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419 Commits

Author SHA1 Message Date
Ward Fisher
e4f81a1611 Fixed issue on 32-bit systems. 2017-07-05 14:57:12 -06:00
Ward Fisher
12d224eeef Corrected an issue in support of https://github.com/Unidata/netcdf-c/issues/420 2017-06-09 12:46:37 -06:00
Ward Fisher
b73c81697c Removed a line in configure.ac that is potentially redundant and throws an error on some systems. In support of https://github.com/Unidata/netcdf-c/issues/413 2017-06-08 12:38:43 -06:00
Ward Fisher
4097dd9826 Change to address issue reported in https://github.com/Unidata/netcdf-c/issues/413 2017-06-08 11:55:00 -06:00
Ward Fisher
f8c7df70b3 Corrected an issue where run_diskless2.sh was not properly configured. 2017-05-10 16:55:47 -06:00
Ward Fisher
051bd3b81a Merge branch 'master' into open_check_vlens 2017-05-05 17:02:36 -06:00
Ward Fisher
ce20f3bf53 Corrected a build issue on windows for tst_diskless5, and updated release notes. 2017-05-04 10:58:18 -06:00
Dennis Heimbigner
455f3b9976 typo 2017-05-03 10:19:35 -06:00
Dennis Heimbigner
5a0c7abb8f Add testcase 2017-05-03 09:58:49 -06:00
Ward Fisher
8dddd222a3 Merged master, DAP4 support into branch. 2017-04-19 09:29:35 -06:00
Ward Fisher
b5b99cbebb Merge branch 'master' into ghpull-375 2017-04-05 16:24:55 -06:00
Dennis Heimbigner
6d8809100f Fix pull request https://github.com/Unidata/netcdf-c/pull/374 (dap4.dmh) 
1. When running under windows (as opposed to cygwin)
   we need to make sure to not user /cygdrive/ file paths.
   This was ocurring in libdap4/d4read.c, but may occur
   elsewhere.
2. Shell scripts in the git repo are not being checked-out
   with the executable mode set. Had core.filemode set to false.
   Was a major hassle to fix.
 2017-04-03 21:39:44 -06:00
Wei-keng Liao
1af2643fb8 rename macro ERR to ERR_CHK, as ERR is already defined in err_macros.h 2017-04-03 22:17:36 -05:00
Dennis Heimbigner
5f15c9e777 1) master merge 2)fix uname -o problem 2017-03-30 16:21:31 -06:00
Ward Fisher
45e30475f6 Updated release notes to reflect new return, modified test to check for proper expected return value. 2017-03-29 15:47:48 -06:00
Ward Fisher
92ef49d4ed Updated release notes. 2017-03-29 15:43:45 -06:00
Ward Fisher
16169a27af Wiring in test in support of https://github.com/Unidata/netcdf-c/issues/388 2017-03-29 15:25:38 -06:00
Ward Fisher
e5fb53f996 Restored line that was accidentally removed. 2017-03-29 11:38:59 -06:00
Ward Fisher
6b036cfc28 Adding test in support of https://github.com/Unidata/netcdf-c/issues/384 2017-03-29 11:23:47 -06:00
Ward Fisher
2bf5f09bcc Corrected an issue on *nix systems 2017-03-16 15:13:38 -06:00
Ward Fisher
80d2b914a1 Updates for Visual-Studio-based builds. 2017-03-16 14:34:33 -06:00
Ward Fisher
53c018a3f6 Attempting to fix visual studio errors in support of https://github.com/Unidata/netcdf-c/pull/375 2017-03-13 15:12:47 -06:00
Wei-keng Liao
01cf5f4339 silence warnings from Travis CI 2017-03-11 12:51:04 -06:00
Wei-keng Liao
af258dcec9 update for arm to use char as much as possible, instead of signed char 2017-03-10 12:00:59 -06:00
Ward Fisher
8e3790f7ce Merged master. 2017-03-09 12:53:28 -07:00
Dennis Heimbigner
3db4f013bf Primary change: add dap4 support 
Specific changes:
1. Add dap4 code: libdap4 and dap4_test.
   Note that until the d4ts server problem is solved, dap4 is turned off.
2. Modify various files to support dap4 flags:
	configure.ac, Makefile.am, CMakeLists.txt, etc.
3. Add nc_test/test_common.sh. This centralizes
   the handling of the locations of various
   things in the build tree: e.g. where is
   ncgen.exe located. See nc_test/test_common.sh
   for details.
4. Modify .sh files to use test_common.sh
5. Obsolete separate oc2 by moving it to be part of
   netcdf-c. This means replacing code with netcdf-c
   equivalents.
5. Add --with-testserver to configure.ac to allow
   override of the servers to be used for --enable-dap-remote-tests.
6. There were multiple versions of nctypealignment code. Try to
   centralize in libdispatch/doffset.c and include/ncoffsets.h
7. Add a unit test for the ncuri code because of its complexity.
8. Move the findserver code out of libdispatch and into
   a separate, self contained program in ncdap_test and dap4_test.
9. Move the dispatch header files (nc{3,4}dispatch.h) to
   .../include because they are now shared by modules.
10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts.
11. Make use of MREMAP if available
12. Misc. minor changes e.g.
	- #include <config.h> -> #include "config.h"
	- Add some no-install headers to /include
	- extern -> EXTERNL and vice versa as needed
	- misc header cleanup
	- clean up checking for misc. unix vs microsoft functions
13. Change copyright decls in some files to point to LICENSE file.
14. Add notes to RELEASENOTES.md
 2017-03-08 17:01:10 -07:00
Dennis Heimbigner
47daf33074 Resolves Github issue https://github.com/Unidata/netcdf-c/issues/349. 
Update utf8proc.[ch] to use the version now
maintained by the Julia Language project
(https://github.com/JuliaLang/utf8proc/blob/master/LICENSE.md).
The license for the previous version was
unacceptable for the Debian and Ubuntu release
systems. The new version both updates the code
and addresses the license issue.

