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468 Commits

Author SHA1 Message Date
Dennis Heimbigner
80cf3a2c75 fix typo in previous checkin 2013-03-08 18:27:45 +00:00
Dennis Heimbigner
841f7c7148 Move onstack.h from libsrc 
to include because it is used
both in libsrc and libdispatch
 2013-03-08 18:08:11 +00:00
Ward Fisher
0444a6c711 Fixed a couple of tests on Windows, 
Fixed some compile errors on Windows.
 2013-02-21 23:56:15 +00:00
Ward Fisher
ddf3c31bb0 Corrected a handful of syntax issues in CMake config files, 
probably introduced more.  

Added CMake-related files to Makefile.am files for inclusion
when creating a distribution package.
 2013-02-20 23:28:28 +00:00
Ward Fisher
21523c8582 Merged changes from cmake branch. oc2 changes are just 
'file property' changes, not sure what exactly.
 2012-12-20 21:50:45 +00:00
Dennis Heimbigner
5f2eb8afbf Fix a number of potential problems by changing calls to nc_XXX to NC3/4_XXX 2012-12-12 20:05:06 +00:00
Ward Fisher
81280c7878 Merge from latest netcdf-cmake branch. 
- Fixes for Windows.
- CMake-based changes (functionality, tests).
- Smattering of coverity-informed bug-fixes.
 2012-12-05 18:35:42 +00:00
Russ Rew
f8ec45d20d Fix NCF-209, bug causing netcdf-fortran build to get assertion violation in 'make check' 2012-12-03 21:15:30 +00:00
Dennis Heimbigner
a53682fc66 fix Jira NCF-207: double call to del_from_NCLIST 2012-11-21 17:52:49 +00:00
Ward Fisher
ff631c8156 Merged latest changes from cmake branch. 
o Improved CMake support.
o Cmake module compatibility (netcdf-config*.cmake.in).
 2012-11-19 21:43:12 +00:00
Ward Fisher
afa67452f6 Took some time to address a handful of errors identified by Coverity. 
Primarily focused on memory errors falling into a couple different types:

1) Static overrun errors.
2) Dereference uninitialized memory errors.

make distcheck works after applying these fixes, and coverity no longer sees an issue, so hopefully they are properly resolved.
 2012-11-14 18:24:45 +00:00
Ward Fisher
057701e1fa Added man pages to 'make install' 2012-10-17 21:14:30 +00:00
Ward Fisher
d0a665f83f Including .c files generated from .m4 to accomodate 
Windows users (who generally will lack m4).  This policy
can be re-evaluated if need be.
 2012-10-02 16:45:27 +00:00
Dennis Heimbigner
076e78e91c Fix Jira bug NC-198 2012-10-02 14:54:19 +00:00
Ward Fisher
cb10672d0d 2012-09-14 22:54:55 +00:00
Ward Fisher
1a72ec6adb 2012-09-14 21:38:46 +00:00
Ward Fisher
59af056da6 2012-09-14 16:15:18 +00:00
Ward Fisher
2de3388cf1 Additional CMake usage. 2012-09-13 18:27:23 +00:00
Ward Fisher
a83c1bd851 2012-09-12 20:18:48 +00:00
Ward Fisher
53843f134e 2012-09-10 22:37:38 +00:00
Ward Fisher
f820e5e5ee 2012-09-10 21:19:57 +00:00
Ward Fisher
54a3c8290a 2012-09-07 16:34:23 +00:00
Ward Fisher
776e179f23 Corrected CMakeList files. 2012-09-06 21:50:00 +00:00
Ward Fisher
e55d002dbc Merged Dennis' changes from trunk. 2012-09-06 21:15:37 +00:00
Dennis Heimbigner
5ca78309cc The effect of this change is to make the struct NC structure 
contain as little file-type specific info as possible.  It
modifies especially libsrc so that all of the netcdf-3 data
that used to be in struct NC is now kept in a separate chunk
of data pointed to by the struct NC. This makes all of
current protocols consistent: netcdf-3, netcdf-4, and dap.
