Commit Graph

247 Commits

Author SHA1 Message Date
Ward Fisher
ab7883897b Coverity: 1198195 2014-07-31 16:39:12 -06:00
Ward Fisher
dcf8ad365e Coverity: 711838 2014-07-31 16:32:50 -06:00
Ward Fisher
506440920f Coverity: 711834, 711833, 711832 2014-07-31 16:20:50 -06:00
Ward Fisher
f42202029a Cleaning up Doxygen warnings, reorganization of top-level documentation. 2014-07-14 16:56:42 -06:00
Ward Fisher
840d80f490 More doxygen tweaks. 2014-07-09 16:45:13 -06:00
Ward Fisher
7f812b367e Manual merge of pull request https://github.com/Unidata/netcdf-c/pull/64 contributed by nschloe. Assorted CMake improvements. 2014-06-11 15:51:31 -06:00
Ward Fisher
16649f8184 Started adopting syntax used by attributes in organizing dimensions documentation. 2014-05-16 13:44:12 -06:00
Ward Fisher
d0c958cd27 Merge branch 'sub_doc'
Working on reformatting the netcdf documents. Not complete yet, but off to a good start.
2014-04-23 11:04:57 -06:00
Dennis Heimbigner
8ed76e9ded Merge branch 'master' of https://github.com/Unidata/netcdf-c 2014-04-22 14:00:26 -06:00
Dennis Heimbigner
70b58a0ad5 ckp 2014-04-22 13:59:47 -06:00
Russ Rew
b4a191578c Documented limit on number of groups per file (32767). 2014-04-22 13:36:29 -06:00
Ward Fisher
2fd1195b82 Merge branch 'master' into sub_doc
Conflicts:
	man4/CMakeLists.txt
2014-04-21 14:19:55 -06:00
Ward Fisher
44fae42214 Cleaned up indentation, white space in multiple CMakeLists.txt files. 2014-04-21 11:15:33 -06:00
Ward Fisher
01598ae610 Fixed clang-reported issue: memory leak. 2014-04-19 17:55:01 -06:00
dmh
fb00c88763 fix bugs introduced by previous coverity fixes 2014-04-07 14:01:40 -06:00
dmh
389d2ea394 fix some coverity complaints 2014-04-07 13:00:47 -06:00
Dennis Heimbigner
464d5fc8bb 1. Add then remove some debugging info
for testing jna
2. add some personal scripts (*jna)
   to support creating jna dlls.
2014-04-03 15:46:12 -06:00
Ward Fisher
2a2d880002 Merge branch 'sub_doc' of https://github.com/Unidata/netcdf-c into sub_doc
Conflicts:
	man4/CMakeLists.txt
2014-03-31 16:27:37 -06:00
dmh
af566dd300 In preparation for adding dap4 support, I have cleaned up
the libdap2 code to make it dap2 protocol + netcdf classic
only.
2014-03-24 14:02:52 -06:00
Ward Fisher
5e3d265743 Removed vestigal function related to currently-inactive multiple-open functionality. 2014-03-19 16:14:22 -06:00
Ward Fisher
dcb30d2a15 Merge branch 'sub_doc' of https://github.com/Unidata/netcdf-c into sub_doc 2014-03-17 13:45:44 -06:00
dmh
b524e151ef Remove last vestiges of thredds-test 2014-03-14 14:07:35 -06:00
Ward Fisher
43e3c28d64 Merge branch 'sub_doc' of https://github.com/Unidata/netcdf-c into sub_doc 2014-03-11 13:14:22 -06:00
Ward Fisher
1e9f243f85 Fixed netcdf-c issue #30 (on github) related to cmake-generated nc-config script.
Initial split of Guide from rest of documentation.  Using 'tagfiles' to cross-reference from one documentation set to the other works, but then it drags all of the 'external' related pages into the index of the other.

Modified visability of the external groups and pages.

Adding proper section names to 'Example' sections, to avoid Doxygen warnings.

