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Author SHA1 Message Date
Wei-keng Liao
142cd5b5ca as NC_MPIIO has deprecated, move checking for flag conflict to nc_create_par 2019-02-26 11:01:35 -06:00
Ward Fisher
4372b260ae
Merge pull request #1339 from Unidata/endiantest.dmh 
Fix nc_test4/tst_filter.sh for big endian
 2019-02-25 10:20:22 -07:00
Dennis Heimbigner
4c1ed0144b Fix nc_test4/tst_filter.sh for big endian 
re: issue https://github.com/Unidata/netcdf-c/issues/1338

Changes:

1. nc_test4/tst_filter.sh + nc_test4/ref_filteredvv.cdl --
   properly suppress _Endianness attribute
2. fix some warnings
 2019-02-24 22:20:01 -07:00
Ward Fisher
3ea1ea7b01
Merge pull request #1328 from NetCDF-World-Domination-Council/ejh_whitespace 
whitespace changes only
 2019-02-21 14:04:04 -07:00
Ward Fisher
af2e115712
Merge pull request #1322 from Unidata/v4.6.2.1-dev.wif 
Preparing Maintenance Release
 2019-02-20 17:14:58 -07:00
Ward Fisher
404f87b8c2 Turned of filterparser test when building static library. 2019-02-20 15:11:06 -07:00
Ward Fisher
288c9a7c52 Update to fix an environmental issue in ncconfigure.h 2019-02-19 14:42:34 -07:00
Ed Hartnett
a22e895c10 cleanup of whitespace in include directory 2019-02-19 06:10:30 -07:00
Ed Hartnett
58a801c91a cleanup of whitespace in include directory 2019-02-19 06:09:10 -07:00
Ed Hartnett
298e8dc737 cleanup of whitespace in libsrc4 directory 2019-02-19 05:56:40 -07:00
Ed Hartnett
7c8f3a7ee6 cleanup of whitespace in libsrc4 directory 2019-02-19 05:56:30 -07:00
Ed Hartnett
ae313334b5 cleanup of whitespace in libsrc4 directory 2019-02-19 05:56:22 -07:00
Ed Hartnett
cb107c2b60 cleanup of whitespace in libsrc4 directory 2019-02-19 05:56:04 -07:00
Ed Hartnett
be6a58772e cleanup of whitespace in libsrc4 directory 2019-02-19 05:55:36 -07:00
Ed Hartnett
af91209981 cleanup of whitespace in HDF5 directory 2019-02-19 05:55:22 -07:00
Ed Hartnett
cfa8e3808f cleanup of whitespace in HDF5 directory 2019-02-19 05:19:37 -07:00
Ed Hartnett
b1d30a0f67 cleanup of whitespace in HDF5 directory 2019-02-19 05:18:53 -07:00
Ed Hartnett
c771443e43 cleanup of whitespace in HDF5 directory 2019-02-19 05:18:25 -07:00
Ed Hartnett
8b1f5a8fad cleanup of whitespace in HDF5 directory 2019-02-19 05:18:02 -07:00
Ed Hartnett
384a6f1303 cleanup of whitespace in HDF5 directory 2019-02-19 05:17:47 -07:00
Ed Hartnett
bb9a7dee53 cleanup of whitespace in HDF4 directory 2019-02-19 05:17:23 -07:00
Ed Hartnett
f9a9100d9a cleanup of whitespace in HDF4 directory 2019-02-19 05:17:00 -07:00
Ed Hartnett
2dd6ce54b8 cleanup of whitespace in HDF4 directory 2019-02-19 05:16:14 -07:00
Ward Fisher
9f55a5376d Corrected typo. 2019-02-16 00:10:52 -07:00
Ward Fisher
6830cfa4f2 Restored EXTERNL definition to netcdf_mem.h in support of https://github.com/Unidata/netcdf-c/issues/1148 2019-02-15 17:17:06 -07:00
Ward Fisher
f767148aad Updated mainpage.dox to make the netCDF-Fortran documentation link more obvious. 2019-02-15 16:44:45 -07:00
Ward Fisher
496a9cb185 Merge branch 'doc-update.wif' into v4.6.2.1-dev.wif 2019-02-15 16:41:30 -07:00
Ward Fisher
e69432704a Corrected cmake error on OSX in plugins compilation. 2019-02-15 16:07:22 -07:00
Ward Fisher
0098f4c9f1 Merge branch 'master' into v4.6.2.1-dev.wif 2019-02-15 15:46:14 -07:00
Ward Fisher
05dadede2b
Merge pull request #1321 from Unidata/dap4endianfix2.dmh 
Fix additional big-endian machine error in dap4.
 2019-02-15 15:45:48 -07:00
Ward Fisher
c75794b40a Updated Release notes for impending v4.6.2.1 release. 2019-02-15 15:31:24 -07:00
Ward Fisher
53ba2ff316
Merge pull request #1311 from Unidata/filterexpr.dmh 
Extend nccopy -F option syntax.
 2019-02-15 15:16:25 -07:00
Ward Fisher
1efe8333ac
Merge pull request #1308 from NetCDF-World-Domination-Council/ejh_more_rename_woes_3 
Fix bug which changed varids after var rename
 2019-02-15 15:16:04 -07:00
Ward Fisher
802209dcfe
Merge pull request #1318 from Unidata/rename-aggregation.wif 
Combination of the remaining rename-related PR's
 2019-02-15 15:15:46 -07:00
Ward Fisher
0092599cc7
Merge pull request #1319 from Unidata/dap2groups.dmh 
Fix handling of '/' characters in names in DAP2.
 2019-02-15 15:15:26 -07:00
Dennis Heimbigner
ddd324c1f0 Fix LGTM complaint 2019-02-15 12:40:30 -07:00
Dennis Heimbigner
d13619b3e1 Fix additional big-endian machine error in dap4. 
Follow on to PR: https://github.com/Unidata/netcdf-c/pull/1302
 2019-02-15 11:36:29 -07:00
Dennis Heimbigner
c59d5ce205 Fix handling of '/' characters in names in DAP2. 
re: https://github.com/Unidata/thredds/issues/1224
[note that this is an issue in thredds, but the fix is in netcdf-c]

