Commit Graph

39 Commits

Author SHA1 Message Date
Ed Hartnett
0fbfc2bce4 more warnings 2017-11-30 09:16:29 -07:00
Ward Fisher
7796ecb196
Merge branch 'master' into vc9 2017-11-27 15:03:02 -07:00
Nehal J Wani
1b91bd89d4
Fix build on pre-C99 compilers
- Make sure that the variables are declared at the top of the block.
 - Add fix to enable inline for various compilers
2017-11-26 01:47:54 +05:30
Dennis Heimbigner
4db4393e69 Begin changing over to use strlcat instead of strncat because
strlcat provides better protection against buffer overflows.

Code is taken from the FreeBSD project source code. Specifically:
https://github.com/freebsd/freebsd/blob/master/lib/libc/string/strlcat.c
License appears to be acceptable, but needs to be checked by e.g. Debian.

Step 1:
1. Add to netcdf-c/include/ncconfigure.h to use our version
   if not already available as determined by HAVE_STRLCAT in config.h.
2. Add the strlcat code to libdispatch/dstring.c
3. Turns out that strlcat was already defined in several places.
   So remove it from:
	ncgen3/genlib.c
	ncdump/dumplib.c
3. Define strlcat extern definition in ncconfigure.h.
4. Modify following directories to use strlcat:
	libdap2 libdap4 ncdap_test dap4_test
   Will do others in subsequent steps.
2017-11-23 10:55:24 -07:00
Ward Fisher
16d6f94f30 Merge branch 'master' into filters.dmh 2017-11-13 11:15:02 -07:00
Ward Fisher
69e849468a Merge branch 'ejh_dap_warn' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into more_ejh_pulls 2017-11-06 15:00:54 -07:00
Ed Hartnett
3301c3f8dc fixed some warnings 2017-11-04 05:34:36 -06:00
Dennis Heimbigner
2d77e6451b Master merge 2017-10-28 14:06:39 -06:00
Dennis Heimbigner
9935d54fdf Merge master and resolve conflicts 2017-10-28 13:57:23 -06:00
Dennis Heimbigner
c8b2184409 Fix dap4 related warnings in https://github.com/Unidata/netcdf-c/issues/501.
The nc_test/util.c error is a typo. The libdap4/d4meta.c error only is shown
when using a 64 bit machine because then |size_t| == 64 bits
and |int| = 32bits.
2017-10-20 21:17:12 -06:00
Dennis Heimbigner
733da154c5 1. Keep up to date by merging master
2. Factored out the parameter string parsing for ncgen and nccopy
   int libdispatch/dfilter.c + include/ncfilter.h
3. Allow a parameter string to use constant types other than
   unsigned int. See docs/filters.md for details.
4. Moved the old content of  include/netcdf_filter.h into include/netcdf.h
   and removed include/netcdf_filter.h as no longer needed.
5. Force the test filter (bzip2) in nc_test4/filter_test to
   be built using BUILT_SOURCES.
2017-10-08 15:56:45 -06:00
Ward Fisher
4299653319 Updated an issue with libcurl and dap4 on Windows 2017-09-25 17:38:48 -06:00
Ward Fisher
67018ecabb Merge branch 'v4.5.0-release-branch' into netrc.dmh 2017-09-25 13:46:32 -06:00
Dennis Heimbigner
d1e17b5ee7 re: pull request: https://github.com/Unidata/netcdf-c/issues/487
The use of the following version-specific curl flags
is not always properly wrapped or aliased using
config.h HAVE_CURL... ifdefs.
# CURLOPT_USERNAME is not defined until curl version 7.19.1
# CURLOPT_PASSWORD is not defined until curl version 7.19.1
# CURLOPT_KEYPASSWD is not defined until curl version 7.16.4
  -- aliased as needed to CURLOPT_SSLKEYPASSWD
# CURLINFO_RESPONSE_CODE is not defined until curl version 7.10.7
  -- aliased as needed to CURLINFO_HTTP_CODE
# CURLOPT_CHUNK_BGN_FUNCTION is not defined until curl version 7.21.0
  -- not used in our code
2017-09-18 16:44:31 -06:00
Dennis Heimbigner
b7f6941da8 It is imperative that this fix goes into
v4.5-release-candidate branch and master branch ASAP.

The bug occurs in d4rc.c where strcmp is being applied to NULL.
Also, the code in which it occurs is debugging code, so it needs
to be #ifdef'd.  This fix may cause minor conflicts with other
outstanding pull requests that fix the same bug. But the
conflicts should be minor and easy to resolve.
2017-09-08 13:54:02 -06:00
Dennis Heimbigner
ad32350355 Oops. Forgot to convert over libdap4 use of NC_mktmp
and NC_readfile and NC_combinehostport.
2017-09-03 15:09:10 -06:00
Dennis Heimbigner
a2e0f069ec This pr should probably be delayed until after Version 4.5.
Primary change is to cleanup code and remove duplicated code.

