Commit Graph

101 Commits

Author SHA1 Message Date
dmh
a23f750f5d reduce # processors for run_pnetcdf_test.sh 2014-06-20 20:22:55 -06:00
Ward Fisher
7f812b367e Manual merge of pull request https://github.com/Unidata/netcdf-c/pull/64 contributed by nschloe. Assorted CMake improvements. 2014-06-11 15:51:31 -06:00
Ward Fisher
44fae42214 Cleaned up indentation, white space in multiple CMakeLists.txt files. 2014-04-21 11:15:33 -06:00
Ward Fisher
a0c5a08bf7 Changed large_file.c so that overly large variables are allocated dynamically, not at link time. 2014-03-19 12:47:06 -06:00
dmh
582410a407 [NCF-273]/HZY-708311
Add a new function called nc_inq_format_extended that
returns more detailed format information (vis-a-vis
nc_inq_format) about an open dataset.

Note that the netcdf API will present the file as if it had
the format specified by nc_inq_format.  The true file
format, however, may not even be a netcdf file; it might be
DAP, HDF4, or PNETCDF, for example. This function returns
that true file type.  It also returns the effective mode for
the file.

signature: nc_inq_format_extended(int ncid, int* formatp, int* modep)
where
* ncid is the NetCDF ID from a previous call to nc_open() or
  nc_create().
* formatp is a pointer to a location for returned true format.
* modep is a pointer to a location for returned mode flags.

Refer to the actual list in the file netcdf.h to see the
currently defined set.

Also added test cases (tst_formatx*).
2013-12-22 12:53:20 -07:00
Quincey Koziol
b3044de434 Refactored read_scale(), memio_new(), var_create_dataset() and makespecial()
to clean up resources properly on failure.

Refactored doubly-linked list code for objects in the libsrc4 directory,
    cleaning up the add/del routines, breaking out the common next/prev
    pointers into a struct and extracting the add/del operations on them,
    changed the list of dims to add new dims in the same order as the other
    types, made all add routines able to optionally return a pointer to the
    newly created object.

Removed some dead code (pg_var(), nc4_pg_var1(), nc4_pg_varm(), misc. small
    routines, etc)

Fixed fill value handling for string types in nc4_get_vara().

Changed many malloc()+strcpy() pairs into calls to strdup().

Cleaned up misc. other minor Coverity issues.
2013-12-08 03:29:26 -06:00
Ward Fisher
001d950548 Removed a debug statement. 2013-11-04 13:34:20 -07:00
Ward Fisher
bda59030cb Replaced call to fstat with call to filelength, on apropriate system. 2013-11-01 16:30:33 -06:00
Ward Fisher
78d19f69fd Updating for Windows Large File Support. 2013-10-16 16:44:11 -06:00
dmh
10b0ac536f [NCF-267]/SAI-630695
Add support for embedded NUL characters
in character arrays and added some test cases.

Note that embedded NULs in netcdf-4
string constants are still illegal. This is
because strings are not counted in the netcdf
API, so they are implicitly NUL terminated.
2013-09-23 17:11:59 -06:00
Ward Fisher
55eed7ffa1 Removed stray (but harmless) debugging info. Updated windows-binaries documentation to allow both latest stable release as well as latest release candidate. 2013-08-29 15:48:03 -06:00
Ward Fisher
a595c62d7f Updated RELEASE_NOTES with reference to LFS Jira ticket. Temporarily removed an LFS test on Windows. 2013-08-28 16:30:41 -06:00
Ward Fisher
e117af0ab7 Made H5_USE_16_API an option in CMakeLists.txt, added string to describe what it does. 2013-08-28 12:43:45 -06:00
Ward Fisher
8ae3105e32 Corrected invocation of a large file test in the CMake system, when large file tests are enabled. 2013-08-28 09:38:43 -06:00
Ward Fisher
b6e4715104 Added fixes to CMake-based system, when building pnetcdf. 2013-08-26 13:50:27 -06:00
Ward Fisher
33d3d06971 Added initial 'make dist', 'make distcheck' support to
CMake-based builds.
2013-06-03 16:42:04 +00:00
Russ Rew
946a7ab8b5 Fix contributed by Nath Gopalaswamy to large file problem reading
netCDF classic or 64-bit offset files that have a UINT32_MAX flag for
large last record size of a variable that has values larger than 1
byte.  This problem had previously been fixed for *writing* such data,
but was only tested with an ncbyte variable.  Fixed test to
demonstrate problem and the fix.