It turns out that the utf8proc software we are using
was turned over to the Julia Language developers
and the license terms changed to allow modification.
(https://github.com/JuliaLang/utf8proc/blob/master/LICENSE.md).

So the fix here is as follows:
1. Wrap the library with a fixed interface: libdispatch/dutf8.c
   and include/ncutf8.h.
2. Replace the existing utf8proc code with the new version
   from https://github.com/JuliaLang/utf8proc.
3. Add a couple more test cases: nc_test/tst_utf8_validate.c
   and nc_test_utf8_phrases.c.  If/when I can find a usable
   normalization test, I will incorporate that later.
 2017-02-16 14:27:54 -07:00
Ward Fisher
9db19d75ec Found what appears to be the issue in testing attributes. The code was casting a negative double to a char (unsigned, on ARM), resulting in a value of 0 instead of the expected value of -128. 2017-02-14 16:53:38 -07:00
Ward Fisher
047760bbf1 Changing data types to get tests to run on ARM. Once all tests are running (albeit as signed char instead of unsigned char) we can worry about modifying the tests so that what we want to test is what's being tested. 2017-02-14 16:48:52 -07:00
Ward Fisher
50155b0170 More debugging in support of https://github.com/Unidata/netcdf-c/issues/319. 2017-02-14 12:34:31 -07:00
Ward Fisher
e100aaf6b0 We cannot assume char is signed or unsigned. 2017-02-07 14:20:59 -07:00
Ward Fisher
7a0e61f97c Corrected first test failure in nc_test. Cannot assume MAX_CHAR is 255, as char is not universally unsigned by default. 2017-02-07 11:41:55 -07:00
Wei-keng Liao
340f0d2a91 Classic Format Specification says: Header padding uses null (\x00) bytes 2016-11-28 11:54:16 -06:00
Wei-keng Liao
ab73a57fca Merge branch 'master' into issue258 2016-11-25 10:49:03 -06:00
Ward Fisher
b4785f4081 Housekeeping on large file tests. 2016-11-18 15:48:58 -07:00
Wei-keng Liao
33865dfbf8 skip tests that are incompatible with the earlier PnetCDF versions, eg. 1.6.0, 1.6.1 and 1.7.0 2016-11-18 01:29:59 -06:00
Wei-keng Liao
38e40a14d2 sync with PnetCDF nc_test files (add a few more testings) 2016-11-14 11:19:23 -06:00
Wei-keng Liao
2081ae7099 add configure option --enable-relax-coord-bound for issue #243 2016-11-12 23:58:09 -06:00
Wei-keng Liao
e357696c8d sync with PnetCDF on use of NC_ENULLSTART and NC_ENULLCOUNT 2016-11-04 17:29:40 -05:00
Wei-keng Liao
06c1f744e8 silence gcc compile warnings when using -Wconversion 2016-10-30 00:44:28 -05:00
Wei-keng Liao
04e5ff4c74 sync with master branch 2016-10-28 11:54:25 -05:00
Wei-keng Liao
309303e34e remove argument fillv for get APIs as we use default fill values for fillv 2016-10-28 10:34:51 -05:00
Wei-keng Liao
f19e4ce81e sync m4 files with PnetCDF 2016-10-25 15:11:16 -05:00
Wei-keng Liao
87fab92924 match type of a subroutine argument 2016-10-25 13:28:38 -05:00
Wei-keng Liao
d78ec898e5 SCHAR_MAX is 127, not 128 2016-10-25 13:21:54 -05:00
Ward Fisher
b37784ed7f Corrected parallel tests in support of https://github.com/Unidata/netcdf-c/issues.321 2016-10-24 22:45:15 +00:00
Ward Fisher
1c11fc5d59 More refactoring, pushing to avoid accidental loss. 2016-10-21 19:24:40 +00:00
Ward Fisher
157af11bc2 Refactoring tests to separate out error macros from tests, in support of fixing http://github.com/Unidata/netcdf-c/issues/321 2016-10-21 17:17:39 +00:00
Wei-keng Liao
08afcf1f88 add missing tests from the original netCDF 2016-10-13 13:25:16 -05:00
Wei-keng Liao
6737a38a24 add back a fix for NC_EDIMSIZE 2016-10-13 03:26:08 -05:00
Wei-keng Liao
beac085c7d more updates due to renaming test_read.c and test_write.c to m4 files 2016-10-13 02:56:50 -05:00
Wei-keng Liao
ac86d8c9fb Update CMakeLists.txt due to test_read.c and test_write.c have been renamed to m4 files 2016-10-13 02:25:21 -05:00
Wei-keng Liao
3a93d84a67 borrow some m4 files from PnetCDF 2016-10-13 02:17:31 -05:00
Wei-keng Liao
fbbed1f9ff move ncid check to the first and add varid check before name check 2016-10-13 02:12:26 -05:00
Wei-keng Liao
c4a148e136 type cast (char) before comparison 2016-10-10 00:20:23 -05:00