 2012-09-06 19:44:03 +00:00
Ward Fisher
04e61d5894 Added MSVC-compatibility items. 2012-08-27 21:19:25 +00:00
Ward Fisher
d5d15cbdd1 Added a minor change from the trunk. 2012-08-24 18:42:40 +00:00
Ward Fisher
e8453be1e5 Merged from trunk into branch 2012-08-20 18:30:04 +00:00
Russ Rew
4d6f11288b Fix Coverity complaint about passing big parameter by value 2012-08-17 22:00:36 +00:00
Ward Fisher
c8febf92ed Modified related to m4 file conversion macro. 2012-08-13 16:10:36 +00:00
Ward Fisher
14619ec4c4 2012-08-09 18:40:41 +00:00
Ward Fisher
0607b62375 Added coverage test flags to CMakeLists.txt files. 2012-08-09 17:07:41 +00:00
Ward Fisher
0d90326575 Integrated latest changes to trunk, added preliminary CPack support. 2012-08-02 22:56:57 +00:00
Dennis Heimbigner
bc3a732e25 fix e-support YOP-841363 plus a number of coverity found bugs 2012-08-02 18:43:21 +00:00
Ward Fisher
111ea759e1 CMake Integration 2012-07-19 22:30:05 +00:00
Ward Fisher
86b9a01f2d Merged changes from trunk. 2012-07-19 21:38:43 +00:00
Ward Fisher
71075cee2e Additional changes in support of CMake. 2012-07-18 21:12:58 +00:00
Dennis Heimbigner
cd36ff7682 fix #elif problem 2012-07-18 16:14:08 +00:00
Dennis Heimbigner
8c01f7437f fixed valgrind error in tst_h_strings.c 2012-07-18 15:50:29 +00:00
Ward Fisher
d66293beca More changes in support of CMake support 2012-07-17 21:44:41 +00:00
Ward Fisher
2dc39563cc Changes in suport of CMake 2012-07-16 22:31:35 +00:00
Ward Fisher
ec4b3dd141 2012-07-13 16:49:20 +00:00
Ward Fisher
8f508bedba Updatec CMakeLists.txt 2012-07-13 16:37:14 +00:00
Ward Fisher
b2210e7166 Added missing CMakeLists.txt file. 2012-07-10 17:45:28 +00:00
Ward Fisher
75a48b9e9e Integrated changes from trunk, began adding CMake support, updated 'build everything' script. 2012-07-02 22:59:59 +00:00
Dennis Heimbigner
60b3f3b6f3 change file permissions for memio and mmapio 2012-06-28 17:12:02 +00:00
Russ Rew
3e37e69b8e Fixed ncdump to return failure status when unknown option specified. 
Removed extra netcdf_par.h include file.
 2012-06-27 15:03:19 +00:00
Dennis Heimbigner
a6b932826b add NC_MMAP flag and tests 2012-06-23 19:25:49 +00:00
Russ Rew
74f8a38e2a Test for macro definitions of LLONG_MAX, LLONG_MIN, ULONG_MAX in <limits.h> to fix portability problem. 2012-06-05 17:02:43 +00:00
Russ Rew
d6d38094c2 Cleaned up tst_atts3.c test program. Fixed several bugs in detection 
of NC_ERANGE errors, especially with unsigned types, resolving most
NCF-172 issues and confusion between long and long long types in
llibsrc/ncx.m4.  Eliminated some unnecessary tests, e.g. tests
for negative values for unsigned types.
 2012-05-31 01:28:42 +00:00
Russ Rew
1f4eeafcb9 Fixed doxygen installation guide source file to preserve line breaks 
in code and scripts.

Fixed bug NCF-171: error reading external int into longlong or writing
from longlong array to external int on 32-bit platforms and classic
format files.

Promoted test demonstrating NCF-171 bug from longlong array from
"extra test" to "test".
 2012-05-29 15:50:15 +00:00
Dennis Heimbigner
5b2aee44a7 windows support fixes plus add --disable-diskless 2012-05-15 17:48:27 +00:00
Dennis Heimbigner
14c3dae49e more win32 fixes 2012-05-15 03:47:52 +00:00
Dennis Heimbigner
4f68d6c5f8 win32/mingw fixes 2012-05-15 03:13:08 +00:00
Dennis Heimbigner
00e50f5a44 1. changed from using port 8080 to 8081 for motherlode 
2. Fixed Ward's IGNORE problem with oc
3. Mmap support now works.
4. Fix an uninitialized variable pointed out by Russ in dnclog.c
 2012-04-22 20:34:21 +00:00
Dennis Heimbigner
e29a6fb164 added list of configure flags to man4/install.doc 2012-04-13 02:41:00 +00:00
Dennis Heimbigner
353b7ebf53 fix bug in memio.c realloc code 2012-04-12 02:06:28 +00:00
Dennis Heimbigner
48ca394d2e diskless: make read and write loop to read/write whole file when persisting 2012-04-09 22:03:02 +00:00
Dennis Heimbigner
5536bccee1 allow NC_DISKLESS with nc_open() to operate as a in-memory cache 2012-04-08 22:47:38 +00:00
Russ Rew
8a9599c850 Merge my branch back into trunk! 2012-04-01 23:42:53 +00:00
Dennis Heimbigner
7a9802dc7c forgot to check the case when HAVE_MEMMOVE is false 2012-03-28 17:46:25 +00:00
Dennis Heimbigner
7e27052f87 - Implemented diskless files for both netcdf classic and extended. 
