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1108 Commits

Author SHA1 Message Date
Kyle Shores
a82659b0e9 Replace ENABLE_TESTS with NETCDF_ENABLE_TESTS 2024-03-18 15:54:48 -05:00
Kyle Shores
8fd6dcb979 Replace ENABLE_S3 with NETCDF_ENABLE_S3 2024-03-18 15:54:15 -05:00
Kyle Shores
dba34ac5c2 Replace ENABLE_PNETCDF with NETCDF_ENABLE_PNETCDF 2024-03-18 15:54:02 -05:00
Kyle Shores
d1334f7b88 Replace ENABLE_NCZARR with NETCDF_ENABLE_NCZARR 2024-03-18 15:52:19 -05:00
Kyle Shores
ece5a776cb Replace ENABLE_DLL with NETCDF_ENABLE_DLL 2024-03-18 15:51:21 -05:00
Kyle Shores
d270aa8e93 Replace ENABLE_DAP with NETCDF_ENABLE_DAP 2024-03-18 15:51:14 -05:00
Kyle Shores
2bce1e6776 Replace ENABLE_CDF5 with NETCDF_ENABLE_CDF5 2024-03-18 15:51:04 -05:00
Kyle Shores
b4eb8bf019 Replace ENABLE_BYTERANGE with NETCDF_ENABLE_BYTERANGE 2024-03-18 15:50:57 -05:00
Ward Fisher
443195973a
Merge branch 'main' into find_pnetcdf 2024-03-11 16:02:54 -06:00
Ward Fisher
5973f3d683
Merge pull request #2847 from K20shores/packaging 
Use cmake netCDF with target_* for many options
 2024-03-11 15:55:36 -06:00
Ward Fisher
cc1494d988
Merge branch 'main' into awsdfalt.dmh 2024-03-05 12:50:08 -07:00
Kyle Shores
c29db073eb setting dll export on each target 2024-02-29 11:36:47 -06:00
Kyle Shores
dda2c2de69 merging main 2024-02-22 09:59:05 -06:00
Peter Hill
907e5cc43f
CMake: Use target_link_libraries with HDF5::HDF5 target 2024-02-16 10:51:20 +00:00
Ward Fisher
fb537e61eb Correct previous fix to remove inclusion of internal header. 2024-02-07 10:18:37 -07:00
Kyle Shores
7c2c955450 correcting target_sources 2024-02-07 10:06:46 -06:00
Kyle Shores
f9e3247164 merging main, addressing some PR comments 2024-02-07 09:53:45 -06:00
Ward Fisher
f557108b16 Make changes in support of https://github.com/Unidata/netcdf-c/issues/2859 2024-02-06 10:35:46 -07:00
Peter Hill
a051cb2928
Update bundled utf8proc to 2.9.0 
Commit 1fe43f5a6d9c628f717c5ec8aeaeae4a9adfd167

Closes #2804
 2024-02-02 16:31:20 +00:00
Kyle Shores
559c336a7a connecting dispatch to hdf5 2024-01-26 16:04:15 -06:00
Peter Hill
4835e43f33
CMake: Consistent casing of PNETCDF target 2024-01-24 10:51:23 +00:00
Peter Hill
a33ba11450
Merge branch 'main' into find_pnetcdf 
* main:
  Escape a character causing a doxygen error.
  Updated release notes.
  Added a comment block for future reference.
  more syntax fixes
  Update CMakeLists.txt
  CMake: Find HDF5 header we can safely include for other checks
  moving functions and macros to new file, lowercase things
  Update release notes.
  lowercase
  lower case
  lowercase
  moving functions and macros to a file
  CMake: Add support for UNITY_BUILD
  Change signature of `nczm_sortenvv` to take `size_t`
  Try to more consistently use `size_t` for argument of `nclistlength`
  Try to more consistently use `size_t` for `nclistget` index argument
  Include header for `size_t` in `nclist.h`
 2024-01-24 10:04:53 +00:00
Ward Fisher
13d9fc38c2
Merge branch 'main' into unity 2024-01-22 12:42:25 -08:00
Ward Fisher
42b3f5582e Added a comment block for future reference. 2024-01-22 12:37:35 -08:00
Ward Fisher
16bcb1ddb9 Merge branch 'silence-nclist-warnings' of https://github.com/ZedThree/netcdf-c into rebase-gh2812.wif 2024-01-19 11:11:21 -07:00
Peter Hill
fd6421d5c9
CMake: Don't use include_directories for pnetcdf 2024-01-17 17:17:59 +00:00
Julien Schueller
5537a60885 CMake: Add support for UNITY_BUILD 2024-01-12 10:18:29 +01:00
Ward Fisher
c1fb4b0bae
Merge pull request #2809 from ZedThree/silence-malloc-warnings 
Silence conversion warnings from `malloc` arguments
 2023-12-21 17:20:56 -07:00
Ward Fisher
01eae4ff27
Merge pull request #2801 from seanm/c23-fixes 
Replaced ancient K&R function declarations to be C23 compatible
 2023-12-19 16:53:08 -07:00
Sean McBride
56844001f5 Replaced ancient K&R function declarations to be C23 compatible 2023-12-13 22:49:04 -05:00
Ward Fisher
7ef8c95bc1
Merge pull request #2450 from gsjaardema/patch-53 
Minor fix to doxygen documentation
 2023-12-12 15:59:50 -07:00
Ward Fisher
64e9185bd7
Merge pull request #2761 from magnusuMET/bugfix/skip_bin_test_on_non_test 
Do not compile test program unless required
 2023-12-12 13:42:44 -07:00
Ward Fisher
2616e2c411
Merge pull request #2745 from e-kwsm/chmod-x 
chore: unset executable flag
 2023-12-11 17:28:46 -07:00
Ward Fisher
002e2869ab
Merge pull request #2691 from seanm/snprintf 
sprintf -> snprintf
 2023-12-11 15:46:51 -07:00
Sean McBride
4f15a9265e Removed a use of sprintf that required changing a function signature 2023-12-08 13:30:54 -05:00
Sean McBride
dfc2ac7296 Replaced trivial uses of sprintf with snprintf 
In all these cases the size of the buffer can be computed with sizeof.
 2023-12-08 13:30:38 -05:00
Dennis Heimbigner
27f615bebc Properly handle missing regions in URLS 
NOTE: it is important that this fix gets into 4.9.3

