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d6a3944199
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757 Commits

Author SHA1 Message Date
Ward Fisher
d6a3944199
Merge pull request #1409 from Unidata/nccopydefault.dmh 
Nccopy was overriding default chunking when it should not.
 2019-05-29 15:26:09 -06:00
Dennis Heimbigner
06498ff16a various fixes 2019-05-23 16:35:03 -06:00
Ed Hartnett
73a433240c fixed warnings in tst_large2.c 2019-05-21 15:24:56 -06:00
Ed Hartnett
d858313d2e fixed warnings in tst_udf.c 2019-05-21 15:23:23 -06:00
Ed Hartnett
9fd7c06f16 fixed warnings in tst_rename2 2019-05-21 15:16:35 -06:00
Ed Hartnett
f35eea13d7 fixed warnings in tst_rename3 2019-05-21 15:15:25 -06:00
Ed Hartnett
fd29e2e608 uncommented test 2019-05-12 08:51:02 -06:00
Ward Fisher
103e5a3ff5
Merge pull request #1385 from Unidata/mmapfix.dmh 
Fix cmake wrt mmap
 2019-05-02 11:09:12 -06:00
Ward Fisher
44fce0904e
Merge pull request #1387 from Unidata/fixffilter.dmh 
Minor config.h changes to support filters in Fortran
 2019-05-01 14:44:53 -06:00
Ward Fisher
5410967b00 Merge branch 'master' into addfilter.dmh 2019-04-30 14:51:25 -06:00
Dennis Heimbigner
62feacee00 missing cmake file 2019-04-29 20:55:28 -06:00
Dennis Heimbigner
c9d16d82d6 Fix cmake X mmap 
supercede PR: https://github.com/Unidata/netcdf-c/pull/1384

Since we have an mmap user, undeprecate it and make sure
it works. Other changes:

* fix test cases to work with make -j
* fix exposed ncgen error.
 2019-04-19 20:32:26 -06:00
Ed Hartnett
d4ab03ea23 merged upstream/master 2019-03-26 11:29:01 -06:00
Ward Fisher
85b94a4244
Merge pull request #1364 from NetCDF-World-Domination-Council/ejh_non_contoversial 
non controversial parts of last PR
 2019-03-26 11:14:33 -06:00
Dennis Heimbigner
8d0bced60d Allow in-line definition of filters 
Priority: Low

re: issue https://github.com/Unidata/netcdf-c/issues/1329

HDF5 has the ability to programmatically define new filters,
as opposed to using HDF5_PLUGIN_PATH env variable.
This PR adds support for that feature.
Not clear how useful this is, though.
See docs/filters.md for details.
 2019-03-21 11:33:27 -06:00
Ward Fisher
a25236eac4
Merge pull request #1348 from Unidata/pluginst.dmh 
Support installation of the bzip2 plugin under name libh5bzip2.so
 2019-03-20 15:42:06 -06:00
Ed Hartnett
54eb9dad77
Merge branch 'master' into ejh_non_contoversial 2019-03-19 14:16:52 -06:00
Ward Fisher
e2b31ffae4
Merge branch 'master' into byterange.dmh 2019-03-19 12:05:44 -06:00
Ed Hartnett
d709624174 now run tst_put_vars_two_unlim_dim 2019-03-18 11:16:44 -06:00
Ed Hartnett
8799fff54b cleanup Makefile.am 2019-03-18 11:09:44 -06:00
Ed Hartnett
06c9f681f4 got distcheck target working 2019-03-18 10:15:18 -06:00
Ed Hartnett
94d9cd7c8f don't allow benchmarks for classic only builds 2019-03-18 08:40:18 -06:00
Ed Hartnett
e3c628482e moving metadata performance tests to nc_perf 2019-03-18 08:30:14 -06:00
Ed Hartnett
51b8ba10b4 attempting to get cmake build working with new nc_perf directory 2019-03-18 08:09:46 -06:00
Ed Hartnett
cf7126b294 fixing distcheck issues 2019-03-17 11:17:29 -06:00
Ed Hartnett
e48bd5e4c2 removed benchmarking stuff from nc_test4/Makefile.am 2019-03-17 10:57:45 -06:00
Ed Hartnett
286dddac4b moved many other benchmark tests to nc_perf 2019-03-17 10:57:00 -06:00
Ed Hartnett
95a0b8ddfb moved other benchmark programs to nc_perf 2019-03-17 08:30:06 -06:00
Ed Hartnett
e391a9b41f moved bm_file.c 2019-03-17 08:19:17 -06:00
Ed Hartnett
a3ca0e4333 move benchmark test script to nc_perf 2019-03-17 08:15:29 -06:00
Ed Hartnett
16c68218de move parallel benchmark test script to nc_perf 2019-03-17 08:14:27 -06:00
Ed Hartnett
73354a9862 moved tst_create_files from nc_test4 to nc_perf 2019-03-17 08:11:08 -06:00
Ed Hartnett
7902615b1c adding nc_perf directory 2019-03-17 08:03:27 -06:00
Ed Hartnett
f91e246699 turned off some ncdump test output 2019-03-12 09:26:15 -06:00
Ed Hartnett
c89fad34e0 only run some benchmark tests if utilities have been built 2019-03-12 09:23:49 -06:00
Dennis Heimbigner
15e4fdcbb4 Support installation of the bzip2 plugin under name libh5bzip2.so 
re: https://github.com/Unidata/netcdf-c/issues/1347

