1. Issue https://github.com/Unidata/netcdf-c/issues/2043
* FreeBSD build fails because of conflicts in defining the fileno() function. So removed all extern declarations of fileno.
2. Issue https://github.com/Unidata/netcdf-c/issues/2124
* There were a couple of problems here.
* I was conflating msys with mingw and they need separate handling of paths. So treat mingw like windows.
* memio.c was not always writing the full content of the memory to file. Untested fix by properly accounting for zero size writes.
* Fix bug when skipping white space in tst_xcache.c
3. Issue https://github.com/Unidata/netcdf-c/pull/2105
* On MINGW, bash and other POSIX utilities use a mounted root directory,
but executables compiled for Windows do not recognise the mount point.
Ensure that Windows paths are used in tests of Windows executables.
4. Issue https://github.com/Unidata/netcdf-c/issues/2132
* Apparently the Intel C compiler on OSX defines isnan etc.
So disable declaration in dutil.c under that condition.
5. Fix and re-enable test_rcmerge.sh by allowing override of where to
look for .rc files
6. CMakeLists.txt suppresses certain ncdump directory tests because of differences in printing floats/doubles.
* Extend the list to include those that also fail under mingw.
* Suppress the mingw tests in ncdump/Makefile.am
Re: https://github.com/zarr-developers/zarr-python/pull/716
The Zarr version 2 spec has been extended to include the ability
to choose the dimension separator in chunk name keys. The legal
separators has been extended from {'.'} to {'.' '/'}. So now it
is possible to use a key like "0/1/2/0" for chunk names.
This PR implements this for NCZarr. The V2 spec now says that
this separator can be set on a per-variable basis. For now, I
have chosen to allow this be set only globally by adding a key
named "ZARR.DIMENSION_SEPARATOR=<char>" in the
.daprc/.dodsrc/ncrc file. Currently, the only legal separator
characters are '.' (the default) and '/'. On writing, this key
will only be written if its value is different than the default.
This change caused problems because supporting a separator of '/'
is difficult to parse when keys/paths use '/' as the path separator.
A test case was added for this.
Additionally, make nczarr be enabled default by default. This required
some additional changes so that if zip and/or AWS S3 sdk are unavailable,
then they are disabled for NCZarr.
In addition the following unrelated changes were made.
1. Tested that pure-zarr mode could read an nczarr formatted store.
1. The .rc file handling now merges all known .rc files (.ncrc,.daprc, and .dodsrc) in that order and using those in HOME first, then in current directory. For duplicate entries, the later ones override the earlier ones. This change is to remove some of the conflicts inherent in the current .rc file load process. A set of test cases was also added.
1. Re-order tests in configure.ac and CMakeLists.txt so that if libcurl
is not found then the other options that depend upon it properly
are disabled.
1. I decided that xarray support should be enabled by default for pure
zarr. In order to allow disabling, I added a new mode flag "noxarray".
1. Certain test in nczarr_test depend on use of .dodsrc. In order for these
to work when testing in parallel, some inter-test dependencies needed to
be added.
1. Improved authorization testing to use changes in thredds.ucar.edu
