Commit Graph

382 Commits

Author SHA1 Message Date
Ward Fisher
246b56dedd
Revert "fix cdf5 configure option" 2018-06-29 14:23:40 -06:00
Wei-keng Liao
5d16b2ddcc update check message for --disable-cdf5 2018-06-28 09:49:21 -05:00
Wei-keng Liao
d122d53c78 fix cdf5 configure option 2018-06-28 02:26:42 -05:00
Dennis Heimbigner
1299a0fcee The Jetstream remote test server is now working.
So it now becomes the first default test server to try.
This also means that the dap4 remote testing is enabled.
The only issue to watch is to see if the jetstream-based
server can stay up for significant periods of time.
A uptimerobot (https://uptimerobot.com) has been set ups
to monitor this hourly, so we shall see.
2018-06-26 13:58:45 -06:00
Ed Hartnett
2ca8526278 merged master 2018-06-14 16:57:38 -06:00
Ed Hartnett
c172acab98 more magic numbers 2018-06-06 12:54:03 -06:00
Ed Hartnett
d556dcb2c9 udf1 stuff 2018-06-03 06:28:55 -06:00
Ed Hartnett
01d1364331 user defined formats working 2018-06-03 06:14:23 -06:00
Ed Hartnett
0f0cd5085a configure options for user-defined formats 2018-06-02 07:13:08 -06:00
Ed Hartnett
b9c0fd473d
Merge branch 'master' into ejh_logging 2018-05-17 04:26:28 -06:00
Ward Fisher
3f83cc4926 Merge branch 'master' into inmem2.dmh 2018-05-16 14:24:19 -06:00
Ed Hartnett
c06ec6aa48
Merge branch 'master' into ejh_logging 2018-05-14 17:17:36 -06:00
Ed Hartnett
ebc6f1fd86 change to trigger CI 2018-05-13 08:38:21 -06:00
Ed Hartnett
60f7732142 cleaned up handling of classic only builds 2018-05-13 06:35:19 -06:00
Ed Hartnett
82c80c8c6c fixed issue building without nc_set_log_level 2018-05-12 11:46:04 -06:00
Ed Hartnett
27a74dee54 now always define nc_set_log_level unless user disables 2018-05-12 11:27:11 -06:00
Dennis Heimbigner
3c7ffcc6d1 Fix https://github.com/Unidata/netcdf-c/issues/963
Fix https://github.com/Unidata/netcdf-c/issues/962

1. remove the --disable-diskless option since it is no
   longer needed. Similarly for CMakeLists.txt.
2. Fixed nc4files.c where BAIL and return were mixed
   leading to situation where cleanup code was not
   being invoked. This probably occurs elsewhere,
   but I did not find any specifically.
2018-05-11 15:30:19 -06:00
Ed Hartnett
c402b79ed8 merged changes from master 2018-05-08 12:13:03 -06:00
Ed Hartnett
5526ca65d1 created libhdf5, moved some files 2018-05-08 11:58:01 -06:00
Dennis Heimbigner
9aa1e9a14e master merge 2018-05-03 21:02:12 -06:00
luz.paz
74fbacdb82 Misc. source comment typos
Some are user-facing. Found via `codespell` and through the downstream FreeCAD.
2018-04-26 23:04:01 -04:00
Dennis Heimbigner
ff212442f1 merge master and conflict resolve 2018-04-26 14:22:01 -06:00
Dennis Heimbigner
0a44d9ae3a Merge branch 'master' into inmemory.dmh 2018-04-23 11:30:14 -06:00
Dennis Heimbigner
d3b309722e re: gh issue https://github.com/Unidata/netcdf-c/issues/911
I took Ed's advice and moved the plugin stuff to its own
top-level directory. This is an attempt to solve the problem of
copying files that we have experienced. In any case, it will
serve as a place to stick additional plugins.
2018-04-21 20:10:47 -06:00
Ward Fisher
1ff184d988 Enabled CDF5 support by default, in support of https://github.com/Unidata/netcdf-c/issues/931 2018-04-19 13:26:58 -06:00
Dennis Heimbigner
4739cd3225 Master merge and conflict resolution 2018-04-12 21:51:17 -06:00
Ward Fisher
e2e2c2117f
Merge branch 'master' into index.dmh 2018-04-02 18:13:34 -06:00
Ed Hartnett
bf3757c2d6
Merge branch 'master' into ejh_valgrind_3 2018-03-30 18:48:37 -06:00
Ed Hartnett
4652d9c3df fixed spaces 2018-03-28 18:04:24 -06:00
Ed Hartnett
af79dfa14d new method of using valgrind 2018-03-28 13:54:05 -06:00
Ward Fisher
36c4b7947d Merge branch 'master' into newhash1.dmh 2018-03-20 11:20:14 -06:00
Dennis Heimbigner
cc136cad08 Add a configurable "test case" that will create
and then open a file with a lot of metadata.
The test is configurable to determine the parameters
for the created metadata.
2018-03-17 16:25:13 -06:00
Dennis Heimbigner
25f062528b This completes (for now) the refactoring of libsrc4.
The file docs/indexing.dox tries to provide design
information for the refactoring.

