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529 Commits

Author SHA1 Message Date
Ward Fisher
9f716a228f
Merge branch 'master' into inmemory.dmh 2018-05-04 16:15:22 -06:00
Dennis Heimbigner
9aa1e9a14e master merge 2018-05-03 21:02:12 -06:00
Ed Hartnett
6e25c75947
Merge branch 'master' into ejh_move_tests 2018-04-30 17:53:39 -06:00
luz.paz
74fbacdb82 Misc. source comment typos 
Some are user-facing. Found via `codespell` and through the downstream FreeCAD.
 2018-04-26 23:04:01 -04:00
Ed Hartnett
507717e803
Merge branch 'master' into ejh_move_tests 2018-04-26 18:47:48 -06:00
Dennis Heimbigner
ff212442f1 merge master and conflict resolve 2018-04-26 14:22:01 -06:00
Greg Sjaardema
09b0a76a01
Add missing ERR Macro 
The ERR macro was  missing from a couple tests.
 2018-04-25 09:54:31 -06:00
Ward Fisher
65f7dd0397
Merge branch 'master' into ejh_move_tests 2018-04-23 13:36:53 -06:00
Dennis Heimbigner
0a44d9ae3a Merge branch 'master' into inmemory.dmh 2018-04-23 11:30:14 -06:00
Ed Hartnett
1f9a78c6eb fixed distcheck problem 2018-04-23 03:29:37 -06:00
Ed Hartnett
b5e282996c moved tests 2018-04-23 03:19:11 -06:00
Dennis Heimbigner
d3b309722e re: gh issue https://github.com/Unidata/netcdf-c/issues/911 
I took Ed's advice and moved the plugin stuff to its own
top-level directory. This is an attempt to solve the problem of
copying files that we have experienced. In any case, it will
serve as a place to stick additional plugins.
 2018-04-21 20:10:47 -06:00
Ed Hartnett
f36ae96ee4
Merge branch 'master' into ejh_fill_test 2018-04-19 15:41:38 -06:00
Ward Fisher
9a1172fbb0 Replace quotes when including system includes, in support of https://github.com/Unidata/netcdf-c/issues/928 2018-04-18 10:51:03 -06:00
Ed Hartnett
48c92cbdc3
Merge branch 'master' into ejh_fill_test 2018-04-16 16:35:09 -06:00
Dennis Heimbigner
c66f1d53bb missing file 2018-04-14 12:01:52 -06:00
Ward Fisher
e2e2c2117f
Merge branch 'master' into index.dmh 2018-04-02 18:13:34 -06:00
Ed Hartnett
168340a8b6 added test for utf8 normalization for variable rename 2018-03-30 11:26:47 -06:00
Ed Hartnett
0e454a75c2 added fill mode test 2018-03-30 10:20:33 -06:00
Ed Hartnett
af79dfa14d new method of using valgrind 2018-03-28 13:54:05 -06:00
Dennis Heimbigner
1246dd189b merge master 2018-03-20 21:50:58 -06:00
Ward Fisher
36c4b7947d Merge branch 'master' into newhash1.dmh 2018-03-20 11:20:14 -06:00
Dennis Heimbigner
dc8c08f939 forgot to add files to repo 2018-03-17 19:09:49 -06:00
Dennis Heimbigner
cc136cad08 Add a configurable "test case" that will create 
and then open a file with a lot of metadata.
The test is configurable to determine the parameters
for the created metadata.
 2018-03-17 16:25:13 -06:00
Dennis Heimbigner
25f062528b This completes (for now) the refactoring of libsrc4. 
The file docs/indexing.dox tries to provide design
information for the refactoring.

The primary change is to replace all walking of linked
lists with the use of the NCindex data structure.
Ncindex is a combination of a hash table (for name-based
lookup) and a vector (for walking the elements in the index).
Additionally, global vectors are added to NC_HDF5_FILE_INFO_T
to support direct mapping of an e.g. dimid to the NC_DIM_INFO_T
object. These global vectors exist for dimensions, types, and groups
because they have globally unique id numbers.

