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509 Commits

Author SHA1 Message Date
dmh
859f105005 merge-squash 2015-08-15 16:26:35 -06:00
Russ Rew
0687dfe5a2 Cleanup clang warnings. 2015-08-02 17:22:50 -06:00
Ward Fisher
3a792b1fb2 Remove the [NCF-332] temp file on failure. 2015-05-29 10:23:24 -06:00
Ward Fisher
ea8f1d9027 Fleshed out [NCF-332] test to check all little-endian variable types supported, and also added some true-negative/expected failure tests. Next up is regression testing and then merging into master. 2015-05-29 09:49:20 -06:00
Ward Fisher
d5d1efbcdb Refactoring and expanding [NCF-332] test. 2015-05-29 09:22:38 -06:00
Ward Fisher
0ed84b406b Fleshed out a test that *should* start passing, once we've fixed issue [NCF-332] 2015-05-28 17:21:01 -06:00
Ward Fisher
64e0d2a44e Added a new test for h4 endianness. [NCF332] 2015-05-28 17:13:15 -06:00
Ward Fisher
4fecd37ba7 Refactored tst_h_endians to tst_h5_endians, so that we can differentiate between hdf5 and hdf4 endian tests. 2015-05-28 16:29:49 -06:00
Ward Fisher
c9d7c88f63 Added a stanza for 'NC_DOUBLE' into the recently-added endians test. 2015-05-18 10:55:17 -06:00
Ward Fisher
5eb90c3a66 Cleaned up an unnecessary test, added refactored nc4 test to autotools. 2015-05-15 15:31:38 -06:00
Ward Fisher
9d98aab40a Refactored test. 2015-05-15 15:29:29 -06:00
Ward Fisher
99ef1624bc Regarding [NCF-331], the issues appears to have been in nc4file.c:get_type_info2(). The call to H5Tget_order() was only happening for H5T_Float. According to the documentation, this works for all datatypes as of hdf5 1.8.6. This tentatively fixes the bug reported, but additional testing (and cleanup from debugging) is needed. 2015-05-15 14:24:27 -06:00
Ward Fisher
de29c4d0a8 Tweaked tests for additional debugging. 2015-05-15 13:11:46 -06:00
Ward Fisher
999f4e5720 Additional debugging, modified the LOGGING functions somewhat. Also modified ncdump to print 'native' endianness. This may be removed before merging back into trunk. 2015-05-14 17:22:07 -06:00
Ward Fisher
fa1d61b980 Additional debugging for [NCF-331] 2015-05-12 13:52:52 -06:00
Ward Fisher
6eff077ed5 Incorporated endian test for [NCF-331] into autotools. 2015-05-12 13:00:22 -06:00
Ward Fisher
c43f9dee63 Refined test for [NCF-331]. 2015-05-11 15:58:47 -06:00
Ward Fisher
659172816b Added a new test. 2015-05-11 15:01:31 -06:00
Ward Fisher
ee3daa3267 Added a test contributed by Jeff Whitaker. See https://github.com/Unidata/netcdf-c/issues/112 or [NCF-331] for more information. 2015-05-11 14:52:16 -06:00
Russ Rew
ab18a2e17c Fix bug NCF-187 (thanks to Alexander Barth). Add test for bug fix. 2015-04-02 12:30:51 -06:00
Russ Rew
6a6e8c08a6 added test case for ncf-187, haven't added fix yet 2015-04-01 15:09:27 -06:00
Quincey Koziol
aede522766 Mark dataset attributes dirty when one is renamed. 2015-02-25 09:25:40 -06:00
Ward Fisher
261e7511cc Modified group rename shell script to work in Msys/Windows Environment. 2015-02-02 14:46:51 -07:00
Ward Fisher
2d72b7ca7f More work on getting the shell scripts working properly with cmake under MSYS. 2015-02-02 14:46:50 -07:00
Russ Rew
db83a3be4c Jira issue NCF-314, "Provide replacement for using numeric values of -k 
option on nccopy and ncgen".
 2014-12-29 13:07:28 -07:00
Russ Rew
9a60dc612f Use short "-k" codes instead of deprecated version numbers for ncgen and nccopy tests 2014-12-28 22:42:05 -07:00
Ubuntu
a33d21cf34 Merge branch 'master' into NCF-177 2014-12-15 14:27:36 +00:00
Russ Rew
eaf8ef61e0 resolved conflict 2014-12-09 13:31:20 -07:00
Russ Rew
97b49d1421 Fix (harmless) confusion between varid and dimid names 2014-12-05 12:47:45 -07:00
Quincey Koziol
86d47170ee Update with tests from ticket. 2014-12-02 08:35:36 -06:00
Quincey Koziol
5749c5178a Remove useless assignment. 2014-11-07 08:26:46 -06:00
vagrant
534d24c689 Changed test order to resolve dependency which caused an issue on centos platforms. 2014-08-29 16:30:28 -06:00
Ward Fisher
b04d49166c Fence-posted hdf4-related shell script tests on Windows. 2014-08-29 11:27:55 -06:00
Ward Fisher
b25dbcd24a Added an explicit error message string to nc_strerror for NC_ECANTEXTEND. 2014-08-18 14:24:16 -06:00
Russ Rew
a71e1acb67 Use curl instead of wget to get hdf4 files when --enable-hdf4-tests specified 2014-07-20 17:14:17 -06:00
Ward Fisher
7f812b367e Manual merge of pull request https://github.com/Unidata/netcdf-c/pull/64 contributed by nschloe. Assorted CMake improvements. 2014-06-11 15:51:31 -06:00
dmh
4de1b58df2 [NCF-272] 
There was a problem with the
distcheck testing since the test input files
are in ${src_dir} and the test is in ${build_dir}.
So modify run_chunk_hdf4 to copy as necessary.
 2014-05-31 13:54:52 -06:00
dmh
ff60798bb1 Add CMAKE for hdf4 chunking 2014-05-30 22:16:19 -06:00
dmh
b560fe1233 [NCF-272] 
It turns out that HDF4 supports chunking
(and compression). However the existing
HDF4 code does not support it.
So add HDF4 support for chunking.
Also add a test case.
 2014-05-30 22:12:05 -06:00
Quincey Koziol
435d8a03ed Account for the HDF5 library not having the MPI-POSIX VFD configured in. 2014-05-07 08:45:15 -05:00
Ward Fisher
44fae42214 Cleaned up indentation, white space in multiple CMakeLists.txt files. 2014-04-21 11:15:33 -06:00
Ward Fisher
cf7763645c Corrected an issue with tst_v2 on Windows. 2014-04-11 14:32:16 -06:00
Ward Fisher
74209d373e Corrected an issue with disabling the V2 API support in cmake-based builds. 2014-04-03 10:45:22 -06:00
Ward Fisher
874c768afb Fixed issue when running parallel tests in a CMake build, as reported in issue 38 on github. 2014-03-13 10:59:21 -06:00
Quincey Koziol
fe9e0b056d Update HDF4 support for recent datatype changes. 2014-02-25 21:05:19 -06:00
Quincey Koziol
fd981824c1 Correct handling of variablen-length sequences for attributes, plus uncomment a 
bunch of tests that stress this area of the library.