The in-memory files can be made persistent if nc_create is called with
  NC_DISKLESS|NC_WRITE flags set. Initial test case also included.
- Modified ncio mechanism to support
  multiple ncio packages; this is so we
  can have posixio and memio operating
  at the same time.
- cleanup up a bunch of lint issues (unused variables, etc).
 2012-03-26 01:34:32 +00:00
Dennis Heimbigner
25c3167841 ckp 2012-03-26 01:30:22 +00:00
Russ Rew
7592240cb1 recommit Khroulev fix I thought I committed in January 2012-03-20 19:06:08 +00:00
Dennis Heimbigner
99eef24bc2 - Fix NCF-158 to modify ncgen flag defaults. 
- Fix NCF-157 to modify DAP code to support
  partial variable retrieval.
- Fix of NCF-154 to solve problem of ncgen
  improperly processing data lists for variables
  of size greater than 2**18 bytes.
- Fix ncgen processing of char variables that have
  multiple unlimited dimensions.
- Partly fix Jira issue: NCF-145 (vlen issues).
- Benchmark program nc_test4/tst_ar4_*) requires arguments
  and should only be invoked inside a shell
  script; fixed so that they terminate cleanly
  if invoked with no arguments.
- Fix the Doxygen processing so it will work
  with make distcheck.
- Begin switchover to using an alternative to ncio.
- Begin support for in-memory (diskless) files.
 2012-03-14 23:26:48 +00:00
Dennis Heimbigner
3e592a2604 fix dap string handling 2012-02-03 21:31:50 +00:00
Dennis Heimbigner
7b3c25b9db restore hashbig visibility 2012-01-30 17:06:59 +00:00
Dennis Heimbigner
76f9b30ea9 fix reference to hashbig 2012-01-30 16:55:39 +00:00
Dennis Heimbigner
aebd11348a 1)Integrate the oc with improved performance 2012-01-29 18:56:29 +00:00
Ed Hartnett
7b47adf3a1 removed executable permissions from all code files 2011-10-04 16:05:11 +00:00
Dennis Heimbigner
1578ddac0c 2011-09-20 20:39:04 +00:00
Dennis Heimbigner
732fbff7ce 2011-09-20 17:30:02 +00:00
Dennis Heimbigner
12d4f46668 2011-09-18 20:57:51 +00:00
Russ Rew
75af04d4a8 Fix NCF-101 bug, and add test for fix. Delete debugging leftover in nccopy.c. Fix typo in installation guide. 2011-07-18 19:11:28 +00:00
Dennis Heimbigner
4f30d3694c cleanup misc. issues 2011-07-14 22:24:02 +00:00
Ed Hartnett
296ca23237 minor changes to improve visual studio and vxworks builds 2011-07-13 12:36:22 +00:00
Ed Hartnett
17d09ddac5 moved string.c to libdispatch 2011-07-12 17:58:42 +00:00
Dennis Heimbigner
fec4cdb230 Fixed the following Jira minor bugs: 
NCF-42: _Format attribute sometimes being ignored
NCF-43: Fixed unsigned long long parsing.
NCF-47: Make opendap code properly handle illegal names like "x.y" by
        supressing them
NCF-49: check for uint type
NCF-50: properly handle username:pwd embedded in urls.
 2011-05-12 17:51:32 +00:00
Russ Rew
74c9b713bd Fix for nofill bug and test 2011-04-28 19:50:56 +00:00
Ed Hartnett
4de8b33251 rolled everything back to 1119 2011-04-28 17:11:21 +00:00
Russ Rew
0f4a94518d Fixed nofill bug, cosmetic updates to tutrial 2011-04-28 15:08:03 +00:00
Dennis Heimbigner
80d8926bad fix user+password;also the bad-name problem;also merged libncdap3+ncdap4->libdap2 2011-04-27 20:50:27 +00:00
Ed Hartnett
965a3aac70 minor refactor of the build system to work better for cross-compiling 2011-03-15 10:19:08 +00:00
Dennis Heimbigner
bc5abe766e fixed opendap perf. bug for nc_get_vars 2011-02-23 17:37:11 +00:00
Ed Hartnett
1a3ba4a6d8 cywin-mingw32 dlls now building 2011-01-06 20:12:06 +00:00
Dennis Heimbigner
f7e41dde66 add cdmremote skeleton code 2010-12-15 21:45:05 +00:00
Ed Hartnett
184b2d0945 freed new path string for nc3 and nc4 files 2010-12-01 18:21:47 +00:00
Ed Hartnett
03f63a5f1c many changes for memory fixes 2010-11-29 22:23:16 +00:00
Ed Hartnett
8cc0fd982f fixed valgrind problems 2010-11-29 21:07:09 +00:00
Russ Rew
23307ac97b Fix bug in name/hash code for renaming a dimension. 2010-11-23 18:10:51 +00:00
Dennis Heimbigner
b2c05fa4d0 fixed: 
ncgen: nan bug
       made semicolons optional after type decls
libncdap{3,4}: revamped the NC surrogate to better match
       with libsrc
libdispatch: Added a new_nc function to the dispatch table; its purpose
                 is to allow hierarchical use of NC compatible data structures.
