Commit Graph

52 Commits

Author SHA1 Message Date
Edward Hartnett
21d2458afe fixed HDF4 use of contiguous 2020-03-08 07:28:30 -06:00
Dennis Heimbigner
b488c272d5 Fix conflicts with master 2020-02-27 14:06:45 -07:00
Dennis Heimbigner
44d0dcaad2 Add support for multiple filters per variable.
re: https://github.com/Unidata/netcdf-c/issues/1584

Support has been added for multiple filters per variable.  This
affects a number of components in netcdf. The new APIs are
documented in NUG/filters.md.

The primary changes are:
* A set of new functions are provided (see __include/netcdf_filter.h__).
    - Obtain a list of the filters associated with a variable
    - Obtain the parameters for a specific filter.
* The existing __nc_inq_var_filter__ function now returns info
  about the first defined filter.
* The utilities (ncgen, ncdump, and nccopy) now support
  an extended format for specifying a sequence of filters.
  The general form is __<filter>|<filter>..._.
* The ncdump **_Filter** attribute now dumps a list of all the
  filters associated with a variable using the above new format.
* Filter specifications can now use a filter name instead of number
  for filters known to the netcdf library, which in turn is taken
  from the HDF5 filter registration page.
* New errors are defined: NC_EFILTER and NC_ENOFILTER. The latter
  is returned if an attempt is made to access an unknown filter.
* Internally, the dispatch table has been extended to add a function
  to handle all of the filter functions.
* New, filter-related, tests were added to nc_test4.
* A new plugin was added to the plugins directory to help with testing.

Notes:
1. The shuffle and fletcher32 filters are not part of the multifilter system.

Misc. changes:
1. A debug module was added to libhdf5 to help catch error locations.
2020-02-16 12:59:33 -07:00
edwardhartnett
2077729abc removed base_pe functions from dispatch table 2019-08-15 06:51:06 -06:00
edwardhartnett
80542c0cdd fixed comment to trigger CI 2019-08-04 08:03:53 -06:00
edwardhartnett
7ce322a6f1 now have libhdf5 use nc4_file_list_add() 2019-08-02 09:29:18 -06:00
edwardhartnett
181f260a20 adding, and starting to use nc4_file_list_add() 2019-08-02 09:14:35 -06:00
edwardhartnett
49dcb48c25 clean up 2019-08-01 14:39:45 -06:00
edwardhartnett
170c5b0901 removed NC from open in dispatch table 2019-08-01 14:30:20 -06:00
edwardhartnett
ef9b459977 now libhdf4 layer also looks up the NC on open 2019-08-01 11:40:36 -06:00
Ed Hartnett
76d6b55eff moved call to nc4_rec_grp_del() to inside nc4_nc4f_list_del() 2019-07-16 16:29:06 -06:00
Ed Hartnett
b8e50c9254 moved freeing of allvars, alldims, alltypes lists to nc4_nc4f_list_del 2019-07-16 16:16:11 -06:00
Ed Hartnett
e9666f7333 moved free(h5) intonc4_nc4f_list_del 2019-07-16 16:07:21 -06:00
Ed Hartnett
d840c1864c removed unused prototype 2019-07-16 16:02:08 -06:00
Ed Hartnett
3310e67567 hdf4file.c cleanup 2019-07-16 14:54:42 -06:00
Ed Hartnett
bdf2711333 cleaned up handling of nc_file->dispatchdata in hdf4 file code 2019-07-16 14:48:26 -06:00
Ed Hartnett
bc09b7b8f5 documentation update 2019-07-04 10:23:11 -06:00
Ed Hartnett
758aac0634 documentation update 2019-07-04 10:22:13 -06:00
Ed Hartnett
cf0ab1c504 documentation update 2019-07-04 10:21:06 -06:00
Ed Hartnett
985ed35166 documentation update 2019-07-04 10:20:37 -06:00
Ed Hartnett
d7e46e8c5f documentation update 2019-07-04 10:16:21 -06:00
Ed Hartnett
9a7a7e28d1 documentation update 2019-07-04 10:15:32 -06:00
Ed Hartnett
b965daf649 documentation update 2019-07-04 10:14:28 -06:00
Ed Hartnett
0ccb3d1c5e documentation update 2019-07-04 10:13:54 -06:00
Ed Hartnett
5a4948faec documentation update 2019-07-04 10:13:15 -06:00
Ed Hartnett
0cfe7ef8b2 removed unneeded reference to int_ncid in the HDF4 code 2019-07-04 10:11:42 -06:00
Dennis Heimbigner
6934aa2e8b Thread safety: step 1: cleanup
re: https://github.com/Unidata/netcdf-c/issues/1373 (partial)