Also clean up some compiler warnings in the dispatch code.
 2014-02-14 08:07:14 -06:00
Quincey Koziol
4bfd9b27a0 Merge remote-tracking branch 'upstream/master' 
Conflicts:
	libdap2/common34.c
	oc2/ocutil.c
 2014-02-11 17:26:09 -06:00
Quincey Koziol
b2dfacbcfa Big clean up to type handling in libsrc4, which makes fill-values work 
correctly for variables with string datatype, plus a few other minor changes.
 2014-02-11 17:12:08 -06:00
Ward Fisher
8aee60dd43 Reordered HDF4 test calls in CMakeLists.txt in nc_test4 to remove an error caused by running tests out of order. 2014-02-07 09:37:17 -07:00
Ward Fisher
feaaf7e779 Added missing test script to EXTRA_DIST in makefile.am. 2014-02-06 11:32:45 -07:00
Ward Fisher
0032af978b Added INQ_FORMAT_EXTENDED-related tests to the cmake build system (based on inclusion in autotools-based builds). 2014-01-16 13:14:49 -07:00
Quincey Koziol
cd71eb525c Corrected "BAIL" macros to avoid infinite loop when logging is disabled and an 
error occurs after an "exit:" label.

Corrected a dozen Coverity errors (mainly allocation issues, along with a few
    other things):
        711711, 711802, 711803, 711905, 970825, 996123, 996124, 1025787,
        1047274, 1130013, 1130014, 1139538

Refactored internal fill-value code to correctly handle string types, and
    especially to allow NULL pointers and null strings (ie. "") to be
    distinguished.  The code now avoids partially aliasing the two together
    (which only happened on the 'write' side of things and wasn't reflected on
    the 'read' side, adding to the previous confusion).

    Probably still weak on handling fill-values of variable-length and compound
    datatypes.

Refactored the recursive metadata reads a bit more, to process HDF5 named
    datatypes and datasets immediately, avoiding chewing up memory for those
    types of objects, etc.

