Commit Graph

164 Commits

Author SHA1 Message Date
Dennis Heimbigner
272e6f4022 Oops, forgot to test nc3 only.
Fixed some errors from that case.
2016-05-07 14:32:07 -06:00
Dennis Heimbigner
11a259ad86 Add provenance info for netcdf-4 files.
This consists of a persistent attribute named
_NCProperties plus two computed attributes
_IsNetcdf4 and _SuperblockVersion.
See the 'Provenance Attributes' section
of docs/attribute_conventions.md for details.
2016-05-07 14:32:07 -06:00
Dennis Heimbigner
45572f5971 Fix github issue: https://github.com/Unidata/netcdf-c/issues/208
Return an error when specifying deflation (compression) or fletcher32 on
a file created for parallel IO in netcdf-4.
2016-02-01 16:15:58 -07:00
Dennis Heimbigner
39e9cd0ffe Fix issues with Github pull request 187
(https://github.com/Unidata/netcdf-c/pull/187)
Primary problem was cmake build errors.
2016-01-08 12:55:11 -07:00
Dennis Heimbigner
8e6beda671 NetCDF-c Github issue #178
NetCDF-c Github issue #178 / esupport BNL-694121

The ncgen man pages says:
> Note also that the words variable',dimension', data',group', and
> `types' are legal CDL names, but be careful that there is a space be-
> tween them and any following colon character when used as a variable
> name. This is mostly an issue with attribute declarations.

Ncdump does not obey this rule.
The fix is to modify ncdump/ncdump.c to check if a variable name is
a keyword.

Also added test case.
2015-12-26 18:19:04 -07:00
dmh
47e10591b4 ckp 2015-11-19 13:44:55 -07:00
dmh
413e49d758 1. There were several bugs in ncdump/dumplib.c
that were not taking the CDF-5 format into account.

