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381 Commits

Author SHA1 Message Date
Ward Fisher
c825d612c2 Tweaked some tests so that everything would pass when netcdf4 was disabled. 2015-10-22 14:09:19 -06:00
Ward Fisher
519a56019f Merge branch 'fix-typos' of https://github.com/tbeu/netcdf-c into tbeu-fix-typos 2015-10-16 14:16:09 -06:00
Dennis Heimbigner
cd7a06b193 pull request 2015-10-12 17:09:37 -06:00
Dennis Heimbigner
554034b712 1. Added temporary work-around for cygwin where 
AC_CHECK_SIZEOF is not working because anti-virus
   will not allow very rapid creation/deletion of a
   file with same name.
2. modified some test baselines to attempt to fix
   Ward's issue
 2015-10-09 10:33:40 -06:00
dmh
8fc86035b2 merge-squash 2015-10-09 10:22:00 -06:00
Dennis Heimbigner
dccbc87d24 1. Added temporary work-around for cygwin where 
AC_CHECK_SIZEOF is not working because anti-virus
   will not allow very rapid creation/deletion of a
   file with same name.
2. modified some test baselines to attempt to fix
   Ward's issue
 2015-10-09 10:14:45 -06:00
dmh
49597a64af merge-squash 2015-10-09 10:12:11 -06:00
Dennis Heimbigner
a1be2456eb 1. Added temporary work-around for cygwin where 
AC_CHECK_SIZEOF is not working because anti-virus
   will not allow very rapid creation/deletion of a
   file with same name.
2. modified some test baselines to attempt to fix
   Ward's issue
 2015-09-15 15:18:59 -06:00
dmh
0a7ff043a2 re: Jira NCF-320 
Partially resolve by making
string variables and attributes use
UTF-8 encoding.
Normalization is not necessarily fixed,
however.
 2015-08-20 15:53:48 -06:00
tbeu
e2820e4d8a Fix common typos 
Detected by https://github.com/vlajos/misspell_fixer
 2015-08-20 11:42:05 +02:00
Russ Rew
495fea71b9 Fix builddir vs srdir problem for ncdump/ctest.c and ctest64.c 2015-08-18 16:10:18 -06:00
dmh
859f105005 merge-squash 2015-08-15 16:26:35 -06:00
Ward Fisher
26be22c7db Made the sed statement more specific to avoid problems on non-windows systems. 2015-08-11 11:52:48 -06:00
Ward Fisher
f00b1e8f6f Added a touch of post-processing to make a shell script test work on Windows. 2015-08-11 11:48:49 -06:00
Russ Rew
a62c9d3059 Fix conflicts after merge 2015-08-02 17:29:36 -06:00
Russ Rew
2e029a3058 More cleanups from clang warnings. 2015-08-02 17:23:32 -06:00
Russ Rew
0687dfe5a2 Cleanup clang warnings. 2015-08-02 17:22:50 -06:00
Russ Rew
ec89eb5806 Fix ncdump clang warnings. Fix invalid encodings for some non-ascii strings in tests. 2015-08-02 16:09:47 -06:00
Russ Rew
3d5be0b3f0 Fix NCF-339, ncdump -x omits exponent char in XML double attribute value 2015-08-02 08:54:29 -06:00
Ward Fisher
f8e2d21663 Corrected a potential resource leak. Coverity ID: 1302447 2015-07-29 14:49:05 -06:00
Russ Rew
374a7550c4 Better fix for NCF-336 2015-07-14 10:00:40 -06:00
Ward Fisher
90ff3b728a Corrected a few things to work with MSVC. 2015-06-01 15:26:58 -06:00
Ward Fisher
5d15a332f0 Fixed a typo in the tst_inmemory script. From http://www.tldp.org/LDP/abs/html/io-redirection.html, '&>' redirects both stdout and stderr to filename, whereas '>&' is used with file descriptor handles, e.g. '1>&2'. 2015-06-01 13:07:16 -06:00
Ward Fisher
0cb9631b5c Added ncdump test tst_inmemory into CMake config file. 2015-06-01 12:26:40 -06:00
dmh
a763a5d71d add more debug info to ncdump 2015-05-29 16:04:22 -06:00
dmh
dbc7215063 1. fix nc_open_mem doxygen description 
2. fix some bugs wrt to cygwin vs linux.
3. add to RELEASE_NOTES
4. try to fix tst_inmemory fd error by putting the first
   arg to dotest in quotes.