Wei-keng Liao
835ff7cd1e make test subroutine return nok, add comments on X_CHAR_MIN and X_CHAR_MAX 2016-10-09 22:18:46 -05:00
Wei-keng Liao
9cf01256cf revise sunroutine equal, add equal2 for matched ityep and xtype APIs, and add nc_err_code_name 2016-10-09 22:16:09 -05:00
Wei-keng Liao
ecc851b21c borrow PnetCDF test_put.m4 2016-10-09 22:13:40 -05:00
Wei-keng Liao
aacb3c2e11 borrow PnetCDF test_get.m4 2016-10-09 22:13:30 -05:00
Wei-keng Liao
0eff6cb128 add CDF format checking in hash4 to exclude the NC_BYTE-to-uchar exception fro CDF-5 format 2016-10-08 13:48:22 -05:00
Wei-keng Liao
e1643f9fd8 handle special case when calling _uchar APIs to access NC_BYTE attributes/variables in CDF-2 file format (no NC_ERANGE check) 2016-10-06 00:50:52 -05:00
Wei-keng Liao
f8813bbd04 handle special case when calling _uchar APIs to access NC_BYTE attributes in CDF-2 file format 2016-10-06 00:49:13 -05:00
Ward Fisher
486f69522c Merged utility-based tests fix into cmake-based builds. 2016-08-31 15:48:10 -06:00
Ward Fisher
b2e4b74e3a Restricted tests from running when they require the utilities but the utilities were not built, in autoconf-based tests. See https://github.com/Unidata/netcdf-c/issues/313 for more information. 2016-08-31 15:38:59 -06:00
Greg Sjaardema
2bfd984fad Update testing -- not error if start==size 2016-07-21 09:30:18 -06:00
Dennis Heimbigner
11a259ad86 Add provenance info for netcdf-4 files. 
This consists of a persistent attribute named
_NCProperties plus two computed attributes
_IsNetcdf4 and _SuperblockVersion.
See the 'Provenance Attributes' section
of docs/attribute_conventions.md for details.
 2016-05-07 14:32:07 -06:00
Ward Fisher
baec7157a3 Clean up lingering 'make distcheck' errors. 2016-04-12 09:48:21 -06:00
Ward Fisher
33e43e15f1 Merge branch 'master' into gh240 in preparation for final merge. 2016-04-05 20:28:03 +00:00
Ward Fisher
d8592ef380 Updated tests now that things are passing. Added some true failures to test for as well. 2016-04-05 20:25:49 +00:00
Ward Fisher
829036ab7f Corrected an issue with out-of-source-tree builds, in support of https://github.com/Unidata/netcdf-c/issues/242 2016-04-04 15:27:22 -06:00
Ward Fisher
aa6a3969b7 Included expected failures for netcdf-3 files and nc_inq_type. 2016-03-30 15:03:20 -06:00
Ward Fisher
7adad14ec7 Further fleshing out the test. 2016-03-28 19:19:21 +00:00
Ward Fisher
5a5295406d Updated test. 2016-03-28 19:12:11 +00:00
Ward Fisher
a369ddb0bb Fleshed out test for nc_inq_type 2016-03-28 18:49:56 +00:00
Ward Fisher
93641eb2d6 Refactored types test. 2016-03-28 18:29:47 +00:00
Ward Fisher
69911758a9 Made a small change to ifFail to accomodate PGI compilers. 2016-03-23 16:48:15 -06:00
Ward Fisher
79c021712a Removed generated tests from source control. Ensuring generated files are regenerated if m4 is present. 2016-01-22 12:03:28 -07:00
Ward Fisher
2d25f9b915 Updated CMakeLists to explicitely look for static or shared hdf5 libraries. Required as part of hdf5 1.8.16, and is documented in https://github.com/Unidata/netcdf-c/issues/186 2016-01-07 14:11:44 -07:00
Ward Fisher
023356ba9b Fixed typos. 2015-12-29 12:39:35 -07:00
Ward Fisher
19cfaa9308 A bit of cleaning up for the merge into master. 2015-12-29 11:12:50 -07:00
Ward Fisher
cee769cc1e Converting CHAR_IS_SIGNED over to autoconf-style __CHAR_UNSIGNED__ 2015-12-28 21:27:27 +00:00
Ward Fisher
90541e6c17 Cleanup: Removing temporary tests. 2015-12-28 21:17:25 +00:00
Ward Fisher
8e4a8f4225 Chasing down implicit char cast which rounds a value to 0 when a negative value is cast to a different unsigned type. 2015-12-28 20:24:56 +00:00
Ward Fisher
bd92caa176 More changes towards fixing the issue where the file is read incorrectly. 2015-12-28 17:36:05 +00:00
Ward Fisher
925da14d2a Some additional errors reared up after fixing the main frustrating one. Working towards fixing them. 2015-12-24 01:37:42 +00:00
Ward Fisher