* Mark some global constants be const to indicate to make them easier to track.
* Hide direct access to the ncrc_globalstate behind a function call.
* Convert dispatch tables to constants (except the user defined ones)
  This has some consequences in terms of function arguments needing to be marked
  as const also.
* Remove some no longer needed global fields
* Aggregate all the globals in nclog.c
* Uniformly replace nc_sizevector{0,1} with NC_coord_{zero,one}
* Uniformly replace nc_ptrdffvector1 with NC_stride_one
* Remove some obsolete code
2019-03-30 14:06:20 -06:00
Ed Hartnett
bb9a7dee53 cleanup of whitespace in HDF4 directory 2019-02-19 05:17:23 -07:00
Ed Hartnett
f9a9100d9a cleanup of whitespace in HDF4 directory 2019-02-19 05:17:00 -07:00
Ed Hartnett
2dd6ce54b8 cleanup of whitespace in HDF4 directory 2019-02-19 05:16:14 -07:00
Ed Hartnett
6f1d0b8191 fixed HDF4 2019-01-22 10:04:50 -07:00
Ed Hartnett
6416abe887 fixed HDF4 abort warning 2019-01-02 05:58:54 -07:00
Ed Hartnett
f7e6746c7c fixed hDF4 memory freeing of format specific var info 2018-11-13 07:47:24 -07:00
Wei-keng Liao
a7c08c3a49 add a missed update to NC_HDF4_open 2018-09-23 01:36:50 -05:00
Wei-keng Liao
0ed70756cc Ignore flags NC_MPIIO and NC_MPIPOSIX. 2018-09-22 20:22:34 -05:00
Ed Hartnett
8885c75ade removing unneeded lookups 2018-08-22 06:08:19 -06:00
Ed Hartnett
d8c1a6209a removed unneeded lookup function 2018-08-21 11:54:06 -06:00
Ed Hartnett
697f033823 renamed NC_HDF5_FILE_INFO to NC_FILE_INFO 2018-06-22 07:08:09 -06:00
Ed Hartnett
6b90169278 switching to att_not_read 2018-06-19 05:05:44 -06:00
Ed Hartnett
dad70cf880 more lazy atts 2018-06-19 04:54:03 -06:00
Ed Hartnett
19ae8b47d1 took out src_long and dest_long again. Getting good at it! ;-) 2018-06-16 05:33:04 -06:00
Ed Hartnett
037a3cb58c reverting 2018-06-09 06:17:52 -06:00
Ed Hartnett
09366bf43b removed longs from conver_type again 2018-06-09 06:14:14 -06:00
Ward Fisher
1d789d9d39 Additional reconciliation 2018-06-08 15:50:39 -06:00
Ed Hartnett
9a2782b56c got long working with master 2018-06-05 14:40:49 -06:00
Ed Hartnett
b2e85ce8a1
Merge branch 'master' into ejh_hdf4_cleanup 2018-04-30 17:53:19 -06:00
luz.paz
b4d0fe651a Follow-up trivial typos 2018-04-26 23:04:01 -04:00
Ed Hartnett
d5326551dd removed unused file 2018-04-23 05:05:40 -06:00
Ed Hartnett
a49bc92e36 removed unused HDF4 code 2018-04-23 04:09:54 -06:00
Ed Hartnett
96154d9303 added merged HDF4 changes 2018-04-04 14:11:44 -06:00