More updates to chunking documentation, cosmetic fixes for some
"--option=" documentation that doxygen turns into mdash.
2013-05-31 20:18:18 +00:00
Dennis Heimbigner
c583f91992 merge with trunk and fix conflicts 2013-05-10 17:04:28 +00:00
Dennis Heimbigner
f17e7324c1 Rebuilt the compose operation in dceconstraints.c. The
revisions are simpler, and I hope, clearer than the all
previous versions.  Part of the code taken from the
ucar.nc2.Range.compose function.  Modified to handle edge
cases not handled in the Range.compose function.
2013-04-19 19:55:43 +00:00
Dennis Heimbigner
4e41843740 1) fix some minor bugs when pnetcdf is enabled 2)Comment out some apparently unused procedures 2013-03-25 17:12:50 +00:00
Dennis Heimbigner
dea3c726c8 merge trunk into this branch 2013-03-15 20:31:07 +00:00
Ward Fisher
ddf3c31bb0 Corrected a handful of syntax issues in CMake config files,
probably introduced more.  

Added CMake-related files to Makefile.am files for inclusion
when creating a distribution package.
2013-02-20 23:28:28 +00:00
Ward Fisher
49b144143d CMake fixes for enabling MMAP tests. 2013-02-14 20:24:02 +00:00
Ward Fisher
51848614c3 Corrected parallel support in CMake, including
library checks and parallel IO tests.  Updated 
CMake-related documentation.
2013-02-12 22:22:54 +00:00
Russ Rew
3ef3b35a94 Refactor to share functions between ncdump and nccopy. Merge nccopy
enhancements, based on contributed code from Martin van Driel, to
support -v, -g, -V, and -G options for selecting groups and variables
in output.  Fix all clang warnings from nccopy and ncdump sources, as
well as a few other cleanup changes to testing code.
2013-01-23 17:45:29 +00:00
Ward Fisher
91188cea7a Merging CMake branch into trunk. Changes include:
CMake related changes in CMakeLists.txt files,
cmake_config.h.in. Other changes relate to 
Windows-specific issues, and changes made
when regenerating generated source files.
2013-01-15 22:43:09 +00:00
Ward Fisher
cf0d0b54f2 Merged latest changes from cmake branch. Fixed a test file, and changed a deallocation call to avoid throwing an error on Windows related to cross-dll memory-management. 2012-12-07 23:21:27 +00:00
Ward Fisher
81280c7878 Merge from latest netcdf-cmake branch.
- Fixes for Windows.
- CMake-based changes (functionality, tests).
- Smattering of coverity-informed bug-fixes.
2012-12-05 18:35:42 +00:00
Ward Fisher
d0a665f83f Including .c files generated from .m4 to accomodate
Windows users (who generally will lack m4).  This policy
can be re-evaluated if need be.
2012-10-02 16:45:27 +00:00
Ward Fisher
c271c81ac4 2012-09-14 21:35:25 +00:00
Ward Fisher
235fc6bb13 Merged latest trunk into branch 2012-08-22 19:52:24 +00:00
Ward Fisher
5ebda8c08f Correcting an arithmetic error present in nc_test under gcc on Windows. 2012-08-22 19:19:04 +00:00
Russ Rew
24a1cd0718 Fix test of H5Tget_size() return so it can actually detect an error.
Remove some dead code.  Fix declaration of X_INT_MIN in tests.h.
2012-08-22 14:57:30 +00:00
Ward Fisher
e8453be1e5 Merged from trunk into branch 2012-08-20 18:30:04 +00:00
Russ Rew
8d53da4826 Fixed bug "adding a bad _FillValue" bug (NCF-190). Fixed minor bugs
reported by static analysis, including memory leak in ncdump, missing
size_t cast for chunk cache.  Fixed various doc problems, including
byte vs. char issues, missing NC_UBYTE in type list, needed link to
"Building with Windows" page.
2012-08-16 18:31:48 +00:00
Ward Fisher
c8febf92ed Modified related to m4 file conversion macro. 2012-08-13 16:10:36 +00:00
Ward Fisher
14619ec4c4 2012-08-09 18:40:41 +00:00
Ward Fisher
0607b62375 Added coverage test flags to CMakeLists.txt files. 2012-08-09 17:07:41 +00:00
Ward Fisher
5e16f2c80c 2012-08-09 16:39:13 +00:00
Ward Fisher
0a964ad8b1 Updated CMake files, added a few changes to fix linux-based compile warnings. 2012-08-07 21:34:55 +00:00
Ward Fisher
02828e917a Integrated more tests, added additional CMake functionality 2012-08-06 23:07:40 +00:00
Ward Fisher
e2293a4368 Begin integrating CTest and CDash functionality. 2012-08-06 20:53:34 +00:00
Ward Fisher
59960fcc20 Minor fixes (dead code) to correct errors found by Coverity 2012-07-30 21:49:16 +00:00
Dennis Heimbigner
a6b932826b add NC_MMAP flag and tests 2012-06-23 19:25:49 +00:00
Russ Rew
79cde861ac Delete obsolete libdiskless directory, replaced by new diskless
implementation.  Deleted obsolete win32, soon to be replaced by Ward's
Windows 32- and 64-bit fixes for building with MSYS/MinGW.  Made
cosmetic cleanup to output of "make check" to make it easier for users
to interpret.  Fixed bug NCF-175: ncdump -t incorrectly interpreting
units attribute (such as "days") without a base time (such as "since
2007-01-01") as a time unit.