d10688a6fb Issue identified, see https://github.com/Unidata/netcdf-c/issues/159 for specifics. Also see http://stackoverflow.com/questions/10541200/is-the-behaviour-of-casting-a-negative-double-to-unsigned-int-defined-in-the-c-s for some background info that lead me to the fix. 2015-12-23 22:08:13 +00:00
Ward Fisher
3e2a1cc540 Tweaking the test a little bit 2015-12-23 21:29:30 +00:00
Ward Fisher
8e3c7febf3 More tweaks during debugging. 2015-12-23 21:21:57 +00:00
Ward Fisher
bd6f4909cf Captured a conversion error. 2015-12-23 21:17:53 +00:00
Ward Fisher
4d9cb910ca Closer to replicating I think. 2015-12-23 13:00:16 -07:00
Ward Fisher
f83ec50bd0 I think we have this recreated as we would expect. 2015-12-23 19:40:05 +00:00
Ward Fisher
a0de63bcce Additional tweaking of the test. 2015-12-22 23:08:20 +00:00
Ward Fisher
7bf5012481 Duplicating the issue we've observed by forcing an overflow error. 2015-12-22 23:04:16 +00:00
Ward Fisher
5cb4efe02a Tweaked new test. 2015-12-22 15:48:05 -07:00
Ward Fisher
52f0fc8986 Added a test derived from nc_test2 cdf5 test data, for github issue http://github.com/Unidata/netcdf-c/issues/159 2015-12-22 15:44:57 -07:00
Ward Fisher
4055a81b57 Fixed a dangling issue with writing text. 2015-12-22 21:07:30 +00:00
Ward Fisher
b66e37755f Fixed an unsigned-char related issue in test_nc_rename_att. 2015-12-22 13:13:45 -07:00
Ward Fisher
c6fd79dd3a Fixed unsigned char issue in check_atts. 2015-12-22 13:12:31 -07:00
Ward Fisher
92d374cbad Addressed an issue in check_vars when -funsigned-chars 2015-12-22 13:10:09 -07:00
Ward Fisher
60fc0f1181 Fixed an implicit cast in nc2dbl that caused problems when char was unsigned by default. 2015-12-22 13:07:00 -07:00
Ward Fisher
b40f10ee7e nc_test2 is now fixed, but we are seeing issues related to text attributes in nc_test, when -funsigned-char is set in CFLAGS. 2015-12-22 12:59:07 -07:00
Ward Fisher
c0e32ddb80 Fixed text-related range error, now observing value read not expected. 2015-12-22 12:39:16 -07:00
Ward Fisher
f41058c5d4 Fixed range error for signed char test, now we have a range error for nc_get_var_text. 2015-12-22 12:17:00 -07:00
Ward Fisher
2ea988f84d Added a check for signed char. 2015-12-22 12:02:18 -07:00
Ward Fisher
9d4e72e75f Added a test case for bug. 2015-12-22 11:39:24 -07:00
Ward Fisher
612b35a84c Merge branch 'master' into cdf-5, in preparation for merging the CDF-5 functionality into the master branch. This will be the key new feature for netcdf 4.4.0. 2015-11-05 13:40:35 -07:00
Ward Fisher
bf02ded6f4 Merge branch 'ncf344' of https://github.com/Unidata/netcdf-c into ncf344 2015-11-02 12:15:19 -07:00
Ward Fisher
acc4993b19 Changes to modified files. 2015-11-02 12:14:19 -07:00
Ward Fisher
f330e6f11a [NCF-344] Modified addvar test to return 0 when called without an argument. Test doesn't run unless passed a file, but it isn't a failure. The test is run properly through a shell script already. 2015-10-30 17:11:27 +00:00
Ward Fisher
32eee4bbdb Removed a stray backslash. 2015-10-30 17:01:33 +00:00
Ward Fisher
4e60400275 Changing some cmake infrastructure re: how tests are built. 2015-10-29 19:50:48 +00:00
Ward Fisher
b7a4f1c7b5 Updated tests so that tst_addvar.c is run after tst_pnetcdf.c 2015-10-29 10:27:31 -06:00
Ward Fisher
d8835b7f35 Replaced my test program with one provided by Wei-keng. 2015-10-29 10:07:33 -06:00
Ward Fisher
4fb7dc9092 Corrected usage of nc_open_par 2015-10-28 11:28:55 -06:00
Ward Fisher
a28a1f865a Corrected usage of nc_open_par 2015-10-28 11:28:30 -06:00
Ward Fisher
07625e39c2 Fixed an MPI error. 2015-10-28 11:27:36 -06:00
Ward Fisher
117708f464 More work on the parallel bug. 2015-10-28 11:26:23 -06:00
Ward Fisher
183d2b3db0 Using a pre-existing file for a new pnetcdf test. 2015-10-28 11:06:49 -06:00
Ward Fisher
ccad3765ca Adding a new test for a particular pnetcdf bug. See YRZ-543552. 2015-10-28 10:51:53 -06:00
Ward Fisher
390cd7b892 Updated test files. 2015-10-27 12:25:18 -06:00
Ward Fisher
4aca5795ac Regenerated source files from m4 to make things work on Windows. 2015-10-21 11:27:41 -06:00
Ward Fisher
a359cb6a53 Reverted some of the spelling corrections. Some misspellings were intentional 2015-10-16 14:36:17 -06:00
