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601 Commits

Author SHA1 Message Date
Ed Hartnett
7a18d361fb
Merge branch 'master' into ejh_udf 2018-05-22 07:19:10 -06:00
Dennis Heimbigner
02bd33f250 Merge branch 'dapparams.dmh' of https://github.com/Unidata/netcdf-c into dapparams.dmh 2018-05-19 16:11:24 -06:00
Dennis Heimbigner
5fc6be9472 Code duplicated; merge failure? 2018-05-18 20:28:51 -06:00
Ed Hartnett
bab5ef7549 fixed printf statement 2018-05-17 05:53:10 -06:00
Ed Hartnett
df60e5917a added test 2018-05-17 05:50:30 -06:00
Ed Hartnett
6c6c86ef96 added tests, cleaned up test 2018-05-17 05:45:51 -06:00
Ed Hartnett
33bf6147ce cleaned up comments 2018-05-16 03:29:08 -06:00
Ed Hartnett
40c552bd43 cleaned up nc4hdf5.c 2018-05-16 03:18:50 -06:00
Ed Hartnett
d8947c81ee cleaned up whitespace 2018-05-16 02:44:46 -06:00
Ed Hartnett
c0b4e96428 added parallel testing for string type 2018-05-16 02:27:07 -06:00
Ed Hartnett
37cae16b38 added parallel testing for string type 2018-05-16 02:26:13 -06:00
Ed Hartnett
3e79501c3e added parallel compound type test 2018-05-15 08:54:51 -06:00
Ed Hartnett
95e2d10347 fixed comment 2018-05-15 08:15:25 -06:00
Ed Hartnett
b8ad15b6ae tests for ncdump issue with irish rover 2018-05-15 08:09:52 -06:00
Ed Hartnett
942bc48181 test development 2018-05-14 14:25:56 -06:00
Ed Hartnett
984f112580 test development 2018-05-14 10:06:35 -06:00
Ed Hartnett
271abc6bcb added file 2018-05-14 08:49:13 -06:00
Ed Hartnett
fd23cb3cf2 cleanup makefile, develop test 2018-05-14 08:11:32 -06:00
Ed Hartnett
350946b1e0 user defined formats only if netcdf-4 is built 2018-05-13 16:03:04 -06:00
Ed Hartnett
2d0ef80cc4 added tests 2018-05-13 07:31:46 -06:00
Ed Hartnett
bc759bba58 added tests to confirm correct default chunksizes when fletcher32/shuffle are turned on 2018-05-12 09:48:13 -06:00
Ed Hartnett
03ea1056f4 now reject user-defined types for CLASSIC_MODEL netcdf-4 files 2018-05-12 08:26:48 -06:00
Ward Fisher
9f716a228f
Merge branch 'master' into inmemory.dmh 2018-05-04 16:15:22 -06:00
Dennis Heimbigner
9aa1e9a14e master merge 2018-05-03 21:02:12 -06:00
Ed Hartnett
6e25c75947
Merge branch 'master' into ejh_move_tests 2018-04-30 17:53:39 -06:00
luz.paz
74fbacdb82 Misc. source comment typos 
Some are user-facing. Found via `codespell` and through the downstream FreeCAD.
 2018-04-26 23:04:01 -04:00
Ed Hartnett
507717e803
Merge branch 'master' into ejh_move_tests 2018-04-26 18:47:48 -06:00
Dennis Heimbigner
ff212442f1 merge master and conflict resolve 2018-04-26 14:22:01 -06:00
Greg Sjaardema
09b0a76a01
Add missing ERR Macro 
The ERR macro was  missing from a couple tests.
 2018-04-25 09:54:31 -06:00
Ward Fisher
65f7dd0397
Merge branch 'master' into ejh_move_tests 2018-04-23 13:36:53 -06:00
Dennis Heimbigner
0a44d9ae3a Merge branch 'master' into inmemory.dmh 2018-04-23 11:30:14 -06:00
Ed Hartnett
1f9a78c6eb fixed distcheck problem 2018-04-23 03:29:37 -06:00
Ed Hartnett
b5e282996c moved tests 2018-04-23 03:19:11 -06:00
Dennis Heimbigner
d3b309722e re: gh issue https://github.com/Unidata/netcdf-c/issues/911 
I took Ed's advice and moved the plugin stuff to its own
top-level directory. This is an attempt to solve the problem of
copying files that we have experienced. In any case, it will
serve as a place to stick additional plugins.
 2018-04-21 20:10:47 -06:00
Ed Hartnett
f36ae96ee4
Merge branch 'master' into ejh_fill_test 2018-04-19 15:41:38 -06:00
Ward Fisher
9a1172fbb0 Replace quotes when including system includes, in support of https://github.com/Unidata/netcdf-c/issues/928 2018-04-18 10:51:03 -06:00
Ed Hartnett
48c92cbdc3
Merge branch 'master' into ejh_fill_test 2018-04-16 16:35:09 -06:00
Dennis Heimbigner
c66f1d53bb missing file 2018-04-14 12:01:52 -06:00
Ward Fisher
e2e2c2117f
Merge branch 'master' into index.dmh 2018-04-02 18:13:34 -06:00
Ed Hartnett
168340a8b6 added test for utf8 normalization for variable rename 2018-03-30 11:26:47 -06:00
Ed Hartnett
0e454a75c2 added fill mode test 2018-03-30 10:20:33 -06:00
Ed Hartnett
af79dfa14d new method of using valgrind 2018-03-28 13:54:05 -06:00
Dennis Heimbigner
1246dd189b merge master 2018-03-20 21:50:58 -06:00
Ward Fisher
36c4b7947d Merge branch 'master' into newhash1.dmh 2018-03-20 11:20:14 -06:00
Dennis Heimbigner
dc8c08f939 forgot to add files to repo 2018-03-17 19:09:49 -06:00
Dennis Heimbigner
cc136cad08 Add a configurable "test case" that will create 
and then open a file with a lot of metadata.
The test is configurable to determine the parameters
for the created metadata.
 2018-03-17 16:25:13 -06:00
Dennis Heimbigner
25f062528b This completes (for now) the refactoring of libsrc4. 
The file docs/indexing.dox tries to provide design
information for the refactoring.

