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326 Commits

Author SHA1 Message Date
Ward Fisher
399a43ae89 Updated nc_test to respect USE_CDF5 2017-09-18 13:24:11 -06:00
Ward Fisher
d2cdc4cb5a Working on getting cdf5 tests running. 2017-09-15 18:00:28 -06:00
Ward Fisher
c740f47895 Corrected for no CDF5 support. 2017-09-15 17:29:10 -06:00
Ward Fisher
e006ea5e07 Fixed a simple mistake in test organization. 2017-08-11 18:36:44 -06:00
Ward Fisher
85e9aaf368 Wiring in a large test to check against a regression for the issue described in https://github.com/Unidata/netcdf-c/pull/457 2017-08-11 18:18:11 -06:00
Wei-keng Liao
7992242a39 Call nc_close, which calls MPI_File_close, to avoid MPI wraning messages on MPI objects are still allocated. 2017-08-08 16:54:38 -05:00
Greg Sjaardema
1503013e33 Eliminate NC_MAX_VARS|DIMS|ATTRS limits 2017-07-20 09:32:29 -06:00
Ward Fisher
e4f81a1611 Fixed issue on 32-bit systems. 2017-07-05 14:57:12 -06:00
Ward Fisher
12d224eeef Corrected an issue in support of https://github.com/Unidata/netcdf-c/issues/420 2017-06-09 12:46:37 -06:00
Ward Fisher
b73c81697c Removed a line in configure.ac that is potentially redundant and throws an error on some systems. In support of https://github.com/Unidata/netcdf-c/issues/413 2017-06-08 12:38:43 -06:00
Ward Fisher
4097dd9826 Change to address issue reported in https://github.com/Unidata/netcdf-c/issues/413 2017-06-08 11:55:00 -06:00
Ward Fisher
f8c7df70b3 Corrected an issue where run_diskless2.sh was not properly configured. 2017-05-10 16:55:47 -06:00
Ward Fisher
051bd3b81a Merge branch 'master' into open_check_vlens 2017-05-05 17:02:36 -06:00
Ward Fisher
ce20f3bf53 Corrected a build issue on windows for tst_diskless5, and updated release notes. 2017-05-04 10:58:18 -06:00
Dennis Heimbigner
455f3b9976 typo 2017-05-03 10:19:35 -06:00
Dennis Heimbigner
5a0c7abb8f Add testcase 2017-05-03 09:58:49 -06:00
Ward Fisher
8dddd222a3 Merged master, DAP4 support into branch. 2017-04-19 09:29:35 -06:00
Ward Fisher
b5b99cbebb Merge branch 'master' into ghpull-375 2017-04-05 16:24:55 -06:00
Dennis Heimbigner
6d8809100f Fix pull request https://github.com/Unidata/netcdf-c/pull/374 (dap4.dmh) 
1. When running under windows (as opposed to cygwin)
   we need to make sure to not user /cygdrive/ file paths.
   This was ocurring in libdap4/d4read.c, but may occur
   elsewhere.
2. Shell scripts in the git repo are not being checked-out
   with the executable mode set. Had core.filemode set to false.
   Was a major hassle to fix.
 2017-04-03 21:39:44 -06:00
Wei-keng Liao
1af2643fb8 rename macro ERR to ERR_CHK, as ERR is already defined in err_macros.h 2017-04-03 22:17:36 -05:00
Dennis Heimbigner
5f15c9e777 1) master merge 2)fix uname -o problem 2017-03-30 16:21:31 -06:00
Ward Fisher
45e30475f6 Updated release notes to reflect new return, modified test to check for proper expected return value. 2017-03-29 15:47:48 -06:00
Ward Fisher
92ef49d4ed Updated release notes. 2017-03-29 15:43:45 -06:00
Ward Fisher
16169a27af Wiring in test in support of https://github.com/Unidata/netcdf-c/issues/388 2017-03-29 15:25:38 -06:00
Ward Fisher
e5fb53f996 Restored line that was accidentally removed. 2017-03-29 11:38:59 -06:00
Ward Fisher
6b036cfc28 Adding test in support of https://github.com/Unidata/netcdf-c/issues/384 2017-03-29 11:23:47 -06:00
Ward Fisher
2bf5f09bcc Corrected an issue on *nix systems 2017-03-16 15:13:38 -06:00
Ward Fisher
80d2b914a1 Updates for Visual-Studio-based builds. 2017-03-16 14:34:33 -06:00
Ward Fisher
53c018a3f6 Attempting to fix visual studio errors in support of https://github.com/Unidata/netcdf-c/pull/375 2017-03-13 15:12:47 -06:00
Wei-keng Liao
01cf5f4339 silence warnings from Travis CI 2017-03-11 12:51:04 -06:00
Wei-keng Liao
af258dcec9 update for arm to use char as much as possible, instead of signed char 2017-03-10 12:00:59 -06:00
Ward Fisher
8e3790f7ce Merged master. 2017-03-09 12:53:28 -07:00
Dennis Heimbigner
3db4f013bf Primary change: add dap4 support 
Specific changes:
1. Add dap4 code: libdap4 and dap4_test.
   Note that until the d4ts server problem is solved, dap4 is turned off.
2. Modify various files to support dap4 flags:
	configure.ac, Makefile.am, CMakeLists.txt, etc.
3. Add nc_test/test_common.sh. This centralizes
   the handling of the locations of various
   things in the build tree: e.g. where is
   ncgen.exe located. See nc_test/test_common.sh
   for details.
4. Modify .sh files to use test_common.sh
5. Obsolete separate oc2 by moving it to be part of
   netcdf-c. This means replacing code with netcdf-c
   equivalents.
5. Add --with-testserver to configure.ac to allow
   override of the servers to be used for --enable-dap-remote-tests.
6. There were multiple versions of nctypealignment code. Try to
   centralize in libdispatch/doffset.c and include/ncoffsets.h
7. Add a unit test for the ncuri code because of its complexity.
8. Move the findserver code out of libdispatch and into
   a separate, self contained program in ncdap_test and dap4_test.
9. Move the dispatch header files (nc{3,4}dispatch.h) to
   .../include because they are now shared by modules.
10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts.
11. Make use of MREMAP if available
12. Misc. minor changes e.g.
	- #include <config.h> -> #include "config.h"
	- Add some no-install headers to /include
	- extern -> EXTERNL and vice versa as needed
	- misc header cleanup
	- clean up checking for misc. unix vs microsoft functions
13. Change copyright decls in some files to point to LICENSE file.
14. Add notes to RELEASENOTES.md
 2017-03-08 17:01:10 -07:00
Dennis Heimbigner
47daf33074 Resolves Github issue https://github.com/Unidata/netcdf-c/issues/349. 
Update utf8proc.[ch] to use the version now
maintained by the Julia Language project
(https://github.com/JuliaLang/utf8proc/blob/master/LICENSE.md).
The license for the previous version was
unacceptable for the Debian and Ubuntu release
systems. The new version both updates the code
and addresses the license issue.

It turns out that the utf8proc software we are using
was turned over to the Julia Language developers
and the license terms changed to allow modification.
(https://github.com/JuliaLang/utf8proc/blob/master/LICENSE.md).

So the fix here is as follows:
1. Wrap the library with a fixed interface: libdispatch/dutf8.c
   and include/ncutf8.h.
2. Replace the existing utf8proc code with the new version
   from https://github.com/JuliaLang/utf8proc.
3. Add a couple more test cases: nc_test/tst_utf8_validate.c
   and nc_test_utf8_phrases.c.  If/when I can find a usable
   normalization test, I will incorporate that later.
 2017-02-16 14:27:54 -07:00
Ward Fisher
9db19d75ec Found what appears to be the issue in testing attributes. The code was casting a negative double to a char (unsigned, on ARM), resulting in a value of 0 instead of the expected value of -128. 2017-02-14 16:53:38 -07:00
Ward Fisher
047760bbf1 Changing data types to get tests to run on ARM. Once all tests are running (albeit as signed char instead of unsigned char) we can worry about modifying the tests so that what we want to test is what's being tested. 2017-02-14 16:48:52 -07:00
Ward Fisher
50155b0170 More debugging in support of https://github.com/Unidata/netcdf-c/issues/319. 2017-02-14 12:34:31 -07:00
Ward Fisher
e100aaf6b0 We cannot assume char is signed or unsigned. 2017-02-07 14:20:59 -07:00
Ward Fisher
7a0e61f97c Corrected first test failure in nc_test. Cannot assume MAX_CHAR is 255, as char is not universally unsigned by default. 2017-02-07 11:41:55 -07:00
Wei-keng Liao
340f0d2a91 Classic Format Specification says: Header padding uses null (\x00) bytes 2016-11-28 11:54:16 -06:00
Wei-keng Liao