Finished uncommenting and updating the nc_test4/tst_fills2.c code (as I'm
    proceeding alphabetically through the nc_test4 code files).
 2013-12-29 01:12:43 -06:00
dmh
582410a407 [NCF-273]/HZY-708311 
Add a new function called nc_inq_format_extended that
returns more detailed format information (vis-a-vis
nc_inq_format) about an open dataset.

Note that the netcdf API will present the file as if it had
the format specified by nc_inq_format.  The true file
format, however, may not even be a netcdf file; it might be
DAP, HDF4, or PNETCDF, for example. This function returns
that true file type.  It also returns the effective mode for
the file.

signature: nc_inq_format_extended(int ncid, int* formatp, int* modep)
where
* ncid is the NetCDF ID from a previous call to nc_open() or
  nc_create().
* formatp is a pointer to a location for returned true format.
* modep is a pointer to a location for returned mode flags.

Refer to the actual list in the file netcdf.h to see the
currently defined set.

Also added test cases (tst_formatx*).
 2013-12-22 12:53:20 -07:00
Ward Fisher
acd3565140 Replaced a comparison of floating point variables to a difference/epsiolon test. 2013-12-17 14:30:14 -07:00
Ward Fisher
f5ec4ba7a0 Removed reference to old test file. 2013-12-16 15:22:59 -07:00
Quincey Koziol
0d42ac7e87 Switch test for nc_inq_unlimdim and nc_inq_unlimdims to use the same ordering as 
the rest of the dimension queries.  Correct error in library where types used
in sub-group variables but that were added to the file after the sub-group was
created weren't available for sub-group variables to use.  Start cleaning up
test suite and un-commenting tests that were commented out (got up to
nc_test4/tst_fills2.c, alphabetically) before running into an error in HDF5.
 2013-12-15 19:55:41 -06:00
Quincey Koziol
11e6343ae1 Correct order of unlimited dim checking in test. (Was relying on old behavior 
of backwards ordering)
 2013-12-14 10:08:01 -06:00
Ward Fisher
b43955ab49 Added test contributed by Jeff Whitaker. 2013-12-10 15:50:20 -07:00
Ward Fisher
6d26b8c27c Fixed an issue with make distclean where a test file was not being deleted. 2013-12-06 11:33:37 -07:00
Quincey Koziol
5ccb8a24b5 Merge branch 'master' into ncf-177 2013-11-30 23:40:26 -06:00
Quincey Koziol
e1fc13b215 Many changes to address NCF-177 (renaming dimensions and variables). Also 
many cleanups to fix compiler warnings, streamline iteration over objects
in HDF5 file when opening the file, and generally straightening out the code
to be cleaner and simpler.

Tested on Mac OS/X with gcc 4.8 and OpenMPI (which uses clang).
 2013-11-30 23:20:28 -06:00
Russ Rew
66434cdb8a Fix test for proper error return when invalid coordinate specified for 
nc_get_var1_ushaort call.
 2013-11-26 13:33:18 -07:00
Ward Fisher
b6e4715104 Added fixes to CMake-based system, when building pnetcdf. 2013-08-26 13:50:27 -06:00
Quincey Koziol
3cdce9e3af Correct error when a parallel application writes different amounts of data to 
an unlimited-dimension variable, and different processes don't agree on the
whether to extend the underlying HDF5 dataset, or don't agree on the amount
to extend the dataset.
 2013-08-18 20:45:17 -05:00
Ward Fisher
909f569de0 Changed argument list of nc_rename_grp to match definition of nc_rename_grp, 
changed invocation of nc_rename_grp in renamegroup.c.
 2013-07-22 17:27:43 +00:00
Ward Fisher
0401fafb3b Changed argument list of nc_rename_grp to match definition of nc_rename_grp, 
changed invocation of nc_rename_grp in renamegroup.c.
 2013-07-22 17:04:54 +00:00
Ward Fisher
cbb032b19c Modified how renamegroup executable is built so that 
it can be run in CMake-based builds.
 2013-07-22 16:55:59 +00:00
Russ Rew
a18b6eb42a Remove .exe suffix from executable invocation in shell test script. 2013-07-22 14:43:10 +00:00
Dennis Heimbigner
bb77390311 Set executable bit on run_grp_rename.sh 2013-07-21 17:09:49 +00:00
Dennis Heimbigner
05369372f7 Debugged previously added 
code to support group rename.
Also added a simple test case.
 2013-07-21 01:08:39 +00:00
Russ Rew
7f9ff06665 Modified to run the nc_test4 program inadvertently omitted file from the NCF-56 fix. 2013-07-14 18:34:01 +00:00
Russ Rew
fa3f84afbc Neglected to add this, due to confusion with file of same name in ncdump 2013-07-14 16:16:56 +00:00
Russ Rew
167c2355c8 Fix CMakeLists to remove tst_h_scalar test from nc_test4/, since already in ncdump/ 2013-07-10 22:53:56 +00:00
Dennis Heimbigner
7dce1d00f3 add ref to tst_h_scalar 2013-07-10 21:17:36 +00:00
Russ Rew
e4f9350c23 Quincey's fixes for NCF-56, "netcdf-4 can't read HDF5 scalar atts". 
Also added ability capability for netCDF-4 to write and read NIL
values for string type attributes and variables, so these can be read
if used in HDF5 files.

