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Author SHA1 Message Date
Ward Fisher
81303c3615 Merge branch 'v4.7.3-wellspring.wif' of github.com:Unidata/netcdf-c into v4.7.3-wellspring.wif 2019-11-19 14:36:25 -07:00
Ward Fisher
f4c77f3dc9 Merge branch 'ejh_fix_benchmarks' of https://github.com/NOAA-GSD/netcdf-c into v4.7.3-wellspring.wif 2019-11-19 14:11:11 -07:00
Ward Fisher
309110c1e8 Merge branch 'ejh_release_notes' of https://github.com/NOAA-GSD/netcdf-c into v4.7.3-wellspring.wif 2019-11-19 14:07:07 -07:00
Ward Fisher
b6b66cac28 Moved Dispatch Version up to General stanza in libnetcdf.settings 2019-11-19 14:01:27 -07:00
Edward Hartnett
1ba34115c2 updated release notes more 2019-11-19 11:40:04 -07:00
Edward Hartnett
b439490995 fixed nc_perf Makefile.am to include benchmark scripts in EXTRA_DIST 2019-11-19 09:21:00 -07:00
Ward Fisher
e4efdd4cfb Bumped version to next development version. 2019-11-18 14:35:01 -07:00
Ward Fisher
970436b9b9 Bumped revision in accordance with guidelines in preparation for 4.7.3 release. 2019-11-18 14:32:47 -07:00
Ward Fisher
a268e6d69f Ctest security stance. 2019-11-18 12:07:01 -07:00
Ward Fisher
7cbbc32dad Adding new security stance to cdash instance. 2019-11-18 10:58:44 -07:00
edwardhartnett
c26b1f5042 updated RELEASE_NOTES with recent PRs that have been merged 2019-11-18 06:46:43 -07:00
Ward Fisher
af8f9ad2cf
Merge pull request #1523 from NetCDF-World-Domination-Council/ejh_udf 
User-defined formats must come first in NC_infermodel, plus test
 2019-11-15 16:40:07 -07:00
Ward Fisher
e4003be502
Merge pull request #1515 from NetCDF-World-Domination-Council/ejh_att_docs 
update for attribute documentation
 2019-11-15 16:39:46 -07:00
Ward Fisher
788d20df59
Merge pull request #1531 from NetCDF-World-Domination-Council/ejh_update_netcdf_meta 
Add a dispatch version number to netcdf_meta.h and libnetcdf.settings, in case we decide to change dispatch table in future
 2019-11-15 16:38:54 -07:00
Ward Fisher
5818facc07
Merge pull request #1529 from NetCDF-World-Domination-Council/ejh_fix_header 
fixed lack of boilerplate for C++ compilers in header file netcdf_dispatch.h
 2019-11-15 16:04:08 -07:00
Ward Fisher
923d4ccbff
Merge pull request #1530 from NetCDF-World-Domination-Council/ejh_endianness 
now testing that endianness can only be set on atomic ints and floats
 2019-11-15 15:27:35 -07:00
Ward Fisher
18b0f3cf2e
Merge pull request #1528 from NetCDF-World-Domination-Council/ejh_unlim_dim_var_same_name 
Fix for subtle error involving var and unlimited dim of the same name, but unrelated, in netCDF-4
 2019-11-15 15:21:41 -07:00
edwardhartnett
c1989b738e fixed setting of NC_DISPATCH_VERSION in cmake build 2019-11-15 14:57:07 -07:00
edwardhartnett
965da1de01 now testing that endianness can only be set on atomic ints and floats 2019-11-15 11:10:10 -07:00
edwardhartnett
a754408985 getting dispatch version working in netcdf_meta.h and libnetcdf.settings 2019-11-15 10:13:44 -07:00
edwardhartnett
a0f984f997 added dispatch version to netcdf_meta.h and libnetcdf.settings 2019-11-15 10:06:46 -07:00
edwardhartnett
559e933123 fixed header file 2019-11-15 09:39:00 -07:00
edwardhartnett
b844f8f8f6 more testing 2019-11-15 09:26:37 -07:00
edwardhartnett
35e210ac29 test cleanup 2019-11-15 09:21:54 -07:00
edwardhartnett
0017f3e069 test cleanup 2019-11-15 09:21:11 -07:00
edwardhartnett
7f41db9cb3 test cleanup 2019-11-15 09:20:26 -07:00
edwardhartnett
8083b3596e fixed problem of unlim dim and var sharing the same name but not being related 2019-11-15 09:18:42 -07:00
Ward Fisher
1a6351dab2
Merge pull request #1521 from ckhroulev/netcdf4-repeated-attribute-modification 
Improve the fix for #350 included in #1119
 2019-11-14 17:01:09 -07:00
Ward Fisher
2462cda15e
Merge pull request #1525 from NetCDF-World-Domination-Council/ejh_anon_dims 
If HDF5 dataset has multiple anonymous dimensions of the same size, assume they are different dimensions
 2019-11-14 16:58:24 -07:00
Ward Fisher
99b78fb9e5
Merge pull request #1526 from NetCDF-World-Domination-Council/ejh_commented_test 
cleaned up test handling of strings
 2019-11-14 16:08:31 -07:00
Ward Fisher
505e99a875
Merge pull request #1527 from ckhroulev/NCDISPATCH_initialize_indexing 
Fix NC_coord_zero indexing in NCDISPATCH_initialize()
 2019-11-14 15:33:32 -07:00
Constantine Khrulev
91d3a89bdd Fix NC_coord_zero indexing in NCDISPATCH_initialize() 
Fixes #1518.
 2019-11-14 08:26:33 -09:00
edwardhartnett
d0b069cf70 cleaned up test handling of strings 2019-11-14 09:39:10 -07:00
edwardhartnett
73ed8525db updated tutorial 2019-11-14 08:14:53 -07:00
edwardhartnett
af7185295d modified release notes 2019-11-14 07:25:40 -07:00
edwardhartnett
3e45fa1497 another test for two anon dimensions of same size used in same HDF5 var 2019-11-14 07:23:09 -07:00
edwardhartnett
d73611de73 now handle two anon dimensions of same size used in same HDF5 var 2019-11-14 06:54:22 -07:00
edwardhartnett
6b9248cef8 adding test 2019-11-14 06:09:45 -07:00
edwardhartnett
cebe84157b adding test for anonymous dims in HDF5 file 2019-11-13 12:51:34 -07:00
edwardhartnett
b9f57b2b5f now UDF mode flags take priority over NC_NETCDF4 2019-11-13 12:13:33 -07:00
Constantine Khrulev
bb45db457e Add regression tests modifying attributes 2^16 times 
This commit adds three new tests:

- a test documenting the limitation originally reported in #350 (in
  general modifying an attribute about 2^16 times makes it impossible
  to modify this file in ways requiring nc_redef() and nc_enddef() calls).
- a test ensuring that a scalar attribute can be modified 2^16 times
  as long as its type and size remain the same
- a test ensuring that a text attribute can be modified 2^16 times as
  long as its size remains the same

This version uses the nc_redef(), nc_put_att_...(), nc_enddef()
sequence. One could also use nc_open(), nc_put_att_...(), nc_close()
but that would make these tests significantly slower.
 2019-11-13 10:08:31 -09:00
edwardhartnett
0bbe91e438 udf must take priority in NC_infermodel 2019-11-13 12:07:33 -07:00
Constantine Khrulev
6abbf8d429 Whitespace changes 2019-11-13 10:07:10 -09:00
Constantine Khrulev
098f2c1056 Modify the condition used to check if an attribute can be re-used 
This should make the code a bit cleaner.
 2019-11-13 08:38:12 -09:00
Constantine Khrulev
dd181deca9 Improve the fix for #350 included in #1119 
1) We have to use H5Tequal() to compare HDF5 type IDs.
2) When checking if we can re-use an NC_CHAR attribute it is enough to
   compare data types (H5Tequal() takes care of the size comparison).
3) This commit adds missing code (reuse_att was set but not used).

Now an attribute in a NetCDF-4 file can be modified as many times as
necessary, as long its type and length remain the same.

Modifications changing either type or length of an attribute require
deleting and re-creating an attribute which increments the attribute
order creation index. Once this index reaches 65535 all attribute
modifications (for a particular group or variable) will fail.

For reference:

Issue 350 title: NetCDF-4 limits the number of times an attribute can
be modified

Pull request 1119 title: Fix checking for HDF5 max dims, no longer
re-create atts if not needed, confirm behavior for HDF5 cyclical
files, allow user to set mpiexec
 2019-11-12 21:45:47 -09:00
edwardhartnett
c76dae1c5d added anchors for reading_attributes and writing_attributes, and refs to them, also changed order of files in Doxygen.in 2019-11-08 05:19:51 -07:00
edwardhartnett
09fe16c847 cleanup 2019-11-08 04:47:57 -07:00
edwardhartnett
8b2630913a adding doxygen docs for every att function 2019-11-08 04:45:45 -07:00
Ward Fisher
108e938b2f
Merge pull request #1514 from turingeret/master 
Changes to make it possible to nest this project inside of another CMake project.
 2019-11-07 17:30:57 -07:00
Turing Eret
b633ea97fd Reverted changes to C files. Can't change them as that messes with the 
other configuration paths. Tweaked CMakeLists.txt to set the TOPSRCDIR
to the netcdf root.
 2019-11-07 15:46:50 -07:00