re: Issue https://github.com/Unidata/netcdf-c/issues/2798

## Modifications
* This PR includes PR https://github.com/Unidata/netcdf-c/pull/2813
* Support the following AWS environment variables in the internal S3 library
  (they are already supported by aws-sdk-cpp).
  - AWS_REGION
  - AWS_DEFAULT_REGION
  - AWS_ACCESS_KEY_ID
  - AWS_CONFIG_FILE
  - AWS_PROFILE
  - AWS_SECRET_ACCESS_KEY
  - (source https://docs.aws.amazon.com/cli/latest/userguide/cli-configure-envvars.html).
* Support an empty region when specifying s3.amazonaws.com as the host.
* Move some S3/AWS related functions to ds3util.c
* Add a test case to test empty region and AWS_[DEFAULT]_REGION.
 2023-12-02 21:03:59 -07:00
Peter Hill
653e09fd6d
Try to more consistently use size_t for nclistget index argument 2023-11-28 16:28:31 +00:00
Dennis Heimbigner
58dd53022f Fix some important bugs in various files 
The most critical bug is in nch5s3comms.c.
I for some reason assumed that signing keys
did not contain any zero bytes. But obviously
it can, so a test was removed.

Other fixes:
1. Guarantee allocated memory is initialized to all zeros.
2. Cleanup errmsg handling in libncpoco.
3. Fix processing of aws list-objects-v2 because I misread the syntax.
 2023-11-27 18:46:10 -07:00
Peter Hill
d07dac918c
Silence conversion warnings from malloc arguments 
Mostly just add an explicit cast when calling `malloc` and its
variants. Sometimes instead change the type of a local variable if
this would silence multiple warnings.
 2023-11-24 18:20:52 +00:00
Ward Fisher
9fe1a346ba
Merge branch 'main' into dap4ce.dmh 2023-11-16 12:22:11 -07:00
Ward Fisher
d4e906fec0
Merge pull request #2803 from seanm/UBSan-utf8 
Fixed various UBSan warnings about working with NULL pointers
 2023-11-16 12:21:08 -07:00
Ward Fisher
807c6ef3f9
Merge branch 'main' into execinfo.dmh 2023-11-15 15:54:35 -07:00
Sean McBride
23aa46fcf5 Fixed various UBSan warnings about working with NULL pointers 
Any pointer arithmetic with NULL pointers is technically UB, even if you don't end up dereferencing the pointer.
 2023-11-15 15:11:56 -05:00
Ward Fisher
99f22954c5
Merge pull request #2787 from seanm/UBSan-shift 
Fixed various UBSan warnings about invalid bit shifting
 2023-11-14 16:55:24 -07:00
Ward Fisher
9593dbfac9
Merge pull request #2790 from seanm/mmap-bsd 
Renamed mmap variable, which conflicts with mmap() function on FreeBSD
 2023-11-06 14:48:06 -07:00
Sean McBride
fb62738f72 Renamed mmap variable, which conflicts with mmap() function on FreeBSD 
This fixes compiler errors on FreeBSD 14.
 2023-11-06 16:05:24 -05:00
Dennis Heimbigner
adea80f376 Remove the execinfo capability 
re: Issue https://github.com/Unidata/netcdf-c/issues/2766

This attempt to programmatically dump stack never worked,
so it is time to kill it off.
 2023-11-04 21:32:33 -06:00
Dennis Heimbigner
87497d79cf update 2023-11-04 16:08:59 -06:00
Sean McBride
1162f64d2a Fixed various UBSan warnings about invalid bit shifting 
Just made sure to use unsigned, so that a bit does not get shifted into a sign bit.
 2023-11-02 11:11:18 -04:00