The primary change is to replace all walking of linked
lists with the use of the NCindex data structure.
Ncindex is a combination of a hash table (for name-based
lookup) and a vector (for walking the elements in the index).
Additionally, global vectors are added to NC_HDF5_FILE_INFO_T
to support direct mapping of an e.g. dimid to the NC_DIM_INFO_T
object. These global vectors exist for dimensions, types, and groups
because they have globally unique id numbers.

WARNING:
1. since libsrc4 and libsrchdf4 share code, there are also
   changes in libsrchdf4.
2. Any outstanding pull requests that change libsrc4 or libhdf4
   are likely to cause conflicts with this code.
3. The original reason for doing this was for performance improvements,
   but as noted elsewhere, this may not be significant because
   the meta-data read performance apparently is being dominated
   by the hdf5 library because we do bulk meta-data reading rather
   than lazy reading.
2018-03-16 11:46:18 -06:00
Ward Fisher
ede8f1b02e Bumping to post-4.6.1-release, for merge back into master. 2018-03-15 11:29:32 -06:00
Ed Hartnett
17f7a76356 moved HDF4 tests 2018-03-05 03:45:18 -07:00
Ward Fisher
c359a0e96a
Merge branch 'master' into newhash1.dmh 2018-03-04 22:40:51 -07:00
Ward Fisher
faad52041f Merge branch 'ejh_valgrind_removal_unidata_again' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into pr-aggregation2.wif 2018-03-02 14:22:42 -07:00
Dennis Heimbigner
618f786053 Merge branch 'master' into inmemory.dmh 2018-02-28 10:46:02 -07:00
Ward Fisher
1f6264273e
Merge branch 'master' into newhash1.dmh 2018-02-27 12:15:06 -07:00
Ed Hartnett
45329862a8 removed valgrind stuff 2018-02-27 08:36:12 -07:00
Ward Fisher
18c47417f7 Updated ac, cmake based builds to require parallel functionality when parallel tests are requested. 2018-02-26 17:08:26 -07:00
Ward Fisher
43b9c6302c Fix in support of https://github.com/Unidata/netcdf-c/issues/881 2018-02-26 12:56:10 -07:00
Dennis Heimbigner
ccc70d640b re: esupport MQO-415619
and https://github.com/Unidata/netcdf-c/issues/708

Expand the NC_INMEMORY capabilities to support writing and accessing
the final modified memory.

Three new functions have been added:
nc_open_memio, nc_create_mem, and nc_close_memio.

The following new capabilities were added.
1. nc_open_memio() allows the NC_WRITE mode flag
   so a chunk of memory can be passed in and be modified
2. nc_create_mem() allows the NC_INMEMORY flag to be set
   to cause the created file to be kept in memory.
3. nc_close_mem() allows the final in-memory contents to be
   retrieved at the time the file is closed.
4. A special flag, NC_MEMIO_LOCK, is provided to ensure that
   the provided memory will not be freed or reallocated.

Note the following.
1. If nc_open_memio() is called with NC_WRITE, and NC_MEMIO_LOCK is not set,
   then the netcdf-c library will take control of the incoming memory.
   This means that the original memory block should not be freed
   but the block returned by nc_close_mem() must be freed.
2. If nc_open_memio() is called with NC_WRITE, and NC_MEMIO_LOCK is set,
   then modifications to the original memory may fail if the space available
   is insufficient.

Documentation is provided in the file docs/inmemory.md.
A test case is provided: nc_test/tst_inmemory.c driven by
nc_test/run_inmemory.sh

WARNING: changes were made to the dispatch table for
the close entry. From int (*close)(int) to int (*close)(int,void*).
2018-02-25 21:45:31 -07:00
Dennis Heimbigner
8cb1fc4cfe This is the second step in refactoring the libsrc4 code.
The first was branch newhash0.dmh.

As with newhash0.dmh, these changes should be transparent.
2018-02-24 20:36:24 -07:00
Ward Fisher
40805e5dfa
Merge branch 'master' into ejh_hdf4_dispatch_unidata2 2018-02-16 13:02:05 -07:00
Ben Boeckel
b432a527c4 c: remove __CHAR_UNSIGNED__
In C, `char`, `signed char`, and `unsigned char` are three separate,
distinct types, so just because `char` happens to be signed does not
mean it is interchangeable with `signed char`.
2018-02-14 17:24:49 -05:00
Ben Boeckel
a7057925d6 configure: remove unused configure checks
These checks all control variables which are unused within the codebase.
2018-02-14 17:24:45 -05:00
Ed Hartnett
111cef3891 disable HDF4 if netCDF-4 is not enabled 2018-02-08 11:35:27 -07:00
Ed Hartnett
2358d4a910 moved HDF4 to its own dispatch layer 2018-02-08 06:20:58 -07:00
Ward Fisher
b268f268bd Merge branch 'ejh_dims_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-05 11:43:41 -07:00