2. Had to update ncgen.1 man page to define the new
   k-flag rules to deal with cdf-5.

3. Had to fix some tests that use 'cmp' for comparison;
   this really should be deprecated.

3. There was a bug in configure.ac with respect
   to using the enable-netcdf-4 flag vs
   using disable-netcdf-4.
2015-11-06 17:03:28 -07:00
Ward Fisher
612b35a84c Merge branch 'master' into cdf-5, in preparation for merging the CDF-5 functionality into the master branch. This will be the key new feature for netcdf 4.4.0. 2015-11-05 13:40:35 -07:00
Dennis Heimbigner
cd7a06b193 pull request 2015-10-12 17:09:37 -06:00
dmh
39ccdc5ee3 conflicts 2015-10-11 13:43:19 -06:00
dmh
ed57a337ec add ptrdiff_t checks 2015-10-11 13:35:44 -06:00
Dennis Heimbigner
554034b712 1. Added temporary work-around for cygwin where
AC_CHECK_SIZEOF is not working because anti-virus
   will not allow very rapid creation/deletion of a
   file with same name.
2. modified some test baselines to attempt to fix
   Ward's issue
2015-10-09 10:33:40 -06:00
dmh
9f65c3b808 cleanup and squash changes vav master 2015-10-09 10:26:49 -06:00
dmh
58d486f0ac ckp 2015-10-09 10:23:21 -06:00
dmh
8fc86035b2 merge-squash 2015-10-09 10:22:00 -06:00
Dennis Heimbigner
dccbc87d24 1. Added temporary work-around for cygwin where
AC_CHECK_SIZEOF is not working because anti-virus
   will not allow very rapid creation/deletion of a
   file with same name.
2. modified some test baselines to attempt to fix
   Ward's issue
2015-10-09 10:14:45 -06:00
dmh
087ae58ffd cleanup and squash changes vav master 2015-10-09 10:12:11 -06:00
dmh
5f3088185d ckp 2015-10-09 10:12:11 -06:00
dmh
49597a64af merge-squash 2015-10-09 10:12:11 -06:00
dmh
5b89b22021 missing include file 2015-09-18 11:11:57 -06:00
Dennis Heimbigner
a1be2456eb 1. Added temporary work-around for cygwin where
AC_CHECK_SIZEOF is not working because anti-virus
   will not allow very rapid creation/deletion of a
   file with same name.
2. modified some test baselines to attempt to fix
   Ward's issue
2015-09-15 15:18:59 -06:00
dmh
b8f0522c91 add experimental stdio based ncio module 2015-08-19 17:14:13 -06:00
dmh
2bfe9bba32 cleanup and squash changes vav master 2015-08-16 21:44:18 -06:00
dmh
4d82140a5b ckp 2015-08-16 14:54:35 -06:00
dmh
859f105005 merge-squash 2015-08-15 16:26:35 -06:00
dmh
dbc7215063 1. fix nc_open_mem doxygen description
2. fix some bugs wrt to cygwin vs linux.
3. add to RELEASE_NOTES
4. try to fix tst_inmemory fd error by putting the first
   arg to dotest in quotes.
2015-05-28 19:23:33 -06:00
dmh
be5e3cd606 1. Allow for the user specified rc file via the env variable
DAPRCFILE.  Note that the value of this environment
   variable should be the absolute path of the rc file, not
   the path to its containing directory.
2. fixup testauth.sh and add some new tests
3. synch oc
2015-05-24 17:31:39 -06:00
dmh
8673e66640 A couple of docs/ .dox files have apparently
been converted to .md.
2015-04-16 16:44:51 -06:00
dmh
06a11e51df 1. Allow for the user specified rc file via the env variable
NCRCFILE.  Note that the value of this environment
   variable should be the absolute path of the rc file, not
   the path to its containing directory.
2015-03-03 20:17:27 -07:00
dmh
88f1ac820c 1. synch with oc lib
2. update to add docs/auth.md
2015-03-02 20:26:39 -07:00
dmh
65f78d6a8b 1. synch with oc
2. replace all occurrences of
   'template' with 'pattern'
   since template is reserved in windows.
2015-01-15 14:19:51 -07:00
dmh
f423f27693 Sync with oc project.
This supports better authorization
handling for DAP requests, especially redirection
based authorization. I also added a new test case
ncdap_tests/testauth.sh.

Specifically, suppose I have a netrc file /tmp/netrc
containing this.
    machine uat.urs.earthdata.nasa.gov login xxxxxx password yyyyyy
Also suppose I have a .ocrc file containing these lines
    HTTP.COOKIEJAR=/tmp/cookies
    HTTP.NETRC=/tmp/netrc
Assume that .ocrc is in the local directory or HOME.