The primary change is to replace all walking of linked
lists with the use of the NCindex data structure.
Ncindex is a combination of a hash table (for name-based
lookup) and a vector (for walking the elements in the index).
Additionally, global vectors are added to NC_HDF5_FILE_INFO_T
to support direct mapping of an e.g. dimid to the NC_DIM_INFO_T
object. These global vectors exist for dimensions, types, and groups
because they have globally unique id numbers.

WARNING:
1. since libsrc4 and libsrchdf4 share code, there are also
   changes in libsrchdf4.
2. Any outstanding pull requests that change libsrc4 or libhdf4
   are likely to cause conflicts with this code.
3. The original reason for doing this was for performance improvements,
   but as noted elsewhere, this may not be significant because
   the meta-data read performance apparently is being dominated
   by the hdf5 library because we do bulk meta-data reading rather
   than lazy reading.
 2018-03-16 11:46:18 -06:00
Ward Fisher
1e0cf1136c
Merge branch 'master' into ncpyfilter.dmh 2018-03-08 15:48:40 -07:00
Ed Hartnett
4e646e03f6 fixed cmake build file 2018-03-05 05:03:46 -07:00
Ed Hartnett
17f7a76356 moved HDF4 tests 2018-03-05 03:45:18 -07:00
Ward Fisher
c359a0e96a
Merge branch 'master' into newhash1.dmh 2018-03-04 22:40:51 -07:00
Dennis Heimbigner
7b324657d4
Merge branch 'master' into ncpyfilter.dmh 2018-03-02 19:49:43 -07:00
Dennis Heimbigner
dd4e71c150 1. Solve issue raised on netcdfgroup mailing list: 
https://www.unidata.ucar.edu/mailing_lists/archives/netcdfgroup/2018/msg00020.html
See docs/filters.md for a detailed description of the solution.
Basically we add nccopy flags "-F none" and "-F <varname>:none"
to suppress output compression as desired.

2. Add tests to nc_test4/tst_filter.sh to test out the solution.
 2018-03-02 16:55:58 -07:00
Ward Fisher
faad52041f Merge branch 'ejh_valgrind_removal_unidata_again' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into pr-aggregation2.wif 2018-03-02 14:22:42 -07:00
Ed Hartnett
49ebcc0e57 fixed problem of test file 2018-02-27 11:10:04 -07:00
Ed Hartnett
64e5742d88 added tst_bug324 to cmake build 2018-02-27 08:53:58 -07:00
Ed Hartnett
45329862a8 removed valgrind stuff 2018-02-27 08:36:12 -07:00
Dennis Heimbigner
8cb1fc4cfe This is the second step in refactoring the libsrc4 code. 
The first was branch newhash0.dmh.

As with newhash0.dmh, these changes should be transparent.
 2018-02-24 20:36:24 -07:00
Ward Fisher
a8faac9292
Merge branch 'master' into classic_ext_ncid 2018-02-22 17:15:34 -07:00
Ward Fisher
8e169175e4
Merge branch 'master' into newhash0.dmh 2018-02-22 14:55:31 -07:00
Ward Fisher
f9f27c5ab7
Merge branch 'master' into newhash0.dmh 2018-02-21 14:19:43 -07:00
Ed Hartnett
9de58cad99
Merge branch 'master' into ejh_extra_tests 2018-02-19 18:52:50 -07:00
Ed Hartnett
ca5f314fc0 minor test cleanup 2018-02-16 09:00:15 -07:00
Ed Hartnett
13fcc67d90
Merge branch 'master' into ejh_hdf4_dispatch_unidata2 2018-02-15 13:25:11 -07:00
Ed Hartnett
b0a8d4ee30 fixed merge issue 2018-02-14 07:58:50 -07:00
Ed Hartnett
41eb0f26c1
Merge branch 'master' into ejh_extra_tests 2018-02-13 15:48:35 -07:00
Ed Hartnett
e5cbf259ba fixed string memory leak 2018-02-13 14:17:15 -07:00
Ed Hartnett
cb4722a0cf fix for memory problem in tst_vars2.c 2018-02-13 13:49:29 -07:00
Ward Fisher
878b107d36 Corrected overflow error in support of https://github.com/Unidata/netcdf-c/issues/861 2018-02-13 12:18:06 -07:00
Ed Hartnett
dd41680f90 added rename test 2018-02-12 10:13:31 -07:00
Ed Hartnett
dbbd5094cb added rename test to CMakeLists.txt 2018-02-12 10:12:49 -07:00
Ed Hartnett
32e2798dde added rename test 2018-02-12 10:08:59 -07:00
Ed Hartnett
70d815b6c8 pulled in some attribute testing that got missed in recent merges 2018-02-12 08:33:20 -07:00
Dennis Heimbigner
727b613459 This is the initial step in moving to the new higher performance 
(I hope) metadata mechanism. This mostly just adds new pieces of
code (e.g. nclistmap) and does some minor fixes.