Ward Fisher
519a56019f Merge branch 'fix-typos' of https://github.com/tbeu/netcdf-c into tbeu-fix-typos 2015-10-16 14:16:09 -06:00
dmh
39ccdc5ee3 conflicts 2015-10-11 13:43:19 -06:00
dmh
ed57a337ec add ptrdiff_t checks 2015-10-11 13:35:44 -06:00
Ward Fisher
490198e03c Cleaned up generated files. 2015-10-09 17:08:46 -06:00
Ward Fisher
76621d3ae2 Regenerated files. 2015-10-09 13:06:41 -06:00
Dennis Heimbigner
554034b712 1. Added temporary work-around for cygwin where 
AC_CHECK_SIZEOF is not working because anti-virus
   will not allow very rapid creation/deletion of a
   file with same name.
2. modified some test baselines to attempt to fix
   Ward's issue
 2015-10-09 10:33:40 -06:00
Dennis Heimbigner
dccbc87d24 1. Added temporary work-around for cygwin where 
AC_CHECK_SIZEOF is not working because anti-virus
   will not allow very rapid creation/deletion of a
   file with same name.
2. modified some test baselines to attempt to fix
   Ward's issue
 2015-10-09 10:14:45 -06:00
dmh
087ae58ffd cleanup and squash changes vav master 2015-10-09 10:12:11 -06:00
dmh
49597a64af merge-squash 2015-10-09 10:12:11 -06:00
tbeu
e2820e4d8a Fix common typos 
Detected by https://github.com/vlajos/misspell_fixer
 2015-08-20 11:42:05 +02:00
Ward Fisher
5349c99e8a Removed tst_swap4b for now, it is causing difficulties that are proving problematic to work around. 2015-08-17 16:57:31 -06:00
dmh
fab66699d1 Moved libsrc5 to libsrcp 
because pnetcdf is used for
more than CDF-5 files.
 2015-08-14 20:39:56 -06:00
Russ Rew
6a6cbf4005 More clang warnings eliminated. 2015-08-02 17:19:35 -06:00
Ward Fisher
58573722b6 Corrected an issue with the [NCF-338] test, when using an out-of-source build with autotools. 2015-07-31 15:37:01 -06:00
Ward Fisher
95cbe52b37 Additional changes to hopefully get autotools and tst_swap4b working together in service of addressing [NCF-338] 2015-07-28 13:43:15 -06:00
Ward Fisher
2664eca9e5 Wired the refactored tst_swap4b into autotools and cmake. 2015-07-28 12:24:13 -06:00
Ward Fisher
da82e6dbbb Refactoring of tst_swap4b 2015-07-28 11:14:07 -06:00
Ward Fisher
ac18154e98 Added test for function swap4b. 2015-07-27 15:31:23 -06:00
Ward Fisher
b2bdd83a7f Added skeleton of new test for [NCF338]. 2015-07-27 11:20:44 -06:00
Ward Fisher
64e0d2a44e Added a new test for h4 endianness. [NCF332] 2015-05-28 17:13:15 -06:00
Ward Fisher
6ed4770e0a Added a typedef int pid_t for Windows platforms, solves a unix compatibility issue. 2015-05-28 10:14:45 -06:00
Ward Fisher
0c30751b58 Updated automake file so that 'make distcheck' would pass. 2015-05-18 12:21:40 -06:00
Ward Fisher
fa1d61b980 Additional debugging for [NCF-331] 2015-05-12 13:52:52 -06:00
Ward Fisher
c366bec8b3 Activated a couple new tests on MSVC builds when bash is available. 2015-04-20 16:06:20 -06:00
Ward Fisher
017f196628 Added the [NCF-326] test to CMake build system. 2015-03-10 09:53:13 -06:00
Russ Rew
67ad8d89a8 Fix and test resolution of NCF-326, Unlimited Dimensions NC_EEDGE error. 2015-03-10 06:13:07 -06:00
Ward Fisher
5b40f3a27e Added a platform check for hostname on Windows. Updated how 'diff' is called in a diskless test to ignore whitespace when comparing files. 2015-02-04 09:11:27 -07:00
Ward Fisher
fe1b96cdd9 Updated CMakelists to remove debug, release subdirectories on Windows. Updating shell scripts to work with MSYS paths. 2015-02-02 14:46:50 -07:00
Russ Rew
db83a3be4c Jira issue NCF-314, "Provide replacement for using numeric values of -k 
option on nccopy and ncgen".
 2014-12-29 13:07:28 -07:00
Russ Rew
9a60dc612f Use short "-k" codes instead of deprecated version numbers for ncgen and nccopy tests 2014-12-28 22:42:05 -07:00
dmh
20720199c8 1. synch with oc 
2. fix ocuri parameter handling
3. add ncdap_test/testuri.sh to test parameter handling.
 2014-12-27 20:42:01 -07:00
dmh
f423f27693 Sync with oc project. 
This supports better authorization
handling for DAP requests, especially redirection
based authorization. I also added a new test case
ncdap_tests/testauth.sh.

