Commit Graph

7523 Commits

Author SHA1 Message Date
Ward Fisher
a89e1f73b8 Merge branch 'ncgenchunks.dmh' of https://github.com/DennisHeimbigner/netcdf-c into master 2020-09-09 10:24:33 -06:00
Ward Fisher
8c49ff1082
Merge pull request #1825 from DennisHeimbigner/nccopyc.dmh
Fix nccopy -c dim/x to actually use the dim/x value.
2020-09-08 16:37:28 -06:00
Dennis Heimbigner
62a4cc1ae0 Fix nccopy -c dim/x to actually use the dim/x value.
As it was, nccopy -c dim/x was sometimes being ignored. So
modify nccopy to properly take into account. This also required
a change to the nczarr code because it was not applying default
chunking in the same way as libhdf5.

Modify ncdump/tst_nccopy4.sh to test this feature properly.
Also add a similar test to nczarr_test.

Additionally, fix some other things that were causing Visual
Studio builds with testing to not work.
* fix curl testing under CMake to properly handle case
  where DAP is disabled, but byterange support is enabled.
* properly test and/or define uintptr_t
* Convert _O_XXX to O_XXX flags used by open();
2020-09-01 13:44:24 -06:00
Ward Fisher
cb6e990cd1
Merge pull request #1823 from Unidata/reapply-gh1814.wif
Reapply fix supposedly introduced in 1814
2020-08-29 19:18:19 -06:00
Ward Fisher
80cf5e3d79 Modify isnan() operation 2020-08-29 18:42:20 -06:00
Ward Fisher
aad64e715d
Merge pull request #1810 from NOAA-GSD/ejh_fix_att
Add test for using attributes like GFDL FMS does
2020-08-27 16:15:37 -06:00
Ward Fisher
c38c3634f6
Merge pull request #1820 from Unidata/osx-fix.wif
Minor update for OSX
2020-08-26 17:24:59 -06:00
Ward Fisher
b84f1361a4
Merge pull request #1800 from LProx2020/patch-2
Copyediting Updates
2020-08-26 16:33:26 -06:00
Ward Fisher
5541dcf7de Removed unneeded code on OSX. 2020-08-26 16:29:51 -06:00
Ward Fisher
a58f8f6f0e
Merge pull request #1814 from Unidata/revert-1813-revert-1792-nczarr-update1.dmh
Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries""
2020-08-18 15:33:14 -06:00
Ward Fisher
31dee0c4da
Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
Ward Fisher
c5355034c5
Merge pull request #1813 from Unidata/revert-1792-nczarr-update1.dmh
Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"
2020-08-17 17:16:34 -06:00
Ward Fisher
16c27ca13f
Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries" 2020-08-17 15:51:01 -06:00
Ward Fisher
c025e85a4a
Merge pull request #1792 from DennisHeimbigner/nczarr-update1.dmh
Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries
2020-08-17 14:22:31 -06:00
Dennis Heimbigner
616812f204
Merge branch 'master' into nczarr-update1.dmh 2020-08-14 13:03:24 -06:00
Ward Fisher
d23a3272a1
Merge pull request #1809 from NOAA-GSD/ejh_fix_test_2
fixed tst_h_par_compress.c
2020-08-13 16:42:11 -06:00
Ward Fisher
665eb151c8
Merge pull request #1811 from magnusuMET/bugfix/m4_out_of_tree
Generate configure files out of tree
2020-08-13 16:40:46 -06:00
Ward Fisher
9944174b96
Merge pull request #1736 from DennisHeimbigner/noopfilterclean.dmh
Make plugin noop1 be distcleaned
2020-08-12 16:18:21 -06:00
Dennis Heimbigner
d85bb6fe20 The big change for this commit is complete the
disengagement of enable-netcdf4 from enable-hdf5.
That is, with the advent of nczarr, it is possible
to turn off hdf5 but still need netcdf-4 enabled
because nczarr uses libsrc4, but not libhdf5.
This change involves a bunch of things:
1. Modify configure.ac and CMakelist to make enable_hdf5
   control if hdf5 support is provided. For back compatibility,
   disable-netcdf4 is treated as disable-hdf5. But internally,
   netcdf4 support is controlled only by the enabling of formats
   that require it.
2. In support of #1, modify .travis.yml to use enable/disable-hdf5
   instead of enable/disable-netcdf4.
3. test_common.in is modified to track selected features,
   including enable-hdf5 and enable-s3-tests. This is used in
   selected tests that mix netcdf-3 and netcdf4 tests.
4. The conflation of USE_HDF5 and USE_NETCDF4 is common in
   code, tests, and build files, so all of those had to be weeded out.