Include are additions to CMakeLists files to reflect new tests.
 2013-07-10 20:09:31 +00:00
Russ Rew
6cd8fca60d Quincey's fixes for NCF-250, netCDF-4 parallel independent access with 
unlimited dimension hanging.  Extending the size of an unlimited
dimension in HDF5 must be a collective operation, so now an error is
returned if trying to extend in independent access mode.

Quincey's bug fixes for parallel build portability, particularly
OpenMPI on MacOS-X.
 2013-07-08 21:31:13 +00:00
Ward Fisher
33d3d06971 Added initial 'make dist', 'make distcheck' support to 
CMake-based builds.
 2013-06-03 16:42:04 +00:00
Dennis Heimbigner
c583f91992 merge with trunk and fix conflicts 2013-05-10 17:04:28 +00:00
Russ Rew
6ebc98d254 Fix NCF-247 bug, and add test for bug fix. 2013-04-22 22:34:21 +00:00
Ward Fisher
9f187a1484 Merged the fix for NCF-29 from Quincy into the trunk. 2013-03-26 18:57:26 +00:00
Dennis Heimbigner
c659633d2e merge from trunk 2013-03-26 16:45:02 +00:00
Russ Rew
b36dc5b5fb Fix NCF-244 bug for case where using different order for defining 
coordinate variables and their associated dimensions occurs in any
subgroup, rather than just the root group.  If this occurs, the
variable attribute "_Netcdf4Dimid" is created for every dimension
scale.

Also add a test for this bug fix in tst_dims3.nc, based on Pedro
Vicente's demo.
 2013-03-26 15:14:19 +00:00
Dennis Heimbigner
dea3c726c8 merge trunk into this branch 2013-03-15 20:31:07 +00:00
Dennis Heimbigner
9eaac2a595 Apply Wei-Keng's fix 
for JIRA issue NCF-241.
This is only temporary
until I can make pnetcdf
operate as a separate dispatch table.

Also, fix nc_test4/tst_pnetcdf
to open with nc_open_par;
this is necessary because a pnetcdf
created file cannot be opened
as a netcdf classic file.
 2013-03-13 17:34:47 +00:00
Ward Fisher
03fb6a2ac2 Merging latest changes from netcdf-cmake branch. 2013-03-11 21:13:51 +00:00
Russ Rew
bf038bceb8 Add test for bug NCF-234 fix 2013-03-10 23:57:06 +00:00
Koziol
0f29dd60c0 Description: 
Fix Jira issue NCF-29 (https://bugtracking.unidata.ucar.edu/browse/NCF-29):
making the netCDF-4 library ignore HDF5 datasets and attributes which have
datatypes (such as references) that it doesn't understand.

Tested on:
    Mac OSX/64 10.8.2 (amazon) w/--enable-netcdf-4 --enable-extra-tests --enable-extra-example-tests
        --disable-shared --enable-logging
 2013-03-01 08:10:28 +00:00
Ward Fisher
0444a6c711 Fixed a couple of tests on Windows, 
Fixed some compile errors on Windows.
 2013-02-21 23:56:15 +00:00
Ward Fisher
ddf3c31bb0 Corrected a handful of syntax issues in CMake config files, 
probably introduced more.  

Added CMake-related files to Makefile.am files for inclusion
when creating a distribution package.
 2013-02-20 23:28:28 +00:00
Dennis Heimbigner
b0b6c77a3e 1. corrected the nc_get_varm/put_varm documentation 
to indicate that they only work for atomic types,
   not user defined types.

2. modified NCDEFAULT_{get/put}_vars to no longer use
   nc_get/put_varm. They now directly use nc_get/put_vara
   directly. This means that nc_get/put_vars now work
   properly for user defined types as well as atomic types.