It should be transparent to everything else.
The next set of changes will be the big step.
 2018-02-08 19:53:40 -07:00
Ed Hartnett
bd77f8865b fixed tst_filter.sh for parallel builds 2018-02-08 07:20:40 -07:00
Ed Hartnett
2358d4a910 moved HDF4 to its own dispatch layer 2018-02-08 06:20:58 -07:00
Ward Fisher
5107655682 Accomodate Visual Studio 2018-02-06 13:32:30 -06:00
Ward Fisher
a640c034f2 Merge branch 'ejh_atts_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-05 11:47:48 -07:00
Ward Fisher
e0577cb251 Merge branch 'ejh_fill_value_string_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-05 11:47:34 -07:00
Ward Fisher
b268f268bd Merge branch 'ejh_dims_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-05 11:43:41 -07:00
Ed Hartnett
0d96ead703
Merge branch 'master' into ejh_dims_unidata 2018-02-05 06:34:04 -07:00
Ward Fisher
c12fca453e Merge branch 'ejh_rename2_unidata' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-02 17:57:32 -07:00
Ward Fisher
9b4b2308c6 Merge branch 'ejh_warnings' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into ejh_batch 2018-02-02 17:56:04 -07:00
Ed Hartnett
383a19161a fixed warnings 2018-02-01 07:36:34 -07:00
Ed Hartnett
2afe401f17 another rename fix 2018-02-01 05:10:57 -07:00
Ward Fisher
03446423f7 Merge branch 'patch-12' of https://github.com/gsjaardema/netcdf-c into gsjaardema-batch 2018-01-31 16:24:38 -07:00
Ward Fisher
9a0d1d6501 Merge branch 'patch-14' of https://github.com/gsjaardema/netcdf-c into gsjaardema-batch 2018-01-31 16:21:41 -07:00
Ward Fisher
8c33de7a9a Merge branch 'patch-15' of https://github.com/gsjaardema/netcdf-c into gsjaardema-batch 2018-01-31 16:17:59 -07:00
Greg Sjaardema
30ec6821c3
Missing ERR after api test call 
Missed this one on previous PR.  Another missing ERR after API test if.
 2018-01-31 10:08:48 -07:00
Greg Sjaardema
60a6f34102
Fix missing ERR after if test 
A couple API invocations were missing the ERR macro following the if test.
 2018-01-31 09:17:28 -07:00
Greg Sjaardema
2f44fa49c6
Eliminate unused variables 
Remove variables no longer used after recent refactorings.
 2018-01-31 09:05:35 -07:00
Greg Sjaardema
63b700c40c
Remove V2 code if V2 API not being built 
Remove test code that uses the version 2 API if the version 2 API code is not being activated in the build.

This was originally proposed in #656 with a better fix in #755 which was removed.
 2018-01-31 09:00:17 -07:00
Ed Hartnett
7c936a7bb6 brought in changes from ejh_att 2018-01-31 08:44:33 -07:00
Ed Hartnett
dff3472a2e comment change to trigger travis testing 2018-01-31 07:22:08 -07:00
Ed Hartnett
94c23712b7 extra tests, plus fill value fixes for string type 2018-01-30 14:39:47 -07:00
Ed Hartnett
333b802861 fix dim bad paramter issues 2018-01-30 09:35:56 -07:00
Dennis Heimbigner
d388f0e7f3 - Rename target logical name bzip2 in nc_test4/hdf5plugins in order to avoid 
cmake error CMP0002: duplicate name
- Assuming that all compilers treat floating point constants as double,
  remove d suffix from DBLVAL in nc_test4 and examples/C
 2018-01-25 19:33:23 -07:00
Wei-keng Liao
cb7aafa805 fix issue 791: validate ncid for classic files 2018-01-25 00:03:19 -06:00
Ward Fisher
7f1f02c96d Additional tweaks for make dist. 2018-01-24 18:05:30 -07:00
Ward Fisher
d0339c8902 Merge branch 'pr-catchup' into v4.6.0-release-branch 2018-01-24 15:51:24 -06:00