 2015-05-28 19:23:33 -06:00
dmh
3dd807a155 The original mem branch somehow got 
hosed, so I rebuilt it as a new mem2 branch.
 2015-05-28 15:10:10 -06:00
Ward Fisher
28908d9cfe Modified some tests to work on Windows when a bash shell is available. 2015-04-22 15:47:19 -06:00
Ward Fisher
c366bec8b3 Activated a couple new tests on MSVC builds when bash is available. 2015-04-20 16:06:20 -06:00
Ward Fisher
fa2818863a Changed how several tests are built/invoked. 2015-04-20 13:54:17 -06:00
Ward Fisher
1fe58bde2d Added tst_netcdf4, tst_h_rdc0 to CMake build system. 2015-04-20 13:18:24 -06:00
Ward Fisher
88a012651a Wired tst_nccopy4.sh into cmake. 2015-04-20 13:15:02 -06:00
Ward Fisher
c4511e2ed2 Wired fillbug into cmake. 2015-04-20 13:08:26 -06:00
dmh
f9edce92ed make testauth be under the enable-auth-tests 2015-03-03 21:01:43 -07:00
dmh
06a11e51df 1. Allow for the user specified rc file via the env variable 
NCRCFILE.  Note that the value of this environment
   variable should be the absolute path of the rc file, not
   the path to its containing directory.
 2015-03-03 20:17:27 -07:00
Ward Fisher
ae4d54bcc6 Added stray .nc file to CLEANFILES 2015-02-12 13:34:39 -07:00
Ward Fisher
e56c67a772 Added an assertion, although I'm not convinced it's strictly needed, it is for safety now. Will assess whether it can be reached (at a glance it's not reachable, but static analysis says it is) or not. Will update as needed. 2015-02-11 13:29:40 -07:00
Russ Rew
b56cd87284 fix array size in test program 2015-02-05 16:56:15 -07:00
Ward Fisher
3582812bf0 Added tst_bug324 to CMake-based builds, but it is failing for some reason. Will investigate shortly. 2015-02-04 14:11:20 -07:00
Ward Fisher
e2a56efa9c Merge branch 'NCF-324' of https://github.com/qkoziol/netcdf-c into qkoziol-NCF-324 2015-02-04 09:54:17 -07:00
Ward Fisher
01793b4098 Reversed an edit made when working on Visual Studio/bash compatibility. 2015-02-03 12:39:41 -07:00
Ward Fisher
fc97546113 Updated nc-config.cmake.in to work with Windows-style paths. Further changes to get shell scripts running in Windows, when bash is available. 2015-02-02 14:46:51 -07:00
Ward Fisher
2d72b7ca7f More work on getting the shell scripts working properly with cmake under MSYS. 2015-02-02 14:46:50 -07:00
Ward Fisher
f9d3718739 Updated shell script to work on Windows. 2015-02-02 14:46:50 -07:00
Ward Fisher
b1d3304bee Removed a shell test when using visual studio. The test script manually invokes the compiler gcc. 2015-02-02 14:46:50 -07:00
Ward Fisher
33ec07444f Removed non-portable byte-length checks. Left files being generated, as they may be required by other tests. 2015-02-02 14:46:50 -07:00
Ward Fisher
e3125a5ac9 Work progresses, but have encountered an issue. See https://github.com/Unidata/netcdf-c/issues/103. 2015-02-02 14:46:50 -07:00
Ward Fisher
fe1b96cdd9 Updated CMakelists to remove debug, release subdirectories on Windows. Updating shell scripts to work with MSYS paths. 2015-02-02 14:46:50 -07:00
Quincey Koziol
4f8898719a NCF-324: Make similar change to get_vara code, and add in test to Makefile.am 2015-02-02 08:51:00 -06:00
Russ Rew
0f17bc9792 Add test for fix of bug NCF-324, but don't wire it in to run yet 2015-01-30 14:04:50 -07:00
Bas Couwenberg
43fec3de42 Fix another hyphen-used-as-minus-sign issue in nccopy.1 man page. 
Most of these issues were fixed in #101, but the patch included in the Debian
package was updated afterwards to include this remaining issue.