3. Added test cases for get_vars/put_vars with a
   user defined type. Tests placed into
   nc_test/tst_compounds.c
 2013-02-17 23:42:15 +00:00
Ward Fisher
51848614c3 Corrected parallel support in CMake, including 
library checks and parallel IO tests.  Updated 
CMake-related documentation.
 2013-02-12 22:22:54 +00:00
Russ Rew
ba1a494579 Fix bug NCF-226 2013-02-11 18:04:03 +00:00
Ward Fisher
8d6bfcd534 Added new tests to CMake test system. 2013-02-06 23:09:19 +00:00
Russ Rew
5c9368a7fa Fix bug NCF-222, scalar non-coordinate variables with same name as dimensions 2013-02-04 15:48:47 +00:00
Russ Rew
fab1c8675c Fix NCF-217, a bug depending on order of calls to netCDF-4 functions 2013-02-01 17:38:26 +00:00
Russ Rew
3ef3b35a94 Refactor to share functions between ncdump and nccopy. Merge nccopy 
enhancements, based on contributed code from Martin van Driel, to
support -v, -g, -V, and -G options for selecting groups and variables
in output.  Fix all clang warnings from nccopy and ncdump sources, as
well as a few other cleanup changes to testing code.
 2013-01-23 17:45:29 +00:00
Dennis Heimbigner
39bed98c0b fix pnetcdf problems reported by russ 2013-01-17 18:43:34 +00:00
Ward Fisher
91188cea7a Merging CMake branch into trunk. Changes include: 
CMake related changes in CMakeLists.txt files,
cmake_config.h.in. Other changes relate to 
Windows-specific issues, and changes made
when regenerating generated source files.
 2013-01-15 22:43:09 +00:00
Russ Rew
592a120a55 Fixed bug NCF-206 (Fix strided access for NC_STRING type). Verified 
fix with new test for strided access for NC_STRING type.
 2012-11-19 17:20:53 +00:00
Ward Fisher
6504c2b093 2012-09-14 21:53:08 +00:00
Ward Fisher
c271c81ac4 2012-09-14 21:35:25 +00:00
Ward Fisher
e55d002dbc Merged Dennis' changes from trunk. 2012-09-06 21:15:37 +00:00
Dennis Heimbigner
5ca78309cc The effect of this change is to make the struct NC structure 
contain as little file-type specific info as possible.  It
modifies especially libsrc so that all of the netcdf-3 data
that used to be in struct NC is now kept in a separate chunk
of data pointed to by the struct NC. This makes all of
current protocols consistent: netcdf-3, netcdf-4, and dap.
 2012-09-06 19:44:03 +00:00
Ward Fisher
e8453be1e5 Merged from trunk into branch 2012-08-20 18:30:04 +00:00
Russ Rew
8d53da4826 Fixed bug "adding a bad _FillValue" bug (NCF-190). Fixed minor bugs 
reported by static analysis, including memory leak in ncdump, missing
size_t cast for chunk cache.  Fixed various doc problems, including
byte vs. char issues, missing NC_UBYTE in type list, needed link to
"Building with Windows" page.
 2012-08-16 18:31:48 +00:00
Ward Fisher
14619ec4c4 2012-08-09 18:40:41 +00:00
Ward Fisher
0607b62375 Added coverage test flags to CMakeLists.txt files. 2012-08-09 17:07:41 +00:00
Ward Fisher
0ee2fba307 Expanded ctest functionality. 2012-08-07 20:21:44 +00:00
Ward Fisher
02828e917a Integrated more tests, added additional CMake functionality 2012-08-06 23:07:40 +00:00
Dennis Heimbigner
b083b9e758 fix == in shell scripts 2012-07-17 20:13:17 +00:00
Dennis Heimbigner
22981c31cf remove dap tests from anywhere but ncdap_test 2012-06-21 22:00:49 +00:00
Russ Rew
79cde861ac Delete obsolete libdiskless directory, replaced by new diskless 
implementation.  Deleted obsolete win32, soon to be replaced by Ward's
Windows 32- and 64-bit fixes for building with MSYS/MinGW.  Made
cosmetic cleanup to output of "make check" to make it easier for users
to interpret.  Fixed bug NCF-175: ncdump -t incorrectly interpreting
units attribute (such as "days") without a base time (such as "since
2007-01-01") as a time unit.

