Commit Graph

14 Commits

Author SHA1 Message Date
Ward Fisher
c776039eba Updated call to NC4_read_provenance. 2019-04-18 10:53:16 -06:00
Dennis Heimbigner
88a7a1753c Simplify libhdf5/nc5info.c to move to lazy parsing
re: https://github.com/Unidata/netcdf-c/issues/1352

When nc4info.c encounters an _NCProperties attribute
with a version number it does not recognize, it does not
show it correctly.

Solution chosen is to arrange so that accessing the attribute
returns the raw value of the Attribute from the file. This way,
even if the version is unrecognized, it will return something
usable.

The changes were primarily to never attempt to parse the value
of _NCProperties until actually required. Which since they
are currently not used means that parsing never occurs.

Also modified ncdump/tst_fileinfo.sh to include some extra testing

I tested the original failure by changing the value of NCPROPS to 3.
However, there is no way to test this at build time.

Misc. Changes
* Inlined the provenance info in the NC_FILE_INFO_T structure
* Centralized stuff from elsewhere into include/nc_provenance.h

Misc. Unrelated Changes
* Removed/turned off some misc debug output left on by accident
* Fix CPPFLAGS name error in libhdf5/Makefile.am
2019-03-09 20:35:57 -07:00
Dennis Heimbigner
0c59e13bf7 Master merge, conflict resolution, cleanup 2019-02-24 16:54:13 -07:00
Dennis Heimbigner
bf2746b8ea Provide byte-range reading of remote datasets
re: issue https://github.com/Unidata/netcdf-c/issues/1251

Assume that you have the URL to a remote dataset
which is a normal netcdf-3 or netcdf-4 file.

This PR allows the netcdf-c to read that dataset's
contents as a netcdf file using HTTP byte ranges
if the remote server supports byte-range access.

Originally, this PR was set up to access Amazon S3 objects,
but it can also access other remote datasets such as those
provided by a Thredds server via the HTTPServer access protocol.
It may also work for other kinds of servers.

Note that this is not intended as a true production
capability because, as is known, this kind of access to
can be quite slow. In addition, the byte-range IO drivers
do not currently do any sort of optimization or caching.

An additional goal here is to gain some experience with
the Amazon S3 REST protocol.

This architecture and its use documented in
the file docs/byterange.dox.

There are currently two test cases:

1. nc_test/tst_s3raw.c - this does a simple open, check format, close cycle
   for a remote netcdf-3 file and a remote netcdf-4 file.
2. nc_test/test_s3raw.sh - this uses ncdump to investigate some remote
   datasets.

This PR also incorporates significantly changed model inference code
(see the superceded PR https://github.com/Unidata/netcdf-c/pull/1259).

1. It centralizes the code that infers the dispatcher.
2. It adds support for byte-range URLs

Other changes:

1. NC_HDF5_finalize was not being properly called by nc_finalize().
2. Fix minor bug in ncgen3.l
3. fix memory leak in nc4info.c
4. add code to walk the .daprc triples and to replace protocol=
   fragment tag with a more general mode= tag.

Final Note:
Th inference code is still way too complicated. We need to move
to the validfile() model used by netcdf Java, where each
dispatcher is asked if it can process the file. This decentralizes
the inference code. This will be done after all the major new
dispatchers (PIO, Zarr, etc) have been implemented.
2019-01-01 18:27:36 -07:00
Ed Hartnett
6f969b0117 separate HDF5 initialization 2018-11-26 05:35:44 -07:00
Ed Hartnett
d9ef143d1e separated cache code from hdf5file.c 2018-09-14 13:33:22 -06:00
Ed Hartnett
9b0192fe94 moved memfile code to libhdf5 2018-07-19 07:26:27 -06:00
Ed Hartnett
3c0abc3d28 moved hdf5 var code to hdf5var.c 2018-07-19 07:23:03 -06:00
Ed Hartnett
bdca4313c4 split nc4var.c 2018-07-19 07:05:55 -06:00
Ed Hartnett
b0f9f965b7 clean up, moved hdf5open and hdf5create code to their own code files 2018-07-17 08:29:47 -06:00
Ed Hartnett
9354535ae4 moved code to hdf5create.c 2018-07-17 07:55:27 -06:00
Ed Hartnett
f2cb4678ee moving HDF5 functions to libhdf5 2018-05-24 14:27:16 -06:00
Ed Hartnett
3e320a5bfb moved more HDF5 functions to libhdf5 2018-05-15 06:47:52 -06:00
Ed Hartnett
a68f57a0e5 added missing files 2018-05-08 12:20:55 -06:00