Specifically, suppose I have a netrc file /tmp/netrc
containing this.
    machine uat.urs.earthdata.nasa.gov login xxxxxx password yyyyyy
Also suppose I have a .ocrc file containing these lines
    HTTP.COOKIEJAR=/tmp/cookies
    HTTP.NETRC=/tmp/netrc
Assume that .ocrc is in the local directory or HOME.

Then this command should work (assuming a valid login and password).
    ncdump -h "https://54.86.135.31/opendap/data/nc/fnoc1.nc"
 2014-12-24 10:22:47 -07:00
Rob Latham
af4eb0fb1d sync lines for generated C files 
m4 can emit 'sync lines' which tell the toolchain "hey, this code
actually came from this other file over here".  Should help prevent
anyone accidentally editing a generated file.
 2014-12-05 12:55:49 -06:00
Rob Latham
54affd88ff synclines and IF macro can interract poorly 
See parallel-netcdf revision 1912:
http://trac.mcs.anl.gov/projects/parallel-netcdf/changeset/1912

the IF macro and scanlines can interact in a way that makes gcc unhappy
 2014-12-05 12:55:38 -06:00
Ward Fisher
4b7349885a Merge branch 'link-what-you-use' of https://github.com/nschloe/netcdf-c into nschloe-link-what-you-use 2014-10-15 14:51:08 -06:00
dmh
d67d00ca7e re NCF-319 
The pnetcdf support was not
properly being used to provide
mpi parallel io for netcdf-3 classic
files. The wrong dispatch table was being
used.  The fix was to modify
dfile.c#NC_check_file_type to properly
specify the pnetcdf dispatch table when
use_parallel was true.
 2014-10-13 14:33:06 -06:00
Nico Schlömer
16ce3507f4 nc_test explicitly uses libm 2014-10-08 12:41:48 +02:00
Ward Fisher
1dae994c75 Removed a stray assignment in the test. 2014-10-06 10:08:36 -06:00
Ward Fisher
63c67fa2e5 Fixed an issue with out-of-source libtool builds related to the netcdf_meta test in nc_test/. 2014-09-22 13:38:34 -06:00
Ward Fisher
1593fccd69 Addressed issues related to running large file tests on machines < 4GB memory. Updated messages to indicate what the problem was specifically, so that I don't spend another day somewhere down the road figuring out the problem yet again. 2014-09-17 13:28:36 -06:00
Ward Fisher
069820158d Added a test to catch errors introduced into netcdf_meta.h 2014-09-11 15:44:56 -06:00
Ward Fisher
2c6b2d8c5e Added nc_test.c to EXTRA_DIST. 
Rebuilding extra_dist in makefile.am