Changed name to 4.2.1-beta.
 2012-06-12 21:50:02 +00:00
Russ Rew
dbaf62f5e6 Updated some links in Doxygen version of user guide. Fixed some 
range_error checks in netCDF-4 type conversion code.  Made netCDF
attribute tests with type conversion more comprehensive and stringent,
fixing bugs identified with better tests.  Changed a test in
nc_test/tst_atts.c to use netCDF-3 file instead of netCDF-4 file,
because that directory is supposed to be for tests that work with
--disable-netcdf-4.  Added test demonstrating NCF-171 bug on 32-bit
platforms, only run when configured with --enable-extra-tests.
 2012-05-24 16:29:22 +00:00
Dennis Heimbigner
4f68d6c5f8 win32/mingw fixes 2012-05-15 03:13:08 +00:00
Russ Rew
4f6b3a04c4 Fix ncdump bug (NCF-169), not escaping characters special to CDL in enumeration labels. 2012-05-07 12:58:22 +00:00
Dennis Heimbigner
e42d7d7f61 fix bug in opaque parsing 2012-05-05 22:31:24 +00:00
Russ Rew
c6f399c731 Fix non-portable test that depends on nonstandardized floating-point format using e+08, not e+008. Fixes for some problems reported in scan-build static analysis. 2012-04-23 23:59:24 +00:00
Dennis Heimbigner
00e50f5a44 1. changed from using port 8080 to 8081 for motherlode 
2. Fixed Ward's IGNORE problem with oc
3. Mmap support now works.
4. Fix an uninitialized variable pointed out by Russ in dnclog.c
 2012-04-22 20:34:21 +00:00
Russ Rew
fa3fbbcc92 Fixes for NCF-150, bugs in libsrc4 with handling strings in non-netCDF-4 HDF5 files. Added new test in nc_test4 to verify fixes. 2012-04-20 15:42:55 +00:00
Dennis Heimbigner
353b7ebf53 fix bug in memio.c realloc code 2012-04-12 02:06:28 +00:00
Dennis Heimbigner
a169a8383c fixed type bug in tst_createfiles.c: int[]->size_t[] 2012-03-31 19:11:33 +00:00
Dennis Heimbigner
c417a58747 add some debugging help to fix snapshot error 2012-03-30 21:51:31 +00:00
Dennis Heimbigner
28bd09236b move single use macro to using program 2012-03-28 16:19:16 +00:00
Dennis Heimbigner
7e27052f87 - Implemented diskless files for both netcdf classic and extended. 
The in-memory files can be made persistent if nc_create is called with
  NC_DISKLESS|NC_WRITE flags set. Initial test case also included.
- Modified ncio mechanism to support
  multiple ncio packages; this is so we
  can have posixio and memio operating
  at the same time.
- cleanup up a bunch of lint issues (unused variables, etc).
 2012-03-26 01:34:32 +00:00
Dennis Heimbigner
99eef24bc2 - Fix NCF-158 to modify ncgen flag defaults. 
- Fix NCF-157 to modify DAP code to support
  partial variable retrieval.
- Fix of NCF-154 to solve problem of ncgen
  improperly processing data lists for variables
  of size greater than 2**18 bytes.
- Fix ncgen processing of char variables that have
  multiple unlimited dimensions.
- Partly fix Jira issue: NCF-145 (vlen issues).
- Benchmark program nc_test4/tst_ar4_*) requires arguments
  and should only be invoked inside a shell
  script; fixed so that they terminate cleanly
  if invoked with no arguments.
- Fix the Doxygen processing so it will work
  with make distcheck.
- Begin switchover to using an alternative to ncio.
- Begin support for in-memory (diskless) files.
 2012-03-14 23:26:48 +00:00
Russ Rew
118ebceeef remove temporary test 2012-02-21 12:53:53 +00:00
Dennis Heimbigner
7e63849e03 added some notes about attributes 2012-02-15 22:33:28 +00:00
Russ Rew
091d46081f remove verbose output from chunk tests 2012-02-05 21:34:14 +00:00
Russ Rew
e39dc1ed39 Revert libtool version to 7.1.1. Disable libdiskless. 2012-01-12 23:27:30 +00:00
Dennis Heimbigner
a4817c7888 make knmi tests run properly 2011-12-15 20:24:54 +00:00
Dennis Heimbigner
efd9808b0a completely rewritten constraint system 2011-11-14 04:20:19 +00:00
Dennis Heimbigner
d10a2605ce moved librpc/ from major branch to trunk 2011-10-23 20:17:56 +00:00