Initial split of Guide from rest of documentation.  Using 'tagfiles' to cross-reference from one documentation set to the other works, but then it drags all of the 'external' related pages into the index of the other.

Modified visability of the external groups and pages.

Adding proper section names to 'Example' sections, to avoid Doxygen warnings.

Reorganizing documentation into two separate doxygen projects.

Moved .texi documents into an old directory.

Pulled the tutorial document into a separate document, similar to the guide document.

Turned on treeview
2014-03-11 13:07:04 -06:00
dmh
c7086dd04b Add support to detect authorization errors to DAP 2014-03-11 11:58:22 -06:00
dmh
19d377e87a conflict resolution 2014-03-10 12:13:16 -06:00
dmh
9d5c8ba308 1. Previous ci of conversion fixes in libdispatch
was incomplete; complete the fix.
2. There is an inconsistency in the netcdfh interface
   about whether rank (# dimensions) is an int or
   size_t. I inadvertently assumed the latter and that
   breaks some API calls; so revert back.
2014-03-10 12:09:36 -06:00
Ward Fisher
513cb29ea4 The replacement of 'int' with 'size_t' caused a number of errors across multiple platforms in our CI system. The culprit is not obvious, so I am reverting the commit until we can take a closer look at the underlying issue.
Revert "1. Attempted to reduce the number of conversion errors"

This reverts commit 1b941d342d.
2014-03-10 10:04:37 -06:00
dmh
1b941d342d 1. Attempted to reduce the number of conversion errors
when -Wconversion is set. Fixed libdispatch, but
   rest of netcdf remains to be done.
2014-03-09 15:51:45 -06:00
dmh
a189b98b0b 1. Any test that references nctestserver/NC_findtestserver
should be under ENABLE_DAP_REMOTE_TESTS.
   Fixed to make sure that this is so.
   Also attempted to fix ncdap_test/CMakeLists.txt,
   but probably got it wrong.
   HT to Nico Schlomer.
2. Attempted to reduce the number of conversion errors
   when -Wconversion is set. Fixed oc2, but
   rest of netcdf remains to be done.
   HT to Nico Schlomer.
3. When doing #2, I discovered an error in ncgen.y
   that has remained hidden. This required some other
   test case fixes.
2014-03-08 20:41:30 -07:00
dmh
deeca5fb83 disable refcounting until semantics are decided 2014-03-07 14:56:52 -07:00
dmh
e3545bf88d 1. Allow files to be opened by name multiple
times, but returning the same ncid.
2. Separate out the dap auth tests
   and make them disabled by default.
3. turn of ncdap_test/test_varm3 until
   we can find a copy of coads_climatology.nc
2014-03-07 12:04:38 -07:00
Ward Fisher
e68710d465 Added a new cmake-based option, ENABLE_DOXYGEN_TODO_LIST. When used, the generated documentation will include a 'todo' page. This is generally for internal consumption only, so that pages and sections that need review or editing can be flagged. 2014-02-27 14:19:28 -07:00
Ward Fisher
75a71ffcf0 Reorganized doxygen documents, renamed .doc files as .dox.
Bumped revision to 4.3.1.2.  There may not be a 4.3.1.2 release, but I didn't want to leave it as 4.3.1.1.
Removed CMake-specific doxygen/documentation template, made changes required so that
CMake and autotools-based builds can use the same template (Doxyfile.in).
2014-02-19 16:32:26 -07:00
Quincey Koziol
b98a475f37 Minor tweaks to comments and LOG messages. 2014-02-17 13:34:05 -06:00
Quincey Koziol
fd981824c1 Correct handling of variablen-length sequences for attributes, plus uncomment a
bunch of tests that stress this area of the library.

Also clean up some compiler warnings in the dispatch code.
2014-02-14 08:07:14 -06:00
Quincey Koziol
b2dfacbcfa Big clean up to type handling in libsrc4, which makes fill-values work
correctly for variables with string datatype, plus a few other minor changes.
2014-02-11 17:12:08 -06:00
dmh
582410a407 [NCF-273]/HZY-708311
Add a new function called nc_inq_format_extended that
returns more detailed format information (vis-a-vis
nc_inq_format) about an open dataset.