Then this command should work (assuming a valid login and password).
    ncdump -h "https://54.86.135.31/opendap/data/nc/fnoc1.nc"
2014-12-24 10:22:47 -07:00
dmh
7de1f7bef8 oc synch 2014-11-30 20:30:23 -07:00
dmh
d67d00ca7e re NCF-319
The pnetcdf support was not
properly being used to provide
mpi parallel io for netcdf-3 classic
files. The wrong dispatch table was being
used.  The fix was to modify
dfile.c#NC_check_file_type to properly
specify the pnetcdf dispatch table when
use_parallel was true.
2014-10-13 14:33:06 -06:00
dmh
31d15ec532 re: NCF-317
If the netCDF-C library is built with the
HDF5 library but without the HDF4 library and one attempts
to open an HDF4 file, an abort occurs rather than returning
a proper error code (NC_ENOTNC).
Fix is to modify dfile.c#NC_check_file_type to properly
#ifdef relevant tests.
2014-10-07 12:37:41 -06:00
dmh
7ea62784ce Added XFAIl redirect tesst to t_auth.c 2014-07-29 11:04:29 -06:00
Dennis Heimbigner
641c982c8c synch with git/oc 2014-06-26 16:40:08 -06:00
dmh
4de1b58df2 [NCF-272]
There was a problem with the
distcheck testing since the test input files
are in ${src_dir} and the test is in ${build_dir}.
So modify run_chunk_hdf4 to copy as necessary.
2014-05-31 13:54:52 -06:00
Dennis Heimbigner
4ae47ad45b jna? 2014-04-21 10:13:27 -06:00
Dennis Heimbigner
b3a7ccb3d4 more jna fixes 2014-04-10 19:48:53 -06:00
Dennis Heimbigner
464d5fc8bb 1. Add then remove some debugging info
for testing jna
2. add some personal scripts (*jna)
   to support creating jna dlls.
2014-04-03 15:46:12 -06:00
Dennis Heimbigner
4e68a3b8d3 add some jna personal scripts 2014-03-29 13:35:52 -06:00
dmh
a1f8d0a761 turn on tst_auth 2014-03-10 16:40:52 -06:00
dmh
1b941d342d 1. Attempted to reduce the number of conversion errors
when -Wconversion is set. Fixed libdispatch, but
   rest of netcdf remains to be done.
2014-03-09 15:51:45 -06:00
dmh
a189b98b0b 1. Any test that references nctestserver/NC_findtestserver
should be under ENABLE_DAP_REMOTE_TESTS.
   Fixed to make sure that this is so.
   Also attempted to fix ncdap_test/CMakeLists.txt,
   but probably got it wrong.
   HT to Nico Schlomer.
2. Attempted to reduce the number of conversion errors
   when -Wconversion is set. Fixed oc2, but
   rest of netcdf remains to be done.
   HT to Nico Schlomer.
3. When doing #2, I discovered an error in ncgen.y
   that has remained hidden. This required some other
   test case fixes.
2014-03-08 20:41:30 -07:00
dmh
e3545bf88d 1. Allow files to be opened by name multiple
times, but returning the same ncid.
2. Separate out the dap auth tests
   and make them disabled by default.
3. turn of ncdap_test/test_varm3 until
   we can find a copy of coads_climatology.nc
2014-03-07 12:04:38 -07:00
dmh
dfc3749506 [NCF-282]/ HAD-595112
The code that tests if a path is a url is
faulting when the url does not end in a slash
(e.g. http://thredds-tests.ucar.edu).
The code that tests if a path is a url is
faulting when the url does not end in a slash
(e.g. http://thredds-tests.ucar.edu).
CF-273]/HZY-708311

Solution was to do a null pointer test.
Added a test (tst_misc).
2014-01-20 16:11:45 -07:00
dmh
582410a407 [NCF-273]/HZY-708311
Add a new function called nc_inq_format_extended that
returns more detailed format information (vis-a-vis
nc_inq_format) about an open dataset.

Note that the netcdf API will present the file as if it had
the format specified by nc_inq_format.  The true file
format, however, may not even be a netcdf file; it might be
DAP, HDF4, or PNETCDF, for example. This function returns
that true file type.  It also returns the effective mode for
the file.

signature: nc_inq_format_extended(int ncid, int* formatp, int* modep)
where
* ncid is the NetCDF ID from a previous call to nc_open() or
  nc_create().
* formatp is a pointer to a location for returned true format.
* modep is a pointer to a location for returned mode flags.

Refer to the actual list in the file netcdf.h to see the
currently defined set.

Also added test cases (tst_formatx*).
2013-12-22 12:53:20 -07:00
dmh
cc95bd3d47 1. [NCF-276]/XXI-796914
Columbia server does not serve up proper
   opendap DDS replies. The Dataset {...} name
   changes depending on if the request has certain
   kinds of constraints.
   Code for a hack was not being used, so restore it.
   The fix is to effectively ignore differences in
   Dataset node names if the code is coming from
   columbia.edu.

2. [NCF-278]
   The ncgen code is improperly typing int64 integer constants
   as uint64.

3. [NCF-279]
   Empty string constants were not being properly
   filled when their target array is length 1 or more.
2013-11-17 14:26:14 -07:00
dmh
baed147ba4 [NCF-277]
Fix Http Basic Authorization.
The problem is really in oc2.0.
In order for it to work,
the CURLOPT_COOKIEJAR must have
a non-null value. The code
was already there, but not being
used for some reason.
1. fixed cookiejar code in oc2.0
2. synched oc2.0 with netcdf-c/oc2
3. added a test case
2013-11-15 11:38:54 -07:00