Ed Hartnett
31d81f85ab enhanced knmi performance testing 2011-10-05 13:43:20 +00:00
Ed Hartnett
7b47adf3a1 removed executable permissions from all code files 2011-10-04 16:05:11 +00:00
Ed Hartnett
8945e92708 fixed some missing config.h problems 2011-09-26 10:14:55 +00:00
Dennis Heimbigner
16dee702b7 fix NCF-120 2011-09-15 16:57:16 +00:00
Ed Hartnett
b395c3f03f scalar varaibles working for diskless files 2011-08-26 11:17:55 +00:00
Ed Hartnett
fd324b3b88 fixed test that caused valgrind to complain 2011-08-25 13:46:34 +00:00
Ed Hartnett
fde5e75730 removed diskless files for non-netcdf-4 builds 2011-08-23 15:07:24 +00:00
Ed Hartnett
d58c18c623 added diskless files API, subsetting not working, classic model only 2011-08-16 21:04:33 +00:00
Ed Hartnett
cd9841c6ae added test for netCDF-4 performance 2011-08-15 13:27:10 +00:00
Ed Hartnett
7a2774c8d1 took out repeated definitions of timeval_subtract function 2011-08-15 11:37:45 +00:00
Ed Hartnett
6a97ad3f08 fixed some other def_var_chunking calls 2011-08-12 14:34:37 +00:00
Ed Hartnett
f81628eeb1 fixed def_var_chunking call bug 2011-08-12 14:24:03 +00:00
Ed Hartnett
5ce7dd290a added forgotten file 2011-07-20 21:32:41 +00:00
Ed Hartnett
728177f25d added beginning of test contributed by KNMI 2011-07-20 19:44:27 +00:00
Ed Hartnett
069574d842 make new parallel I/O flag requirement work with pnetcdf library 2011-06-03 13:58:34 +00:00
Ed Hartnett
c199d81417 fixed fortran parallel I/O flag bug 2011-06-02 22:46:15 +00:00
Ed Hartnett
414b6fefb2 added F77 parallel test and clean up a little 2011-05-23 15:34:42 +00:00
Ed Hartnett
d469f39e3c workaround for HDF5 dimscale issue 2011-05-19 19:22:43 +00:00
Ed Hartnett
d1a6aa38d8 found HDF5 dimscale bug 2011-05-19 17:36:47 +00:00
Ed Hartnett
25ec2b9a54 found HDF5 dimscale bug 2011-05-19 17:36:25 +00:00
Ed Hartnett
e2685a1475 changes to remove EXTERN_LDFLAG from build, also to fix netCDF-4 sync bug 2011-05-17 19:14:35 +00:00
Ed Hartnett
2f4cf5382e took out ldflags in Makefile.am files 2011-05-11 17:09:12 +00:00
Ed Hartnett
841c9c35b0 reduce load of parallel testing 2011-05-02 14:12:32 +00:00
Ed Hartnett
74c1e894b3 fixed use of szip library 2011-04-29 18:19:12 +00:00
Ed Hartnett
687beb0261 added forgotten test file 2011-03-21 16:00:55 +00:00
Ed Hartnett
0259975e26 changes in response to user feedback to rc1, plus cleaned up H5 test dependancy 2011-03-21 15:45:17 +00:00
Ed Hartnett
e5c8e924e2 more tests for Jeff W. 2011-03-21 09:47:37 +00:00
Ed Hartnett
965a3aac70 minor refactor of the build system to work better for cross-compiling 2011-03-15 10:19:08 +00:00
Ed Hartnett
7d97bbadf9 fixed missing benchmarking shell script in distribution 2011-02-24 10:59:22 +00:00
Ed Hartnett
1d810b5034 fixed some hdf4 configure settings, added more hdf4 tests 2011-01-28 18:01:37 +00:00
Ed Hartnett
2ebb1cbafc fixed problems with parallel I/O of classic files with pnetcdf library 2011-01-28 12:45:52 +00:00
Dennis Heimbigner
209742ebec Fixed dap memory leaks 2010-12-17 23:54:09 +00:00
Russ Rew
7fb25a2a5a Jeff Whitaker's nc-config change. Cosmetic change to benchmark output. 2010-11-16 23:08:42 +00:00
Russ Rew
5e1967e466 Put gettimeofday(&start_time, ...) call in the right place for meaningful timings. 2010-11-12 21:18:11 +00:00
Ed Hartnett
e22ff1d34a added timing test of HDF5 many attributes creation 2010-11-12 20:12:32 +00:00
Ed Hartnett
35b0c5422d got benchmark build working agian 2010-11-12 18:09:12 +00:00
Russ Rew
2ba3602188 remove writing attributes, since already tested in bm_many_atts benchmark 2010-11-12 05:36:24 +00:00
Russ Rew
171f42da85 Documentation fixes for udunits, cxx4. New benchmark programs for a large number of objects (groups, variables, attributes). 2010-11-12 03:56:26 +00:00
Ed Hartnett
c2b967be53 changes to make parallel tests script output 2010-10-20 17:20:28 +00:00