Changed name to 4.2.1-beta.
2012-06-12 21:50:02 +00:00
Russ Rew
d6d38094c2 Cleaned up tst_atts3.c test program. Fixed several bugs in detection
of NC_ERANGE errors, especially with unsigned types, resolving most
NCF-172 issues and confusion between long and long long types in
llibsrc/ncx.m4.  Eliminated some unnecessary tests, e.g. tests
for negative values for unsigned types.
2012-05-31 01:28:42 +00:00
Russ Rew
1f4eeafcb9 Fixed doxygen installation guide source file to preserve line breaks
in code and scripts.

Fixed bug NCF-171: error reading external int into longlong or writing
from longlong array to external int on 32-bit platforms and classic
format files.

Promoted test demonstrating NCF-171 bug from longlong array from
"extra test" to "test".
2012-05-29 15:50:15 +00:00
Russ Rew
dbaf62f5e6 Updated some links in Doxygen version of user guide. Fixed some
range_error checks in netCDF-4 type conversion code.  Made netCDF
attribute tests with type conversion more comprehensive and stringent,
fixing bugs identified with better tests.  Changed a test in
nc_test/tst_atts.c to use netCDF-3 file instead of netCDF-4 file,
because that directory is supposed to be for tests that work with
--disable-netcdf-4.  Added test demonstrating NCF-171 bug on 32-bit
platforms, only run when configured with --enable-extra-tests.
2012-05-24 16:29:22 +00:00
Dennis Heimbigner
5b2aee44a7 windows support fixes plus add --disable-diskless 2012-05-15 17:48:27 +00:00
Dennis Heimbigner
14c3dae49e more win32 fixes 2012-05-15 03:47:52 +00:00