 2015-01-25 19:20:00 +01:00
Nico Schlömer
6d2b61ddb7 hyphens used as minus signs 2015-01-16 13:12:11 +01:00
Russ Rew
f16790b718 Add test CDL file and tst_nccopy4.sh test for fix of NCF-321 2015-01-03 17:18:14 -07:00
Russ Rew
e10bce8637 Fix bug ncf-321, requiring chunk size for unlimited dimension instead of providing default 2015-01-02 07:09:16 -07:00
Russ Rew
4eefcd4707 Typos and consistency fixes in docs 2014-12-29 14:22:26 -07:00
Russ Rew
9a60dc612f Use short "-k" codes instead of deprecated version numbers for ncgen and nccopy tests 2014-12-28 22:42:05 -07:00
Russ Rew
e157810c90 make nccopy.1 more consistent with ncgen.1 2014-12-28 21:18:37 -07:00
Russ Rew
abce64d32e Replace short format names to match new docs, fix comments 2014-12-17 09:56:16 -07:00
Russ Rew
40a7398b21 Added nccopy -kind_code documentation and deprecated -k format_number, need to do the same for ncgen 2014-12-13 19:50:21 -07:00
Russ Rew
d4ba81d6ff Documentation changes for ncdump numeric format code options 2014-12-10 10:49:37 -07:00
Russ Rew
eaf8ef61e0 resolved conflict 2014-12-09 13:31:20 -07:00
Russ Rew
7121a5dd73 Cleaned up deprecated -k n option messages and comments 2014-12-05 15:36:01 -07:00
Russ Rew
2640c0c9e3 Add numeric options (-3, -4, -6, -7) for output format, deprecating 
equivalent -k N options.
 2014-12-05 12:26:42 -07:00
dmh
31d15ec532 re: NCF-317 
If the netCDF-C library is built with the
HDF5 library but without the HDF4 library and one attempts
to open an HDF4 file, an abort occurs rather than returning
a proper error code (NC_ENOTNC).
Fix is to modify dfile.c#NC_check_file_type to properly
#ifdef relevant tests.
 2014-10-07 12:37:41 -06:00
Ward Fisher
85e8e7e945 Addressed man page syntax warnings reported in github issue 52, https://github.com/Unidata/netcdf-c/issues/52 2014-10-03 10:46:02 -06:00
Ward Fisher
21eaec9583 corrected an undefined value error identified by clang. 2014-10-02 12:43:27 -06:00
dmh
2e20b700af Forgot to update cmake wrt to directory name changes 2014-09-19 12:43:39 -06:00
dmh
7e582ad3f2 re: Jira NCF-309 
The code for handling character constants
in datalists in ncgen has some problems.
1. It failed on large constants
2. It did not handle e.g. var = 'a', 'b', ...
   in the same way that ncgen3 did.
3. The code for generate.c and genchar.c needed
   some refactoring to make it a little simpler
   (but not simple).
 2014-09-18 18:26:06 -06:00
Russ Rew
c5237736e4 For nccopy, added version info in usage printout. 2014-08-26 14:05:47 -06:00
Ward Fisher
b43813d821 When using the '-ansi' flag with gcc, netcdf would fail to build because of the use of '//' for one-line comments. I've addressed this by replacing instances of // with enclosing comment blocks. 2014-08-26 11:19:32 -06:00
Ward Fisher
3af9240acb More cleaning up for release. 2014-08-25 16:39:45 -06:00
Ward Fisher
df8caaf1d5 Corrected an error with a missing reference file. 2014-08-25 14:32:05 -06:00
Ward Fisher
6c071be031 Corrected issues where functions were not available in Windows. Specifically strndup. Also accomodated an included needed for getcwd. 2014-08-07 17:03:27 -06:00
Russ Rew
720e4ea82c Fixed bug NCF-310 (ncdump char vars with multiple unlimited dims). 
Added associated tests and entry in RELEASE_NOTES.
 2014-08-07 14:35:29 -06:00
dmh
cd2574ba7c Change assertion failure to a error 2014-07-23 11:25:49 -06:00
Ward Fisher
7f812b367e Manual merge of pull request https://github.com/Unidata/netcdf-c/pull/64 contributed by nschloe. Assorted CMake improvements. 2014-06-11 15:51:31 -06:00
Ward Fisher
d2e643429b Changed invocation of cmake from absolute to relative. 2014-06-06 13:57:02 -06:00
dmh
83ec39f5db [NCF-272] 
re: e support ZCL-340681 and CPW-270700

HDF4 supports compression (and chunking)
but the chunking was not being recorded
for HDF4 files. So, I modified the necessary
files to support HDF4 chunking.