A thredds server can encode a netcdf-4 file into DAP2
by flattening names to include the containing group path,
where the group names are separated by '/'.

But the '/' is prohibited in netcdf names even if escaped
(a decision before my time).

So, if the netcdf-c/libdap2 code encounters a DAP2 name with '/'
characters, the '/' characters are converted to the string
%2f. Unfortunately, there is a glitch, namely that converting
the leading '/' produces a name that is still illegal. This PR
modifies the code to just drop the leading '/' character.
 2019-02-14 20:25:40 -07:00
Ed Hartnett
c61afffae3
Merge branch 'master' into ejh_more_rename_woes_3 2019-02-14 14:07:33 -07:00
Ward Fisher
30c2ca2413
Merge pull request #1312 from Unidata/urlauth.dmh 
URL with username+pwd in url is not working.
 2019-02-14 13:27:20 -07:00
Ward Fisher
acbc4a2e41
Merge branch 'master' into filterexpr.dmh 2019-02-13 16:55:21 -07:00
Ward Fisher
df03fd3240 Merge branch 'ejh_more_rename_woes_3' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into rename-aggregation.wif 2019-02-13 16:37:50 -07:00
Ward Fisher
e9aeafe0fd
Merge branch 'master' into ejh_more_rename_woes_3 2019-02-13 16:37:28 -07:00
Ward Fisher
4a06f24813
Merge branch 'master' into ejh_more_rename_woes_2 2019-02-13 16:35:54 -07:00
Ward Fisher
6c3b7a0077
Merge branch 'master' into urlauth.dmh 2019-02-13 16:32:38 -07:00
Ward Fisher
29d2643f8e
Merge pull request #1317 from Unidata/fillhack.dmh 
Add hack to deal with DAP2 signed byte conversion.
 2019-02-13 16:07:19 -07:00
Dennis Heimbigner
724128ad3b Add hack to deal with DAP2 signed byte hack. 
re: issue https://github.com/Unidata/netcdf-c/issues/1316

The DAP2 data model does not have a signed byte type,
but netcdf-3 does have (only) a signed byte type.
So, when converting a netcdf-3 signed byte typed variable to
a DAP2 unsigned byte, the following actions are taken by thredds:
1. The variable type is marked as DAP2 (unsigned) byte.
2. A special attribute, "_Unsigned=false" is set for the variable
3. The corresponding "_FillValue" attribute, if any, is up-converted
   to the DAP2 Int16 type in order to hold, with sign, any signed byte
   fill value.

On the netcdf-c side, this looks like a fillvalue type mismatch and causes
an error. Instead, the netcdf-c dap2 conversion code needs to recognize
this hack and undo it locally.

So this change looks for the above case, and if found, then it properly
converts the _FillValue type to netcdf-3 signed byte.

Since DAP2 supports both signed and unsigned integers of sizes 16 and 32 bits,
this should be the only hack needed (famous last words).

It may later be desirable for the thredds DAP2 converter to modify its
behavior as well.
 2019-02-13 14:36:14 -07:00
Ed Hartnett
f937ed7b25
Merge branch 'master' into ejh_more_rename_woes_2 2019-02-12 15:05:34 -07:00
Ward Fisher
e32e0b1eb2
Merge branch 'master' into filterexpr.dmh 2019-02-12 09:48:03 -07:00
Ward Fisher
ec06e9d4c9
Merge branch 'master' into ejh_more_rename_woes_3 2019-02-12 09:47:34 -07:00