Ed Hartnett
211225da2b fixed parallel test by removing BAIL macro 2010-10-15 13:21:43 +00:00
Ed Hartnett
a658960034 added more valgrind testing 2010-10-13 22:53:25 +00:00
Ed Hartnett
5923f92119 adding missing include in parallel I/O test program 2010-10-13 15:05:00 +00:00
Ed Hartnett
75d38d4308 fixed for missing header file 2010-10-08 20:14:19 +00:00
Ed Hartnett
64d614fd87 added missing file, fixed includes, removed unneeded header file 2010-10-08 20:08:24 +00:00
Ed Hartnett
65c54d88f5 fixed some AIX portability issues, added tests, especially valgrind tests 2010-10-08 18:54:53 +00:00
Dennis Heimbigner
80e693a444 enforce --disable-dap-remote-tests 2010-09-02 19:34:46 +00:00
Ed Hartnett
a943d702dd whoops, forgot to add this file 2010-08-23 13:21:12 +00:00
Ed Hartnett
cd6468ae14 cleaned up some memory problems, added nc_inq_path for classic and netcdf-4 files 2010-08-20 19:50:59 +00:00
Ed Hartnett
a27fd4390c added opendap memory test 2010-08-20 17:20:32 +00:00
Ed Hartnett
469731fd88 inq path works for netcdf-4 2010-08-19 18:15:48 +00:00
Ed Hartnett
1aedb82327 fixed some memory problems, more progress towards nc_inq_path 2010-08-19 17:37:29 +00:00
Ed Hartnett
cdf3d497fd turned off failed test 2010-08-18 15:43:37 +00:00
Ed Hartnett
38383a8b4c forgotten file added 2010-08-18 15:32:21 +00:00
Ed Hartnett
a0e1b037e5 added nc_inq_path in dispatch tables 2010-08-18 15:11:17 +00:00
Ed Hartnett
96970bba9e fixed HDF4 problem with allocated metadata storage 2010-07-06 14:56:28 +00:00
Ed Hartnett
0e855e0dc5 more changes to make netcdf-4 use less memory per variable 2010-07-01 11:39:34 +00:00
Ed Hartnett
6de0e1698e fixed parallel make problem in oc directory, fixed extra-test problem 2010-06-30 14:55:57 +00:00
Ed Hartnett
e8218ab23b moved header files to include dir, refactored libdispatch, cleaned up Makefile.am files 2010-06-29 14:11:48 +00:00
Ed Hartnett
f0a72cbefb fixed broken classic-only build 2010-06-28 17:17:43 +00:00
Russ Rew
ef66f0cc06 Merged latest trunk changes to my branch. 2010-06-24 22:07:01 +00:00
Ed Hartnett
2ddea973a3 fixed valgrind tests some more 2010-06-24 08:52:03 +00:00
Russ Rew
07967fba22 Merged latest trunk changes to my branch. 2010-06-24 05:23:23 +00:00
Ed Hartnett
f6447ee94c fixed extra-test libsrc4/tst_h_vl2 problem and valgrind test problems 2010-06-23 13:57:33 +00:00
Ed Hartnett
204685b257 got valgrind tests to pass 2010-06-23 13:20:39 +00:00
Russ Rew
8a013d4f51 Changed calls in tests from deprecated _ubyte functions to equivalent 
_uchar functions.
 2010-06-22 22:41:04 +00:00
Ed Hartnett
ad5bb5a1b4 fixed tst_v2 in nc_test4/Makefile.am 2010-06-22 15:04:06 +00:00
Ed Hartnett
fc4a4ea189 finished breaking up netcdf.m4 into c files. 2010-06-22 13:25:14 +00:00
Ed Hartnett
e5512f4e56 removed v2 test in nc_test4 when --enable-c-only is used 2010-06-22 10:18:15 +00:00
Ed Hartnett
bb57cf2e4b moved functions out of m4 into c files in libdispatch/netcdf.m4 2010-06-18 14:01:51 +00:00
Ed Hartnett
7a31e82ec3 cleaned up test files better 2010-06-15 16:05:30 +00:00
Ed Hartnett
0b54b49991 moved some tests which used v2 API from libsrc4 to nc_test4, to allow the library to be built before the tests 2010-06-15 15:24:28 +00:00
Ed Hartnett
45538c2613 got extra-tests working 2010-06-11 17:07:34 +00:00
Ed Hartnett
4496123ff7 moved tests t_nc and t_type from libsrc to nc_test and nc_test4 to simplify build 2010-06-10 21:10:50 +00:00
Ed Hartnett
57d743dddb fixed build problems for libcf/gridspec, pnetcdf, and hdf4 2010-06-10 17:18:48 +00:00
Ed Hartnett
bb0035c95d fixed Makefile.am includes to find new netcdf.h location 2010-06-07 15:40:31 +00:00
Ed Hartnett
92ccf1c5fa moved headers to include directory 2010-06-03 20:22:55 +00:00
Ed Hartnett
18f4bca367 moving to trunk subdir 2010-06-03 13:24:43 +00:00