 2014-06-02 13:04:28 -06:00
Ward Fisher
cd30a9e570 Corrected several static analysis errors related to uninitialized variables. 2014-04-22 16:11:37 -06:00
Ward Fisher
733f6257b0 Updating cmake shared_linker_flags as suggested by Nico Schlomer: https://github.com/Unidata/netcdf-c/issues/46 
Fixed indentation.

Updated .gitignore.

Added a macro to make it easy to check to see if the linker supports a particular flag.  Debug builds now pass the -w1,--no-undefined if it is detected the linker supports it.
 2014-04-02 15:54:05 -06:00
Ward Fisher
bb84fda8cf Removed a couple of clang-reported potential dereferences of null/undefined pointers. 2014-03-31 09:56:39 -06:00
Russ Rew
b22181768d Fix a few coverity warnings. 2014-03-28 22:03:10 -06:00
Russ Rew
9d86610739 Fix Jira ticket NCF-295, nccopy -d0 shuffle and chunking issues 2014-03-23 17:25:45 -06:00
Russ Rew
d774e23bc1 Fix -d0 option to not do unwanted chunking or associated shuffle. 
Add -c '/' option to specify changing layout for all variables from chunked to contiguous.
Fix logic for chunking and compression depending on input and output formats.
 2014-03-21 12:34:19 -06:00
Ward Fisher
8d5d592a18 Added tst_bom.sh to EXTRA_DIST, fixing a failure in 'make dist'. 2014-03-13 10:33:03 -06:00
dmh
a1f8d0a761 turn on tst_auth 2014-03-10 16:40:52 -06:00
dmh
1b941d342d 1. Attempted to reduce the number of conversion errors 
when -Wconversion is set. Fixed libdispatch, but
   rest of netcdf remains to be done.
 2014-03-09 15:51:45 -06:00
dmh
2bc36f2bc1 conflict resolution 2014-03-08 20:43:18 -07:00
dmh
a189b98b0b 1. Any test that references nctestserver/NC_findtestserver 
should be under ENABLE_DAP_REMOTE_TESTS.
   Fixed to make sure that this is so.
   Also attempted to fix ncdap_test/CMakeLists.txt,
   but probably got it wrong.
   HT to Nico Schlomer.
2. Attempted to reduce the number of conversion errors
   when -Wconversion is set. Fixed oc2, but
   rest of netcdf remains to be done.
   HT to Nico Schlomer.
3. When doing #2, I discovered an error in ncgen.y
   that has remained hidden. This required some other
   test case fixes.
 2014-03-08 20:41:30 -07:00
Russ Rew
cfae3cb196 Merge branch 'master' of https://github.com/Unidata/netcdf-c 2014-03-08 16:37:21 -07:00
Russ Rew
8bcd127084 Added execute bit to ncdump/tst_bom.sh script. 2014-03-08 16:35:43 -07:00
Ward Fisher
8f524289f8 Fixed issue in CMakeLists.txt related to how the 'bom' test executable was being built. 2014-03-08 16:06:13 -07:00
dmh
baade3e4fc [NCF-293] 
Allow .cdl files to have a leading utf-8 BOM.
Also add test.
 2014-03-07 22:52:40 -07:00
dmh
e3545bf88d 1. Allow files to be opened by name multiple 
times, but returning the same ncid.
2. Separate out the dap auth tests
   and make them disabled by default.
3. turn of ncdap_test/test_varm3 until
   we can find a copy of coads_climatology.nc
 2014-03-07 12:04:38 -07:00
Russ Rew
cb1e4471b5 Removed doxygen man page, since it now is in the User Guide. 2014-03-06 21:15:00 -07:00
Russ Rew
8e59dc3ce8 Merge branch 'master' of https://github.com/Unidata/netcdf-c 
Conflicts:
	ncdump/nccopy.c
 2014-03-06 21:12:48 -07:00
Russ Rew
dac98c89b5 Typo fixes in install doc. Document nccopy chunk threshold. 2014-03-04 15:03:49 -07:00
Ward Fisher
805a6f5b58 Removed a stray character that caused the build to fail. 2014-03-03 12:24:36 -07:00
Ward Fisher
700a0bf848 Reorganizing NetCDF User's guide document. 2014-03-03 11:29:46 -07:00
Ward Fisher
f6a969cfd5 Updated and consolidated some redundant documentation. 2014-02-25 17:08:04 -07:00