1. Unify the rc file reading into libdispatch/drc.c. Eventually extend
   if we need rc file for netcdf itself as opposed to the dap code.
2. Unify the extraction from the rc file of DAP authorization info.
3. Misc. other small unifications: make temp file, read file.
4. Avoid use of libcurl when reading file:// because
   there is some kind of problem with the Visual Studio version.
   Might be related to the winpath problem.
   In any case, do direct read instead.
5. Add new error code NC_ERCFILE for errors in reading RC file.
6. Complete documentation cleanup as indicated in this comment
   https://github.com/Unidata/netcdf-c/pull/472#issuecomment-325926426
7. Convert some occurrences of #ifdef _WIN32 to #ifdef _MSC_VER
2017-09-02 18:09:36 -06:00
Dennis Heimbigner
3a99220789 Make branch compile under cmake 2017-08-31 15:32:41 -06:00
Dennis Heimbigner
8e2abdeed8 Initial version 2017-08-31 14:19:56 -06:00
Dennis Heimbigner
7c592cfb2a 1. Unify the rc file reading into libdispatch/drc.c. Eventually extend
if we need rc file for netcdf itself as opposed to the dap code.
2017-08-30 17:44:57 -06:00
Dennis Heimbigner
d8d4ed627a master merge 2017-08-29 18:05:46 -06:00
Dennis Heimbigner
bc9e41ae2b 1. Fix bug in ocrc.c#combinecredentials where a null user+pwd
generates garbage. This in turn interferes with using .netrc
because the garbage user+pwd can will override the
.netrc. Note that this may work ok sometimes
if the garbage happens to start with a nul character.

2. It turns out that the user:pwd combination needs to support
character escaping. One reason is the user may contain an '@' character.
The other is that modern password rules make it not unlikely that
the password will contain characters that interfere with url parsing.
So, the rule I have implemented is that all occurrences of the user:pwd
format must escape any dodgy characters. The escape format is URL escaping
of the form %XX. This applies both to user:pwd
embedded in a URL as well as the use of HTTP.CREDENTIALS.USERPASSWORD
in a .dodsrc/.daprc file. The user and password in .netrc must not
be escaped. This is now documented in docs/auth.md

The fix for #2 actually obviated #1. Now, internally, the user and pwd
are stored separately and not in the user:pwd format. They are combined
(and escaped) only when needed.
2017-08-29 14:11:15 -06:00
Dennis Heimbigner
de15ffd11d Fix cmake compile 2017-08-29 11:06:29 -06:00
Dennis Heimbigner
2e1e39ca8c Add a general szip test script 2017-08-28 18:11:24 -06:00
Dennis Heimbigner
ed44fd7306 Add szip support via libaec 2017-08-27 13:35:20 -06:00
Dennis Heimbigner
442f4d9bc9 Fix bug in ocrc.c#combinecredentials
where a null user+pwd generates
garbage. This in turn interferes
with using .netrc because the garbage
user+pwd can (sometimes) override
the .netrc.
Not entirely sure what is going on
because it works as is under e.g. cygwin.
In any case it needs fixing.
2017-08-25 14:42:22 -06:00
Ward Fisher
04f88f5d83 Corrected some potential buffer overruns flagged by clang via static analysis. 2017-08-15 12:19:05 -06:00
Dennis Heimbigner
86fc8745dc merge master and resolve conflicts 2017-08-12 15:50:31 -06:00
Ward Fisher
05d3d7e9f5 Merge remote-tracking branch 'origin/d4tempfile.dmh' into v4.5.0-release-branch 2017-08-07 10:12:36 -06:00
Dennis Heimbigner
4d8fbbf501 If DAP (2 or 4) is enabled, but diskless is disabled, then the
dap code will create a real temporary file in which to store the
converted metadata for the DAP .dds or .dmr.

It was assumed that the nc_close code would reclaim the
temporary file. For DAP2, reclamation occurs in the ncio
code. For DAP4, it was assumed that the libsrc4 code would do
the reclamation, but for whatever reason, this is not happening.
Thus, in this situation, a temporary file is left in the file
system. Aside from being irritating to users, this screws up
'make distcheck'.