Cleaning up extra_dist stanza in makefile.am.
 2014-09-03 14:46:35 -06:00
Ward Fisher
7bde03714a Fixed an issue preventing make distcheck from working. 2014-09-03 13:11:09 -06:00
Ward Fisher
7c68518ce3 Removed dangling reference to tst_settings.c 2014-09-03 12:50:15 -06:00
dmh
be329e7a23 Add ability to programmatically 
extract info from libnetcdf.settings
API is below.
I have made this API public yet
by adding it to netcdf.h. I will
do that when everyone is agreed on the
proper API.

extern const char* nc_settings(const char* key); /*get value of a specific key */
extern const char** nc_settings_all(); /*get all settings in envv format */
extern void nc_settings_reclaim(); /* reclaim all space and clean up */

Envv format is
{key,value}*,NULL

Also added test: nc_test/tst_settings.c
 2014-08-29 14:51:14 -06:00
Ward Fisher
b43813d821 When using the '-ansi' flag with gcc, netcdf would fail to build because of the use of '//' for one-line comments. I've addressed this by replacing instances of // with enclosing comment blocks. 2014-08-26 11:19:32 -06:00
dmh
a23f750f5d reduce # processors for run_pnetcdf_test.sh 2014-06-20 20:22:55 -06:00
Ward Fisher
7f812b367e Manual merge of pull request https://github.com/Unidata/netcdf-c/pull/64 contributed by nschloe. Assorted CMake improvements. 2014-06-11 15:51:31 -06:00
Ward Fisher
44fae42214 Cleaned up indentation, white space in multiple CMakeLists.txt files. 2014-04-21 11:15:33 -06:00
Ward Fisher
a0c5a08bf7 Changed large_file.c so that overly large variables are allocated dynamically, not at link time. 2014-03-19 12:47:06 -06:00
dmh
582410a407 [NCF-273]/HZY-708311 
Add a new function called nc_inq_format_extended that
returns more detailed format information (vis-a-vis
nc_inq_format) about an open dataset.

Note that the netcdf API will present the file as if it had
the format specified by nc_inq_format.  The true file
format, however, may not even be a netcdf file; it might be
DAP, HDF4, or PNETCDF, for example. This function returns
that true file type.  It also returns the effective mode for
the file.

signature: nc_inq_format_extended(int ncid, int* formatp, int* modep)
where
* ncid is the NetCDF ID from a previous call to nc_open() or
  nc_create().
* formatp is a pointer to a location for returned true format.
* modep is a pointer to a location for returned mode flags.

Refer to the actual list in the file netcdf.h to see the
currently defined set.

Also added test cases (tst_formatx*).
 2013-12-22 12:53:20 -07:00
Quincey Koziol
b3044de434 Refactored read_scale(), memio_new(), var_create_dataset() and makespecial() 
to clean up resources properly on failure.

Refactored doubly-linked list code for objects in the libsrc4 directory,
    cleaning up the add/del routines, breaking out the common next/prev
    pointers into a struct and extracting the add/del operations on them,
    changed the list of dims to add new dims in the same order as the other
    types, made all add routines able to optionally return a pointer to the
    newly created object.

Removed some dead code (pg_var(), nc4_pg_var1(), nc4_pg_varm(), misc. small
    routines, etc)

Fixed fill value handling for string types in nc4_get_vara().

Changed many malloc()+strcpy() pairs into calls to strdup().

Cleaned up misc. other minor Coverity issues.
 2013-12-08 03:29:26 -06:00
Ward Fisher
001d950548 Removed a debug statement. 2013-11-04 13:34:20 -07:00
Ward Fisher
bda59030cb Replaced call to fstat with call to filelength, on apropriate system. 2013-11-01 16:30:33 -06:00
Ward Fisher
78d19f69fd Updating for Windows Large File Support. 2013-10-16 16:44:11 -06:00
dmh
10b0ac536f [NCF-267]/SAI-630695 
Add support for embedded NUL characters
in character arrays and added some test cases.