ab73a57fca Merge branch 'master' into issue258 2016-11-25 10:49:03 -06:00
Ward Fisher
b4785f4081 Housekeeping on large file tests. 2016-11-18 15:48:58 -07:00
Wei-keng Liao
33865dfbf8 skip tests that are incompatible with the earlier PnetCDF versions, eg. 1.6.0, 1.6.1 and 1.7.0 2016-11-18 01:29:59 -06:00
Wei-keng Liao
38e40a14d2 sync with PnetCDF nc_test files (add a few more testings) 2016-11-14 11:19:23 -06:00
Wei-keng Liao
2081ae7099 add configure option --enable-relax-coord-bound for issue #243 2016-11-12 23:58:09 -06:00
Wei-keng Liao
e357696c8d sync with PnetCDF on use of NC_ENULLSTART and NC_ENULLCOUNT 2016-11-04 17:29:40 -05:00
Wei-keng Liao
06c1f744e8 silence gcc compile warnings when using -Wconversion 2016-10-30 00:44:28 -05:00
Wei-keng Liao
04e5ff4c74 sync with master branch 2016-10-28 11:54:25 -05:00
Wei-keng Liao
309303e34e remove argument fillv for get APIs as we use default fill values for fillv 2016-10-28 10:34:51 -05:00
Wei-keng Liao
f19e4ce81e sync m4 files with PnetCDF 2016-10-25 15:11:16 -05:00
Wei-keng Liao
87fab92924 match type of a subroutine argument 2016-10-25 13:28:38 -05:00
Wei-keng Liao
d78ec898e5 SCHAR_MAX is 127, not 128 2016-10-25 13:21:54 -05:00
Ward Fisher
b37784ed7f Corrected parallel tests in support of https://github.com/Unidata/netcdf-c/issues.321 2016-10-24 22:45:15 +00:00
Ward Fisher
1c11fc5d59 More refactoring, pushing to avoid accidental loss. 2016-10-21 19:24:40 +00:00
Ward Fisher
157af11bc2 Refactoring tests to separate out error macros from tests, in support of fixing http://github.com/Unidata/netcdf-c/issues/321 2016-10-21 17:17:39 +00:00
Wei-keng Liao
08afcf1f88 add missing tests from the original netCDF 2016-10-13 13:25:16 -05:00
Wei-keng Liao
6737a38a24 add back a fix for NC_EDIMSIZE 2016-10-13 03:26:08 -05:00
Wei-keng Liao
beac085c7d more updates due to renaming test_read.c and test_write.c to m4 files 2016-10-13 02:56:50 -05:00
Wei-keng Liao
ac86d8c9fb Update CMakeLists.txt due to test_read.c and test_write.c have been renamed to m4 files 2016-10-13 02:25:21 -05:00
Wei-keng Liao
3a93d84a67 borrow some m4 files from PnetCDF 2016-10-13 02:17:31 -05:00
Wei-keng Liao
fbbed1f9ff move ncid check to the first and add varid check before name check 2016-10-13 02:12:26 -05:00
Wei-keng Liao
c4a148e136 type cast (char) before comparison 2016-10-10 00:20:23 -05:00
Wei-keng Liao
835ff7cd1e make test subroutine return nok, add comments on X_CHAR_MIN and X_CHAR_MAX 2016-10-09 22:18:46 -05:00
Wei-keng Liao
9cf01256cf revise sunroutine equal, add equal2 for matched ityep and xtype APIs, and add nc_err_code_name 2016-10-09 22:16:09 -05:00
Wei-keng Liao
ecc851b21c borrow PnetCDF test_put.m4 2016-10-09 22:13:40 -05:00
Wei-keng Liao
aacb3c2e11 borrow PnetCDF test_get.m4 2016-10-09 22:13:30 -05:00
Wei-keng Liao
0eff6cb128 add CDF format checking in hash4 to exclude the NC_BYTE-to-uchar exception fro CDF-5 format 2016-10-08 13:48:22 -05:00
Wei-keng Liao
e1643f9fd8 handle special case when calling _uchar APIs to access NC_BYTE attributes/variables in CDF-2 file format (no NC_ERANGE check) 2016-10-06 00:50:52 -05:00
Wei-keng Liao
f8813bbd04 handle special case when calling _uchar APIs to access NC_BYTE attributes in CDF-2 file format 2016-10-06 00:49:13 -05:00
Ward Fisher
486f69522c Merged utility-based tests fix into cmake-based builds. 2016-08-31 15:48:10 -06:00
Ward Fisher
b2e4b74e3a Restricted tests from running when they require the utilities but the utilities were not built, in autoconf-based tests. See https://github.com/Unidata/netcdf-c/issues/313 for more information. 2016-08-31 15:38:59 -06:00
Greg Sjaardema
2bfd984fad Update testing -- not error if start==size 2016-07-21 09:30:18 -06:00
Dennis Heimbigner
11a259ad86 Add provenance info for netcdf-4 files. 
