdf5_sep_next_2 2018-09-14 11:33:59 -06:00
Ward Fisher
cf1f737116
Merge pull request #1128 from NetCDF-World-Domination-Council/ejh_hdf5_sep_next 
Clean up unneeded object lookups...
 2018-09-14 11:12:34 -06:00
Ed Hartnett
eabb690949 fixing merge issue 2018-09-12 09:36:36 -06:00
Ed Hartnett
abf247de92 made dumpopenobjects static in attempt to get appvayor build working 2018-09-12 07:53:31 -06:00
Ed Hartnett
90d5783eea removed commented-out code 2018-09-12 06:08:02 -06:00
Ed Hartnett
9de849d492 restored dap4_test/findtestserver4.c to what it is on master 2018-09-12 06:05:09 -06:00
Ed Hartnett
bb53ad80a0 merged master 2018-09-12 06:01:37 -06:00
Ed Hartnett
72a2214bef
Merge branch 'master' into ejh_hdf5_sep_next 2018-09-11 15:42:47 -06:00
Ward Fisher
756030d79f
Merge pull request #1139 from Unidata/issue1138.dmh 
Remove the set_fmode
 2018-09-11 14:44:41 -06:00
Dennis Heimbigner
57e2e9cbf3
Remove the set_fmode 
resolve issue: https://github.com/Unidata/netcdf-c/issues/1138
 2018-09-10 12:38:18 -06:00
Ward Fisher
2e6889c1f1 modified version for upcoming maintenance release. 2018-09-10 09:16:23 -06:00
Ed Hartnett
12b74a2622
Merge branch 'master' into ejh_hdf5_sep_next 2018-09-07 18:03:34 -06:00
Ward Fisher
7514d7feaa
Merge pull request #1126 from Unidata/dapcurlopt.dmh 
Add the ability to set some additional curlopt values
 2018-09-07 16:56:49 -06:00
Ward Fisher
b884e17596 Merge branch 'master' into dapcurlopt.dmh 2018-09-07 15:37:46 -06:00
Ed Hartnett
08a2dce904 merged master 2018-09-07 12:40:44 -06:00
Ed Hartnett
8390d572ad
Merge branch 'master' into ejh_hdf5_sep_next 2018-09-06 17:30:37 -06:00
Ward Fisher
3f2557e868
Merge pull request #1124 from Unidata/provenance.dmh 
Improve provenance information
 2018-09-06 17:19:39 -06:00
Ward Fisher
6efa25e7e4 Updated and removed a check for _NCProperties during file comparison, as this test fails if the environment is different from the environment the reference file was built on. 2018-09-06 15:53:25 -06:00
Ward Fisher
784d777bff Merge branch 'master' into provenance.dmh 2018-09-06 15:13:09 -06:00
Ed Hartnett
86e002d794 merged master 2018-09-06 14:01:59 -06:00
Ed Hartnett
4213f10ed6 moved function 2018-09-06 13:57:39 -06:00
Ed Hartnett
e4b7c97b75 removed commented out code 2018-09-06 12:34:16 -06:00
Ed Hartnett
20cdb78590 restored findtestserver4.c 2018-09-06 12:26:01 -06:00
Ed Hartnett
80dc5bc0f7 merged master 2018-09-06 12:24:29 -06:00
Ed Hartnett
6c86ad8229 moved functions back 2018-09-06 12:19:17 -06:00
Ward Fisher
17f8eb11dd
Merge pull request #1119 from NetCDF-World-Domination-Council/ejh_loop_cleanup_2 
Fix checking for HDF5 max dims, no longer re-create atts if not needed, confirm behavior for HDF5 cyclical files, allow user to set mpiexec
 2018-09-06 11:47:36 -06:00
Ed Hartnett
efe8e3e8e6
Merge branch 'master' into ejh_loop_cleanup_2 2018-09-06 07:49:18 -06:00
Ward Fisher
746cece75d For some reason, the check for H5free() was never added to CMakeLists.txt. This becomes an issue with newer compilers, as observed in Ubuntu 18.04 and HDF5 1.10.2. The issue isn't seen in HDF 1.8.20. 2018-09-05 14:42:51 -06:00
Ward Fisher
fbe0a18b1c
Merge branch 'master' into ejh_loop_cleanup_2 2018-09-05 11:22:55 -06:00
Ward Fisher
57fea18aeb
Merge pull request #1135 from Unidata/combined-pr.wif 
Combined Pull Requests
 2018-09-05 11:21:43 -06:00
Ward Fisher
d0bb5ddde8 Merge remote-tracking branch 'origin/inmemory10.dmh' into combined-pr.wif 2018-09-04 13:39:34 -06:00