It turns out that the plugin libraries (bzip2 and misc) were
being installed as part of 'make installed'. This was not intended
behavior. But after some discussion in the above issue, it was decided
to install the bzip2 plugin. However, in order to avoid naming conflicts,
the plugin is installed under the name 'libh5bzip2.so'.
Note that this is automake behavior only; the install does not
(yet) occur using cmake.

Misc. unrelated changes
-----------------------
1. turn off some debug output in ncdump/Makefile.am
 2019-02-27 15:22:46 -07:00
Dennis Heimbigner
6d86aab022 Modify tst_filterparser to use baseline array 
re: https://github.com/Unidata/netcdf-c/pull/1337

tst_filterparser was creating but not using the baseline
array. Instead, it did the same thing inline. Fixed code
to use baseline array.
 2019-02-25 14:31:54 -07:00
Dennis Heimbigner
4c1ed0144b Fix nc_test4/tst_filter.sh for big endian 
re: issue https://github.com/Unidata/netcdf-c/issues/1338

Changes:

1. nc_test4/tst_filter.sh + nc_test4/ref_filteredvv.cdl --
   properly suppress _Endianness attribute
2. fix some warnings
 2019-02-24 22:20:01 -07:00
Dennis Heimbigner
0c59e13bf7 Master merge, conflict resolution, cleanup 2019-02-24 16:54:13 -07:00
Dennis Heimbigner
45a8a265b8 master merge 2019-02-23 17:14:12 -07:00
Ward Fisher
404f87b8c2 Turned of filterparser test when building static library. 2019-02-20 15:11:06 -07:00
Ward Fisher
53ba2ff316
Merge pull request #1311 from Unidata/filterexpr.dmh 
Extend nccopy -F option syntax.
 2019-02-15 15:16:25 -07:00
Dennis Heimbigner
a1f080db19
Merge branch 'master' into byterange.dmh 2019-02-13 14:45:53 -07:00
Ward Fisher
e32e0b1eb2
Merge branch 'master' into filterexpr.dmh 2019-02-12 09:48:03 -07:00
Ed Hartnett
909402ccd6
Merge branch 'master' into ejh_more_rename_woes_3 2019-02-12 05:49:04 -07:00
Dennis Heimbigner
5f0fdd7e5d Update Makefile.am to use ref_ filter files 2019-02-11 16:07:03 -07:00
Dennis Heimbigner
e932655888 Renamed the baseline files for tst_filter.sh 2019-02-09 15:14:13 -07:00
Dennis Heimbigner
a6b04c0c66 Extend nccopy -F option syntax. 
A user suggested that the nccopy -F option
syntax should be extended to support specification
of multiple (or all) variables in a single -F option.

The new syntax allows:

1. '*' as the name of the variable; this means apply the
   filter to all variables in the data set.
2. *var1|var2|...* as the variable name to indicate that the filter
   should be applied to the multiple specified variables.
 2019-02-08 18:48:17 -07:00
Ward Fisher
4c6d56abc0
Merge branch 'master' into ejh_more_rename_woes_3 2019-02-07 14:28:46 -07:00
Ward Fisher
3a14251dd9
Merge branch 'master' into bigend.dmh 2019-02-07 14:28:39 -07:00