This consists of a persistent attribute named
_NCProperties plus two computed attributes
_IsNetcdf4 and _SuperblockVersion.
See the 'Provenance Attributes' section
of docs/attribute_conventions.md for details.
 2016-05-07 14:32:07 -06:00
Ward Fisher
baec7157a3 Clean up lingering 'make distcheck' errors. 2016-04-12 09:48:21 -06:00
Ward Fisher
33e43e15f1 Merge branch 'master' into gh240 in preparation for final merge. 2016-04-05 20:28:03 +00:00
Ward Fisher
d8592ef380 Updated tests now that things are passing. Added some true failures to test for as well. 2016-04-05 20:25:49 +00:00
Ward Fisher
829036ab7f Corrected an issue with out-of-source-tree builds, in support of https://github.com/Unidata/netcdf-c/issues/242 2016-04-04 15:27:22 -06:00
Ward Fisher
aa6a3969b7 Included expected failures for netcdf-3 files and nc_inq_type. 2016-03-30 15:03:20 -06:00
Ward Fisher
7adad14ec7 Further fleshing out the test. 2016-03-28 19:19:21 +00:00
Ward Fisher
5a5295406d Updated test. 2016-03-28 19:12:11 +00:00
Ward Fisher
a369ddb0bb Fleshed out test for nc_inq_type 2016-03-28 18:49:56 +00:00
Ward Fisher
93641eb2d6 Refactored types test. 2016-03-28 18:29:47 +00:00
Ward Fisher
69911758a9 Made a small change to ifFail to accomodate PGI compilers. 2016-03-23 16:48:15 -06:00
Ward Fisher
79c021712a Removed generated tests from source control. Ensuring generated files are regenerated if m4 is present. 2016-01-22 12:03:28 -07:00
Ward Fisher
2d25f9b915 Updated CMakeLists to explicitely look for static or shared hdf5 libraries. Required as part of hdf5 1.8.16, and is documented in https://github.com/Unidata/netcdf-c/issues/186 2016-01-07 14:11:44 -07:00
Ward Fisher
023356ba9b Fixed typos. 2015-12-29 12:39:35 -07:00
Ward Fisher
19cfaa9308 A bit of cleaning up for the merge into master. 2015-12-29 11:12:50 -07:00
Ward Fisher
cee769cc1e Converting CHAR_IS_SIGNED over to autoconf-style __CHAR_UNSIGNED__ 2015-12-28 21:27:27 +00:00
Ward Fisher
90541e6c17 Cleanup: Removing temporary tests. 2015-12-28 21:17:25 +00:00
Ward Fisher
8e4a8f4225 Chasing down implicit char cast which rounds a value to 0 when a negative value is cast to a different unsigned type. 2015-12-28 20:24:56 +00:00
Ward Fisher
bd92caa176 More changes towards fixing the issue where the file is read incorrectly. 2015-12-28 17:36:05 +00:00
Ward Fisher
925da14d2a Some additional errors reared up after fixing the main frustrating one. Working towards fixing them. 2015-12-24 01:37:42 +00:00
Ward Fisher
d10688a6fb Issue identified, see https://github.com/Unidata/netcdf-c/issues/159 for specifics. Also see http://stackoverflow.com/questions/10541200/is-the-behaviour-of-casting-a-negative-double-to-unsigned-int-defined-in-the-c-s for some background info that lead me to the fix. 2015-12-23 22:08:13 +00:00
Ward Fisher
3e2a1cc540 Tweaking the test a little bit 2015-12-23 21:29:30 +00:00
Ward Fisher
8e3c7febf3 More tweaks during debugging. 2015-12-23 21:21:57 +00:00
Ward Fisher
bd6f4909cf Captured a conversion error. 2015-12-23 21:17:53 +00:00
Ward Fisher
4d9cb910ca Closer to replicating I think. 2015-12-23 13:00:16 -07:00
Ward Fisher
f83ec50bd0 I think we have this recreated as we would expect. 2015-12-23 19:40:05 +00:00
Ward Fisher
a0de63bcce Additional tweaking of the test. 2015-12-22 23:08:20 +00:00
Ward Fisher
7bf5012481 Duplicating the issue we've observed by forcing an overflow error. 2015-12-22 23:04:16 +00:00