5. It turns out that some of the NC4_dim functions really are HDF5 specific,
   but are not treated as such. So they are moved from nc4dim.c to
   hdf5dim.c or hdf5dispatch.c
6. Some generic functions in libhdf5 can be (and were) moved to libsrc4.
2020-08-12 15:42:50 -06:00
Dennis Heimbigner
8b487baa3a Merge branch 'master' into nczarr-update1.dmh 2020-08-12 15:08:42 -06:00
Magnus Ulimoen
12d86675ef H5Znoop1.c copied to BINARY_DIR instead of SOURCE_DIR 2020-08-12 17:03:33 +02:00
Magnus Ulimoen
9d10e605c2 Move generated file to BINARY_DIR 2020-08-12 16:55:14 +02:00
Magnus Ulimoen
a3f2c5847f Configure netcdf_meta.h directly to BINARY_DIR 2020-08-12 16:14:23 +02:00
Magnus Ulimoen
8f1fc8a73c Generate m4 files out of tree 2020-08-12 16:14:23 +02:00
Edward Hartnett
b3d8a8c613 fixed comment 2020-08-12 07:59:45 -06:00
Edward Hartnett
bfe3313b3a fixed comment 2020-08-12 07:58:25 -06:00
Edward Hartnett
dc47df6b09 fixed up test 2020-08-12 07:54:43 -06:00
Edward Hartnett
b187e359ae adding test for attributes 2020-08-12 07:53:24 -06:00
Edward Hartnett
9c6b9bb72e fixed tst_h_par_compress.c 2020-08-12 07:28:49 -06:00
Dennis Heimbigner
da5431ff91 cleanup some LOOK code 2020-08-06 14:01:46 -06:00
Ward Fisher
a66b8ba0a9
Merge pull request #1804 from mandrakos/patch-1
Fix typo in postinstall script
2020-08-06 13:55:01 -06:00
Dennis Heimbigner
eef839e9e6 Disable all USE_PARALLEL code in libnczarr 2020-08-06 13:46:38 -06:00
John Correira
95bc80ba0a
Fix typo postinstall. 2020-08-06 15:27:20 -04:00
Dennis Heimbigner
931f6d0ad4 Define isnan and isinf for OSX 2020-08-04 19:22:42 -06:00
Dennis Heimbigner
70c873cd91 Merge branch 'nczarr-update1.dmh' of https://github.com/DennisHeimbigner/netcdf-c into nczarr-update1.dmh 2020-08-04 17:31:39 -06:00
Dennis Heimbigner
6074c8a02d Fix items in netcdf_meta.h 2020-08-04 17:31:24 -06:00
Ward Fisher
b9bb44f585
Merge pull request #1801 from DennisHeimbigner/ncgen3build.dmh
Update parser/lexer build process for ncgen3
2020-07-30 16:34:36 -06:00
Dennis Heimbigner
49b1f615e6 CMake fixes 2020-07-29 17:59:19 -06:00
Dennis Heimbigner
3da6ba8592 Malformed CMake 2020-07-29 16:52:10 -06:00
Dennis Heimbigner
6aff5a10d7 Update parser/lexer build process for ncgen3
Improve the ncgen3 process for building the parser
and lexer by making them match the process for ncgen.
Among other things, this entailed renaming some files.
2020-07-29 16:13:17 -06:00
Dennis Heimbigner
4044385832 Merge remote-tracking branch 'Unidata/master' 2020-07-28 12:28:09 -06:00
LProx2020
b2f01d06df
Merge pull request #4 from LProx2020/LProx2020-patch-2-addition-2-1
Email Removal
2020-07-28 12:20:12 -04:00
LProx2020
cb6bdacdd2
Email Removal
-Removed old UCAR email
2020-07-28 12:15:04 -04:00
Dennis Heimbigner
a905c886d1
Merge branch 'master' into nczarr-update1.dmh 2020-07-27 19:17:57 -06:00
Ward Fisher
75777bd34b
Merge pull request #1791 from bombipappoo/current-buffer-size
Correct destination buffer size to strlcat
2020-07-27 10:24:10 -06:00
Ward Fisher
8f6c4fe140
Merge pull request #1795 from bombipappoo/fix-set-formats
Fix format buffer size
2020-07-24 11:27:39 -06:00
LProx2020
d4fab8900f
Merge pull request #2 from LProx2020/LProx2020-patch-2-addition-1
Copyediting Updates 2
2020-07-23 10:48:53 -04:00
LProx2020
4661339789
Merge pull request #3 from LProx2020/LProx2020-patch-2-addition-2-1
Copyediting Updates 3
2020-07-23 10:46:30 -04:00
LProx2020
f2f7ffefa9
Update software.html
More fixes in collaboration with I.P.
- Adjusted ArcGIS and AgriMetSoft NetCDF-Extractor sections' text and spacing
 *Check to see if the spacing for these sections is correct
 *Did not address broken links, but should address both broken links and links that re-direct to unintended webpages
2020-07-23 10:28:00 -04:00
LProx2020
83e95ea907
Copyediting Updates #2
More fixes in collaboration with I.P.
* Did not fix spacing for the ArcGIS nor AgriMetSoft sections
* Did not address broken links, but should address both broken links and links that re-direct to unintended webpages
2020-07-23 10:00:01 -04:00