libsrc: cleaned up the NC structure by removing drno field
general: removed --with-oc options
 2010-11-09 22:53:03 +00:00
Ed Hartnett
a658960034 added more valgrind testing 2010-10-13 22:53:25 +00:00
Ed Hartnett
a27fd4390c added opendap memory test 2010-08-20 17:20:32 +00:00
Ed Hartnett
1aedb82327 fixed some memory problems, more progress towards nc_inq_path 2010-08-19 17:37:29 +00:00
Ed Hartnett
a0e1b037e5 added nc_inq_path in dispatch tables 2010-08-18 15:11:17 +00:00
Russ Rew
bd267e503b merge recent trunk changes 2010-08-09 22:27:24 +00:00
Dennis Heimbigner
ea8379719c fixed char datalist bug and did some more dispatch cleanup 2010-08-09 20:39:36 +00:00
Russ Rew
252fbb9b9b merge with latest trunk changes 2010-08-08 23:17:15 +00:00
Dennis Heimbigner
7e1ce62211 fix undefined fsync warning: HT to Larry Baker 2010-08-06 01:16:48 +00:00
Dennis Heimbigner
dd4fe6d25c dispatch.h->ncdispatch.h to avoid visualstudio filename conflict 2010-08-05 02:44:59 +00:00
Russ Rew
b07789adfd turn on VALGRIND macro for portability 2010-08-03 18:59:54 +00:00
Russ Rew
7b259541c4 Merged latest trunk changes to my branch. 2010-07-31 23:37:04 +00:00
Dennis Heimbigner
6edff3f964 cleanup pre-dispatch stuff 2010-07-30 22:16:15 +00:00
Dennis Heimbigner
c5cb1104b7 removed USE_DISPATCH and most uses of nc3 from libsrc4 2010-07-30 19:20:22 +00:00
Russ Rew
bedaaf998f Added file with Bob Jenkin's hash functions, modified for use in 
netCDF dim and var lookup.
 2010-07-30 16:12:53 +00:00
Russ Rew
86cfc908ad Get rid of uses of NC_MAX_DIMS in ncdump that are easy to eliminate.Get rid of some uses of NC_MAX_DIMS from nccopy. Add libsrc/pstdint.hfor systems that have no stdint.h. 2010-07-29 22:41:05 +00:00
Russ Rew
0790f81cf9 Merged var/dim name hashing for fast lookups into my branch. 2010-07-28 21:42:03 +00:00
Russ Rew
7a34f42844 Applied Harold Anlauf's patch for a longstanding bug in 
libsrc/posixio.c when providing a sizehint which is larger than the
hardcoded value of NCIO_MAXBLOCKSIZE, which doesn't then get used.
 2010-06-30 17:27:24 +00:00
Ed Hartnett
2ce4c3e368 removed unneeded files from repository 2010-06-29 14:22:30 +00:00
Ed Hartnett
bb57cf2e4b moved functions out of m4 into c files in libdispatch/netcdf.m4 2010-06-18 14:01:51 +00:00
Ed Hartnett
4496123ff7 moved tests t_nc and t_type from libsrc to nc_test and nc_test4 to simplify build 2010-06-10 21:10:50 +00:00
Ed Hartnett
1e87ea9cbd fixed shared build problems 2010-06-09 16:01:32 +00:00
Ed Hartnett
bb0035c95d fixed Makefile.am includes to find new netcdf.h location 2010-06-07 15:40:31 +00:00
Ed Hartnett
440ee71dad fixed t_nc to work with new location of strerror 2010-06-07 12:50:53 +00:00
Ed Hartnett
cdabf7bbf4 build system clean-up 2010-06-03 20:33:02 +00:00
Ed Hartnett
92ccf1c5fa moved headers to include directory 2010-06-03 20:22:55 +00:00
Ed Hartnett
ebd2ba0bc3 fixed makefile problem for libsrc 2010-06-03 19:20:05 +00:00
Ed Hartnett
18f4bca367 moving to trunk subdir 2010-06-03 13:24:43 +00:00