Commit Graph

23 Commits

Author SHA1 Message Date
Dennis Heimbigner
534364b069 This Pre removed #include <netcdf.h> from netcdf_mem.h.
In turn that caused some problems elsewhere because some files
did not include netcdf.h preceding netcdf_mem.h. Specifically,
building under visual studio fails.
So fix those cases that I can find. May need to
add more later.
2018-10-07 12:05:26 -06:00
Wei-keng Liao
ab2dbc0d84 Promote NC_var member len from size_t to long long to fix some problems of large-variable tests on 320bit platforms. 2018-06-15 15:08:05 -05:00
Ward Fisher
7b86b4d3d3
Merge branch 'master' into issue899.dmh 2018-03-26 22:31:29 -06:00
Dennis Heimbigner
efe2fa727e Fix bug: Index exceeds dimension bound
Fix github issue https://github.com/Unidata/netcdf-c/issues/899
which came from e-support UOY-859712.

The problem was that the vlen_max parameter
to libsrc/var.c#NC_check_vlen was of type size_t.
However, it is being called, sometimes, with values
of size X_INT64_MAX. The resulting truncation was
causing dimension failures as noted in the e-support
report.

Fix is to change the vlen_max argument (and some
local variables in NC_check_vlen) to be of declared
as unsigned long long.
2018-03-16 13:54:33 -06:00
Dennis Heimbigner
8cb1fc4cfe This is the second step in refactoring the libsrc4 code.
The first was branch newhash0.dmh.

As with newhash0.dmh, these changes should be transparent.
2018-02-24 20:36:24 -07:00
Dennis Heimbigner
727b613459 This is the initial step in moving to the new higher performance
(I hope) metadata mechanism. This mostly just adds new pieces of
code (e.g. nclistmap) and does some minor fixes.

It should be transparent to everything else.
The next set of changes will be the big step.
2018-02-08 19:53:40 -07:00
Ward Fisher
0d420fcfbb
Merge branch 'master' into cdf5_var_len 2018-02-02 10:31:46 -07:00
Wei-keng Liao
0f4a85b9f2 a clean commit for #383 2017-12-20 20:53:30 -06:00
Wei-keng Liao
294c734f64 add NC_check_voffs() to check whether the file starting offsets (begin) of all variables follows the same increasing order as they were defined. 2017-09-15 14:48:53 -05:00
Ward Fisher
051bd3b81a Merge branch 'master' into open_check_vlens 2017-05-05 17:02:36 -06:00
Ward Fisher
8dddd222a3 Merged master, DAP4 support into branch. 2017-04-19 09:29:35 -06:00
Wei-keng Liao
68a57832d6 enable nc_open to check the number of large variables allowed in CDF-1 and CDF-2 files 2017-04-03 22:07:36 -05:00
Dennis Heimbigner
3db4f013bf Primary change: add dap4 support
Specific changes:
1. Add dap4 code: libdap4 and dap4_test.
   Note that until the d4ts server problem is solved, dap4 is turned off.
2. Modify various files to support dap4 flags:
	configure.ac, Makefile.am, CMakeLists.txt, etc.
3. Add nc_test/test_common.sh. This centralizes
   the handling of the locations of various
   things in the build tree: e.g. where is
   ncgen.exe located. See nc_test/test_common.sh
   for details.
4. Modify .sh files to use test_common.sh
5. Obsolete separate oc2 by moving it to be part of
   netcdf-c. This means replacing code with netcdf-c
   equivalents.
5. Add --with-testserver to configure.ac to allow
   override of the servers to be used for --enable-dap-remote-tests.
6. There were multiple versions of nctypealignment code. Try to
   centralize in libdispatch/doffset.c and include/ncoffsets.h
7. Add a unit test for the ncuri code because of its complexity.
8. Move the findserver code out of libdispatch and into
   a separate, self contained program in ncdap_test and dap4_test.
9. Move the dispatch header files (nc{3,4}dispatch.h) to
   .../include because they are now shared by modules.
10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts.
11. Make use of MREMAP if available
12. Misc. minor changes e.g.
	- #include <config.h> -> #include "config.h"
	- Add some no-install headers to /include
	- extern -> EXTERNL and vice versa as needed
	- misc header cleanup
	- clean up checking for misc. unix vs microsoft functions
13. Change copyright decls in some files to point to LICENSE file.
14. Add notes to RELEASENOTES.md
2017-03-08 17:01:10 -07:00
Wei-keng Liao
c282d18080 add two fill value inquiry subroutines 2016-10-25 13:14:03 -05:00
Ward Fisher
00eaa53e0b Corrected an issue preventing gcc-4.4 from compiling netcdf. 2016-04-26 21:09:41 +00:00
Greg Sjaardema
1f9eb8093c Fix duplicate key issues in nc_hashmap
The addition of the nc_hashmap to facilitate quick
retrieval of var and dim by name did not take into
account key collisions -- two or more names hashed
to the same value.  If the keys matched, it assumed
that the names matched also.

This change fixes this incorrect assumption and
checks both the key (which is the hash of the name)
and if the keys match, it also checks that the names
match.

While there have been no instances of duplicate keys,
they are certain to occur and cause difficult to
debug issues. This fix eliminates that defect.
2016-04-05 09:07:40 -06:00
Greg Sjaardema
362e28948d Add hashmap for quick retrieval of dim and var 2016-03-22 07:29:00 -06:00
Ward Fisher
612b35a84c Merge branch 'master' into cdf-5, in preparation for merging the CDF-5 functionality into the master branch. This will be the key new feature for netcdf 4.4.0. 2015-11-05 13:40:35 -07:00
Ward Fisher
519a56019f Merge branch 'fix-typos' of https://github.com/tbeu/netcdf-c into tbeu-fix-typos 2015-10-16 14:16:09 -06:00
dmh
49597a64af merge-squash 2015-10-09 10:12:11 -06:00
Ward Fisher
dffaff8406 Further progress on [NCF-340], capturing previously-lost error code NC_EGLOBAL 2015-09-10 15:55:06 -06:00
tbeu
e2820e4d8a Fix common typos
Detected by https://github.com/vlajos/misspell_fixer
2015-08-20 11:42:05 +02:00
Dennis Heimbigner
5ca78309cc The effect of this change is to make the struct NC structure
contain as little file-type specific info as possible.  It
modifies especially libsrc so that all of the netcdf-3 data
that used to be in struct NC is now kept in a separate chunk
of data pointed to by the struct NC. This makes all of
current protocols consistent: netcdf-3, netcdf-4, and dap.
2012-09-06 19:44:03 +00:00