WARNING:
1. since libsrc4 and libsrchdf4 share code, there are also
   changes in libsrchdf4.
2. Any outstanding pull requests that change libsrc4 or libhdf4
   are likely to cause conflicts with this code.
3. The original reason for doing this was for performance improvements,
   but as noted elsewhere, this may not be significant because
   the meta-data read performance apparently is being dominated
   by the hdf5 library because we do bulk meta-data reading rather
   than lazy reading.
 2018-03-16 11:46:18 -06:00
Ward Fisher
1e0cf1136c
Merge branch 'master' into ncpyfilter.dmh 2018-03-08 15:48:40 -07:00
Ed Hartnett
4e646e03f6 fixed cmake build file 2018-03-05 05:03:46 -07:00
Ed Hartnett
17f7a76356 moved HDF4 tests 2018-03-05 03:45:18 -07:00
Ward Fisher
c359a0e96a
Merge branch 'master' into newhash1.dmh 2018-03-04 22:40:51 -07:00
Dennis Heimbigner
7b324657d4
Merge branch 'master' into ncpyfilter.dmh 2018-03-02 19:49:43 -07:00
Dennis Heimbigner
dd4e71c150 1. Solve issue raised on netcdfgroup mailing list: 
https://www.unidata.ucar.edu/mailing_lists/archives/netcdfgroup/2018/msg00020.html
See docs/filters.md for a detailed description of the solution.
Basically we add nccopy flags "-F none" and "-F <varname>:none"
to suppress output compression as desired.

2. Add tests to nc_test4/tst_filter.sh to test out the solution.
 2018-03-02 16:55:58 -07:00
Ward Fisher
faad52041f Merge branch 'ejh_valgrind_removal_unidata_again' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into pr-aggregation2.wif 2018-03-02 14:22:42 -07:00
Ed Hartnett
49ebcc0e57 fixed problem of test file 2018-02-27 11:10:04 -07:00
Ed Hartnett
64e5742d88 added tst_bug324 to cmake build 2018-02-27 08:53:58 -07:00
Ed Hartnett
45329862a8 removed valgrind stuff 2018-02-27 08:36:12 -07:00
Dennis Heimbigner
8cb1fc4cfe This is the second step in refactoring the libsrc4 code. 
The first was branch newhash0.dmh.

As with newhash0.dmh, these changes should be transparent.
 2018-02-24 20:36:24 -07:00
Ward Fisher
a8faac9292
Merge branch 'master' into classic_ext_ncid 2018-02-22 17:15:34 -07:00
Ward Fisher
8e169175e4
Merge branch 'master' into newhash0.dmh 2018-02-22 14:55:31 -07:00
Ward Fisher
f9f27c5ab7
Merge branch 'master' into newhash0.dmh 2018-02-21 14:19:43 -07:00
Ed Hartnett
9de58cad99
Merge branch 'master' into ejh_extra_tests 2018-02-19 18:52:50 -07:00
Ed Hartnett
ca5f314fc0 minor test cleanup 2018-02-16 09:00:15 -07:00
Ed Hartnett
13fcc67d90
Merge branch 'master' into ejh_hdf4_dispatch_unidata2 2018-02-15 13:25:11 -07:00
Ed Hartnett
b0a8d4ee30 fixed merge issue 2018-02-14 07:58:50 -07:00
Ed Hartnett
41eb0f26c1
Merge branch 'master' into ejh_extra_tests 2018-02-13 15:48:35 -07:00
Ed Hartnett
e5cbf259ba fixed string memory leak 2018-02-13 14:17:15 -07:00
Ed Hartnett
cb4722a0cf fix for memory problem in tst_vars2.c 2018-02-13 13:49:29 -07:00
Ward Fisher
878b107d36 Corrected overflow error in support of https://github.com/Unidata/netcdf-c/issues/861 2018-02-13 12:18:06 -07:00
Ed Hartnett
dd41680f90 added rename test 2018-02-12 10:13:31 -07:00
Ed Hartnett
dbbd5094cb added rename test to CMakeLists.txt 2018-02-12 10:12:49 -07:00
Ed Hartnett
32e2798dde added rename test 2018-02-12 10:08:59 -07:00