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658 Commits

Author SHA1 Message Date
Ed Hartnett
2024f0b823 removed unneeded var 2019-01-20 09:56:10 -07:00
Ed Hartnett
c6a9948a8e removed unneeded var, fixed broken log statements that cause segfaults 2019-01-20 09:37:13 -07:00
Ed Hartnett
029aa5f626 now using hidden coordinates att to speed file opens 2018-12-20 05:59:31 -07:00
Ed Hartnett
aa16d29e98 fixed comment 2018-12-17 08:43:19 -07:00
Ed Hartnett
e9bd94821d split out some var meta reading, fixed setting of var->container 2018-12-17 08:41:43 -07:00
Ed Hartnett
8ca5a1ac17
Merge branch 'master' into ejh_fast_var_prep 2018-12-12 07:05:45 -07:00
Ward Fisher
30ea33435c Merge remote-tracking branch 'origin/license_update.wif' into pr-aggregation.wif 2018-12-11 17:08:21 -05:00
Ed Hartnett
7d168f712f cleaned up nc4internal.c 2018-12-11 06:25:33 -07:00
Ward Fisher
763750fab5 More copyright stanza updates. 2018-12-06 14:56:42 -07:00
Ed Hartnett
f6443bce8f rest of separation of libhdf5 and libsrc4 2018-11-30 14:05:11 -07:00
Ed Hartnett
b5ed407e9f better handling of normalizing names in HDF5 atts 2018-11-30 13:28:18 -07:00
Ed Hartnett
433499771b moved special att reading function to libhdf5 2018-11-30 07:50:15 -07:00
Ed Hartnett
e55b9d697e separation of libhdf5 from libsrc4 2018-11-29 07:02:31 -07:00
Ed Hartnett
104b4b50fe clean up 2018-11-29 06:25:34 -07:00
Ed Hartnett
d51b221c62 move setting of var chunk cache to libhdf5 2018-11-29 06:10:39 -07:00
Ed Hartnett
1d7a9caad8 removed HDF5 finalize from libsrc4 code 2018-11-28 15:51:25 -07:00
Ed Hartnett
c824ad9ec9 further removal of libhdf5 code from libsrc4 2018-11-28 15:48:08 -07:00
Ed Hartnett
f9d3fff2c3 rest of removal of lazy att code from libsrc4 2018-11-26 11:11:56 -07:00
Ed Hartnett
016f675fad more separation of lazy att reads from libsrc4 2018-11-26 10:44:48 -07:00
Ed Hartnett
38a59a32f8 separation of lazy atts from libsrc4 2018-11-26 10:28:48 -07:00
Ed Hartnett
ba3bc50015 separation of lazy atts from libsrc4 2018-11-26 10:24:37 -07:00
Ed Hartnett
cc18944fa7 moved lazy atts handling for nc_inq_attid() 2018-11-26 09:58:31 -07:00
Ed Hartnett
8e7fc913cb moving lazy atts code to libhdf5 2018-11-26 08:24:18 -07:00
Ed Hartnett
1df4bb1762 moving lazy atts code to libhdf5 2018-11-26 08:21:32 -07:00
Ed Hartnett
6f969b0117 separate HDF5 initialization 2018-11-26 05:35:44 -07:00
Ed Hartnett
64b45b5e75 changes in support of separating HDF5 and libsrc4 2018-11-26 04:40:33 -07:00
Ed Hartnett
f6c3093fb3 moved convert function to libsrc4 2018-11-21 14:49:52 -07:00
Ed Hartnett
6bebb703a6 trying types again 2018-11-20 06:37:53 -07:00
Ed Hartnett
b5be30175d cleanup 2018-11-19 09:35:29 -07:00
Ed Hartnett
8fe3ee0dc4 clean up 2018-11-16 10:11:41 -07:00
Ed Hartnett
4c1b3a225b clean up 2018-11-16 10:07:54 -07:00
Ed Hartnett
8ae5ebf6bc remove unneeded params from function 2018-11-16 08:26:09 -07:00
Ed Hartnett
60a33b9e8b removed hdf5 stuff from NC_FIELD_INFO_T 2018-11-15 16:46:22 -07:00
Ed Hartnett
6a66ecd3d0 moving rest of var stuff 2018-11-13 17:03:11 -07:00
Ed Hartnett
4045588516 removing hid_t from NC_VAR_INFO_T 2018-11-13 16:10:34 -07:00
Ed Hartnett
f6def4a089 moving some fill value handling to libhdf5 2018-11-13 15:37:49 -07:00
Ed Hartnett
ce43b7d772 free hdf5-specific var info and cleanup 2018-11-13 05:58:54 -07:00
Ed Hartnett
578ddb2a28 cleaning up nc4internal.h 2018-11-13 05:27:46 -07:00
Ed Hartnett
6b75bb483b allocating HDF5-specific group info struct for root group 2018-11-12 09:02:46 -07:00
Ed Hartnett
9364157a9b allocating and freeing memory for HDF5-specific group info 2018-11-12 08:11:06 -07:00
Ed Hartnett
8aabd2020c moving HDF5 dim fields to hdf5internal.h from nc4internal.h 2018-11-08 07:09:11 -07:00
Ed Hartnett
7e4138a11c comment 2018-11-07 14:26:08 -07:00
Ed Hartnett
11d725facc allocating and freeing memory for hdf5-specific attribute info 2018-11-07 13:45:51 -07:00
Ed Hartnett
5f36a3b425 merged master 2018-11-02 10:00:53 -06:00
Dennis Heimbigner
245961de00 re: github issues 
https://github.com/Unidata/netcdf-c/issues/1168
    https://github.com/Unidata/netcdf-c/issues/1163
    https://github.com/Unidata/netcdf-c/issues/1162

This PR partially fixes memory leaks in the netcdf-c library,
in the ncdump utility, and in some test cases.

The netcdf-c library now runs memory clean with the assumption
that the --disable-utilities option is used. The primary remaining
problem is ncgen. Once that is fixed, I believe the netcdf-c library
will run memory clean with no limitations.

Notes
-----------
1. Memory checking was performed using gcc -fsanitize=address.
   Valgrind-based testing has yet to be performed.
2. The pnetcdf, hdf4, and examples code has not been tested.

Misc. Non-leak changes
1. Make tst_diskless2 only run when netcdf4 is enabled (issue 1162)
2. Fix CmakeLists.txt to turn off logging if ENABLE_NETCDF_4 is OFF
3. Isolated all my debug scripts into a single top-level directory
   called debug
4. Fix some USE_NETCDF4 dependencies in nc_test and nc_test4 Makefile.am
 2018-10-30 20:48:12 -06:00
Ed Hartnett
1d952cb43a clean up 2018-10-23 07:52:11 -06:00
Ed Hartnett
be4fe7a921 clean up 2018-10-23 07:41:16 -06:00
Ed Hartnett
c2cb3379f4 doing HDF5 closing in libhdf5 2018-10-23 06:59:22 -06:00
Ed Hartnett
35cfaefc0c closing HDF5 objects separately 2018-10-23 05:39:00 -06:00
Ed Hartnett
6589867154 clean up var_free 2018-10-23 05:07:52 -06:00