So the DAP4 code is fixed to ensure that the temporary file is
properly reclaimed independent of the libsrc4 code.
2017-08-05 22:41:31 -06:00
Ward Fisher
9e7a902dcf Merge branch 'issue435.dmh' into multi-pull 2017-07-27 12:20:11 -06:00
Dennis Heimbigner
9719fbfbad re: hithub issue https://github.com/Unidata/netcdf-c/issues/435
Some temporary files are being left in a tempdir (e.g. /tmp
under *nix*).

The situation is described tersely in
netcdf-c/docs/auth.html#REDIR Basically, when a url is used that
requires redirection, a physical cookiejar file is required
to exist in the file system in order for this to work.

Since it was difficult to figure out when redirection was
being used (it was internal to libcurl) I needed to be prepared for that
eventuality. The result was that I always created a cookiejar file if one
was not specified in the rc file. This actually occurs in two places:
one inside oc2 and one inside libdap4.

The solution was two-fold:
1. do not use a cookiejar directory -- create cookiejar file directly
2. ensure that all cookiejar related files are reclaimed by nc_close().
Note that if nc_close (or nc_abort) is not called for whatever reason,
then reclamation will not occur.
2017-07-05 10:03:48 -06:00
Dennis Heimbigner
132ac21c46 ckp 2017-05-17 12:30:24 -06:00
Dennis Heimbigner
7c3164577e Finalize the compression support.
This relies on the HDF5 capability to
dynamically load compression filters.
Note that a compression filter is just
a subcase of filters.

The primary user-visible changes are as follows:
1. Add a standard header "netcdf_filter.h" that defines
   the necessary API extensions
2. Modify ncgen to support two new special attributes
   "_Filter_ID" and "_Filter_Parameters" so that compression
   can be turned on when creating a file using ncgen.
4. Add a detailed description of filtering support
   to the user's guide; see the file filters.md
5. Add a test case directory for this: nc_test4/filter_test.
   It is fragile and a ./configure flags (-enable-filter-test)
   is defined (default disabled) to shut this off this test
   to avoid spurious 'make check' failures.

Note that the HDF5 documentation is not up-to-date, so
much of what is encoded here comes from examining the
actual code in the file H5PL.c in the HDF5 source code.
2017-04-27 13:01:59 -06:00
Dennis Heimbigner
32fe709615 ckp 2017-04-14 11:05:30 -06:00
Dennis Heimbigner
e0e53a2c6d add in path conversion 2017-04-11 18:55:04 -06:00
Dennis Heimbigner
a2090ccc0d Add debug output for libdap4/d4read.c 2017-04-10 12:04:20 -06:00
Dennis Heimbigner
6d8809100f Fix pull request https://github.com/Unidata/netcdf-c/pull/374 (dap4.dmh)
1. When running under windows (as opposed to cygwin)
   we need to make sure to not user /cygdrive/ file paths.
   This was ocurring in libdap4/d4read.c, but may occur
   elsewhere.
2. Shell scripts in the git repo are not being checked-out
   with the executable mode set. Had core.filemode set to false.
   Was a major hassle to fix.
2017-04-03 21:39:44 -06:00
Dennis Heimbigner
3db4f013bf Primary change: add dap4 support
Specific changes:
1. Add dap4 code: libdap4 and dap4_test.
   Note that until the d4ts server problem is solved, dap4 is turned off.
2. Modify various files to support dap4 flags:
	configure.ac, Makefile.am, CMakeLists.txt, etc.
3. Add nc_test/test_common.sh. This centralizes
   the handling of the locations of various
   things in the build tree: e.g. where is
   ncgen.exe located. See nc_test/test_common.sh
   for details.
4. Modify .sh files to use test_common.sh
5. Obsolete separate oc2 by moving it to be part of
   netcdf-c. This means replacing code with netcdf-c
   equivalents.
5. Add --with-testserver to configure.ac to allow
   override of the servers to be used for --enable-dap-remote-tests.
6. There were multiple versions of nctypealignment code. Try to
   centralize in libdispatch/doffset.c and include/ncoffsets.h
7. Add a unit test for the ncuri code because of its complexity.
8. Move the findserver code out of libdispatch and into
   a separate, self contained program in ncdap_test and dap4_test.
9. Move the dispatch header files (nc{3,4}dispatch.h) to
   .../include because they are now shared by modules.
10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts.
11. Make use of MREMAP if available
12. Misc. minor changes e.g.
	- #include <config.h> -> #include "config.h"
	- Add some no-install headers to /include
	- extern -> EXTERNL and vice versa as needed
	- misc header cleanup
	- clean up checking for misc. unix vs microsoft functions
13. Change copyright decls in some files to point to LICENSE file.
14. Add notes to RELEASENOTES.md
2017-03-08 17:01:10 -07:00