Note that embedded NULs in netcdf-4
string constants are still illegal. This is
because strings are not counted in the netcdf
API, so they are implicitly NUL terminated.
 2013-09-23 17:11:59 -06:00
Ward Fisher
55eed7ffa1 Removed stray (but harmless) debugging info. Updated windows-binaries documentation to allow both latest stable release as well as latest release candidate. 2013-08-29 15:48:03 -06:00
Ward Fisher
a595c62d7f Updated RELEASE_NOTES with reference to LFS Jira ticket. Temporarily removed an LFS test on Windows. 2013-08-28 16:30:41 -06:00
Ward Fisher
e117af0ab7 Made H5_USE_16_API an option in CMakeLists.txt, added string to describe what it does. 2013-08-28 12:43:45 -06:00
Ward Fisher
8ae3105e32 Corrected invocation of a large file test in the CMake system, when large file tests are enabled. 2013-08-28 09:38:43 -06:00
Ward Fisher
b6e4715104 Added fixes to CMake-based system, when building pnetcdf. 2013-08-26 13:50:27 -06:00
Ward Fisher
33d3d06971 Added initial 'make dist', 'make distcheck' support to 
CMake-based builds.
 2013-06-03 16:42:04 +00:00
Russ Rew
946a7ab8b5 Fix contributed by Nath Gopalaswamy to large file problem reading 
netCDF classic or 64-bit offset files that have a UINT32_MAX flag for
large last record size of a variable that has values larger than 1
byte.  This problem had previously been fixed for *writing* such data,
but was only tested with an ncbyte variable.  Fixed test to
demonstrate problem and the fix.

More updates to chunking documentation, cosmetic fixes for some
"--option=" documentation that doxygen turns into mdash.
 2013-05-31 20:18:18 +00:00
Dennis Heimbigner
c583f91992 merge with trunk and fix conflicts 2013-05-10 17:04:28 +00:00
Dennis Heimbigner
f17e7324c1 Rebuilt the compose operation in dceconstraints.c. The 
revisions are simpler, and I hope, clearer than the all
previous versions.  Part of the code taken from the
ucar.nc2.Range.compose function.  Modified to handle edge
cases not handled in the Range.compose function.
 2013-04-19 19:55:43 +00:00
Dennis Heimbigner
4e41843740 1) fix some minor bugs when pnetcdf is enabled 2)Comment out some apparently unused procedures 2013-03-25 17:12:50 +00:00
Dennis Heimbigner
dea3c726c8 merge trunk into this branch 2013-03-15 20:31:07 +00:00
Ward Fisher
ddf3c31bb0 Corrected a handful of syntax issues in CMake config files, 
probably introduced more.  

Added CMake-related files to Makefile.am files for inclusion
when creating a distribution package.
 2013-02-20 23:28:28 +00:00
Ward Fisher
49b144143d CMake fixes for enabling MMAP tests. 2013-02-14 20:24:02 +00:00
Ward Fisher
51848614c3 Corrected parallel support in CMake, including 
library checks and parallel IO tests.  Updated 
CMake-related documentation.
 2013-02-12 22:22:54 +00:00
Russ Rew
3ef3b35a94 Refactor to share functions between ncdump and nccopy. Merge nccopy 
enhancements, based on contributed code from Martin van Driel, to
support -v, -g, -V, and -G options for selecting groups and variables
in output.  Fix all clang warnings from nccopy and ncdump sources, as
well as a few other cleanup changes to testing code.
 2013-01-23 17:45:29 +00:00
Ward Fisher
91188cea7a Merging CMake branch into trunk. Changes include: 
CMake related changes in CMakeLists.txt files,
cmake_config.h.in. Other changes relate to 
Windows-specific issues, and changes made
when regenerating generated source files.
 2013-01-15 22:43:09 +00:00
Ward Fisher
cf0d0b54f2 Merged latest changes from cmake branch. Fixed a test file, and changed a deallocation call to avoid throwing an error on Windows related to cross-dll memory-management. 2012-12-07 23:21:27 +00:00
Ward Fisher
81280c7878 Merge from latest netcdf-cmake branch. 
- Fixes for Windows.
- CMake-based changes (functionality, tests).
- Smattering of coverity-informed bug-fixes.
 2012-12-05 18:35:42 +00:00
Ward Fisher
d0a665f83f Including .c files generated from .m4 to accomodate 
Windows users (who generally will lack m4).  This policy
can be re-evaluated if need be.
 2012-10-02 16:45:27 +00:00
Ward Fisher
c271c81ac4 2012-09-14 21:35:25 +00:00
Ward Fisher
235fc6bb13 Merged latest trunk into branch 2012-08-22 19:52:24 +00:00
Ward Fisher
5ebda8c08f Correcting an arithmetic error present in nc_test under gcc on Windows. 2012-08-22 19:19:04 +00:00