Note that the netcdf API will present the file as if it had
the format specified by nc_inq_format.  The true file
format, however, may not even be a netcdf file; it might be
DAP, HDF4, or PNETCDF, for example. This function returns
that true file type.  It also returns the effective mode for
the file.

signature: nc_inq_format_extended(int ncid, int* formatp, int* modep)
where
* ncid is the NetCDF ID from a previous call to nc_open() or
  nc_create().
* formatp is a pointer to a location for returned true format.
* modep is a pointer to a location for returned mode flags.

Refer to the actual list in the file netcdf.h to see the
currently defined set.

Also added test cases (tst_formatx*).
2013-12-22 12:53:20 -07:00
dmh
a35d3c04d8 dfile.c:NC_open has a couple of
uninitialized local variables.
Fix was to initialize them.
2013-10-15 14:33:30 -06:00
Ward Fisher
f43bf8f1da Addressed a handful of issues identified by
Coverity static analysis.
2013-08-05 20:36:33 +00:00
Ward Fisher
909f569de0 Changed argument list of nc_rename_grp to match definition of nc_rename_grp,
changed invocation of nc_rename_grp in renamegroup.c.
2013-07-22 17:27:43 +00:00
Ward Fisher
0401fafb3b Changed argument list of nc_rename_grp to match definition of nc_rename_grp,
changed invocation of nc_rename_grp in renamegroup.c.
2013-07-22 17:04:54 +00:00
Dennis Heimbigner
b85d3568ec Added the necessary code to support
group renaming. The primary API
is 'nc_rename_grp(int grpid, const char* name)'.
No test cases provided yet.
This also required adding a rename_grp entry
to the dispatch tables.
2013-07-19 21:48:37 +00:00
Russ Rew
6cd8fca60d Quincey's fixes for NCF-250, netCDF-4 parallel independent access with
unlimited dimension hanging.  Extending the size of an unlimited
dimension in HDF5 must be a collective operation, so now an error is
returned if trying to extend in independent access mode.

Quincey's bug fixes for parallel build portability, particularly
OpenMPI on MacOS-X.
2013-07-08 21:31:13 +00:00
Russ Rew
58a63708cc Fix contributed by Nath Gopalaswamy to large file problem reading
netCDF classic or 64-bit offset files that have a UINT32_MAX flag for
large last record size of a variable that has values larger than 1
byte.  This problem had previously been fixed for *writing* such data,
but was only tested with an ncbyte variable.  Fixed test to
demonstrate problem and the fix.

More updates to chunking documentation, cosmetic fixes for some
"--option=" documentation that doxygen turns into mdash.
2013-06-25 17:04:10 +00:00
Ward Fisher
33d3d06971 Added initial 'make dist', 'make distcheck' support to
CMake-based builds.
2013-06-03 16:42:04 +00:00
Ward Fisher
1df00fa579 Re-added fix for very small files. 2013-05-22 18:56:52 +00:00
Dennis Heimbigner
228e8439d2 1. The code to parse a constraint
was losing the initial double quote
for a quoted string.
2. The code in ncuri.c was not properly
   handling occurrences of e.g. %xx
2013-05-16 21:37:58 +00:00
Dennis Heimbigner
253a26cb82 change format of url parameters in fragment part 2013-05-13 19:12:37 +00:00
Dennis Heimbigner
5be772b6c0 1. Moved all the PNETCDF code
(primarily from libsrc4)
   into its own dispatch library
   called libsrc5.

2. Fixed part of Jira NCF-253
   by removing the need for the
   pnetcdf_ndims field.
   For some reason, the original
   code tried to cache the variable
   ranks rather than computing them
   as needed. Fixed by doing
   an ...inq_varndims call as needed.

3. found some places where NC_MAX_DIMS
   was being stack allocated and changed
   to heap allocation.
   Still some cases in nc_test4.
2013-05-11 20:04:33 +00:00