Commit Graph

553 Commits

Author SHA1 Message Date
Ed Hartnett
0e4dfa6dd7 merged master, these changes on queue to be submitted as PR 2018-06-06 09:16:59 -06:00
Ed Hartnett
011e85cea4 merge ejh_par_tests 2018-05-30 05:06:25 -06:00
Ed Hartnett
b03277caea
Merge branch 'master' into ejh_streq 2018-05-17 04:26:59 -06:00
Ward Fisher
a8c4c0aa68 Merge remote-tracking branch 'origin/cleanncgen.dmh' into small-pr-aggregate.wif 2018-05-16 14:32:10 -06:00
Ward Fisher
3f83cc4926 Merge branch 'master' into inmem2.dmh 2018-05-16 14:24:19 -06:00
Ed Hartnett
37cae16b38 added parallel testing for string type 2018-05-16 02:26:13 -06:00
Ed Hartnett
1da187a5fd
Merge branch 'master' into ejh_streq 2018-05-16 01:52:25 -06:00
Ward Fisher
d54e133e8d Merge branch 'master' into appveyor.wif 2018-05-15 12:01:54 -06:00
Ed Hartnett
4adc7e5cc6 fixed comment 2018-05-15 08:24:27 -06:00
Ed Hartnett
d167786796 moved irish rover ncdump test to netcdf-4 test script 2018-05-15 08:13:25 -06:00
Ed Hartnett
b8ad15b6ae tests for ncdump issue with irish rover 2018-05-15 08:09:52 -06:00
Ward Fisher
9bea284949 Fixed a shell script error on vs15 2018-05-14 14:37:07 -06:00
Ward Fisher
27ca221bdb Merge branch 'master' into appveyor.wif 2018-05-14 13:19:17 -06:00
Ed Hartnett
0c0d066927 changed macro STREQ to NCSTREQ to avoid name collusion with HDF4 library 2018-05-12 08:55:51 -06:00
Dennis Heimbigner
3c7ffcc6d1 Fix https://github.com/Unidata/netcdf-c/issues/963
Fix https://github.com/Unidata/netcdf-c/issues/962

1. remove the --disable-diskless option since it is no
   longer needed. Similarly for CMakeLists.txt.
2. Fixed nc4files.c where BAIL and return were mixed
   leading to situation where cleanup code was not
   being invoked. This probably occurs elsewhere,
   but I did not find any specifically.
2018-05-11 15:30:19 -06:00
luz.paz
74fbacdb82 Misc. source comment typos
Some are user-facing. Found via `codespell` and through the downstream FreeCAD.
2018-04-26 23:04:01 -04:00
Ward Fisher
28ce3e4a8c Added fenceposts around bash scripts, excluding the bash.exe included with Windows 10 (for now) when searching to see if bash is available. 2018-04-26 14:38:56 -06:00
Thomas Braun
3af477a926 netcdf-c: Make cmake pass a windows cmd prompt
add_sh_test only creates the test if HAVE_BASH is TRUE.
Therefore we can only call SET_TESTS_PROPERTIES on the created test if
HAVE_BASH is equally true.
2018-04-26 14:43:27 +02:00
Ward Fisher
ee7bbb2320 Debugging pull request for OSX. 2018-04-20 14:40:28 -06:00
Ward Fisher
76af2109e3 Corrected an issue in fileinfo script. 2018-04-17 14:23:52 -06:00
Ward Fisher
913b4a3961
Merge branch 'master' into index.dmh 2018-03-26 14:22:46 -06:00
Dennis Heimbigner
1246dd189b merge master 2018-03-20 21:50:58 -06:00
Dennis Heimbigner
e6e3583e30 Merge branch 'master' into ncdaptestsclean.dmh 2018-03-20 21:37:35 -06:00
Dennis Heimbigner
05d078a8b0 The ncdap_tests were a mess, so I decided to clean them up
to remove cruft and to remove unused site tests
and make the tests somewhat more understandable.

Also did a fix to libdispatch/dwinpath to convert
relative paths to absolute paths. This will, I hope,
take care of some windows path problems when using
$srcdir in shell scripts.
2018-03-20 21:31:31 -06:00
Ward Fisher
1c148a580b Corrected double declaration. 2018-03-20 14:41:21 -06:00
Ward Fisher
36c4b7947d Merge branch 'master' into newhash1.dmh 2018-03-20 11:20:14 -06:00
Dennis Heimbigner
25f062528b This completes (for now) the refactoring of libsrc4.
The file docs/indexing.dox tries to provide design
information for the refactoring.

The primary change is to replace all walking of linked
lists with the use of the NCindex data structure.
Ncindex is a combination of a hash table (for name-based
lookup) and a vector (for walking the elements in the index).
Additionally, global vectors are added to NC_HDF5_FILE_INFO_T
to support direct mapping of an e.g. dimid to the NC_DIM_INFO_T
object. These global vectors exist for dimensions, types, and groups
because they have globally unique id numbers.

WARNING:
1. since libsrc4 and libsrchdf4 share code, there are also
   changes in libsrchdf4.
2. Any outstanding pull requests that change libsrc4 or libhdf4
   are likely to cause conflicts with this code.
3. The original reason for doing this was for performance improvements,
   but as noted elsewhere, this may not be significant because
   the meta-data read performance apparently is being dominated
   by the hdf5 library because we do bulk meta-data reading rather
   than lazy reading.
2018-03-16 11:46:18 -06:00
Dennis Heimbigner
dd4e71c150 1. Solve issue raised on netcdfgroup mailing list:
https://www.unidata.ucar.edu/mailing_lists/archives/netcdfgroup/2018/msg00020.html
See docs/filters.md for a detailed description of the solution.
Basically we add nccopy flags "-F none" and "-F <varname>:none"
to suppress output compression as desired.

2. Add tests to nc_test4/tst_filter.sh to test out the solution.
2018-03-02 16:55:58 -07:00
Dennis Heimbigner
8cb1fc4cfe This is the second step in refactoring the libsrc4 code.
The first was branch newhash0.dmh.

As with newhash0.dmh, these changes should be transparent.
2018-02-24 20:36:24 -07:00
Dennis Heimbigner
3e47f5f300 Rebuilt the filter parameter handling code to use a common
parser everywhere.
2018-01-23 16:00:11 -07:00
Dennis Heimbigner
22ebecab23 Use an explicit can_apply function for filters 2018-01-19 18:45:56 -07:00
Dennis Heimbigner
6420d46491 oops, forgot to condition filter code on netcdf-4 2018-01-19 12:25:03 -07:00
Dennis Heimbigner
991c4c6d16 Add some extra nccopy filter debug output 2018-01-19 12:06:02 -07:00
Dennis Heimbigner
e723d7dfed Merge branch 'plugins.dmh' of https://github.com/Unidata/netcdf-c into plugins.dmh 2018-01-19 10:58:46 -07:00
Ward Fisher
0f5fc7222b
Merge branch 'master' into plugins.dmh 2018-01-18 15:46:50 -07:00
Ward Fisher
45ad829238 Added a new logging option, -L, to nccopy. 2018-01-18 16:12:29 -06:00
Dennis Heimbigner
8d8dff9a2a Add some temporary debugging output 2018-01-17 19:47:54 -07:00
Ed Hartnett
cf92670687 added guards for header files that needed them 2018-01-17 09:20:20 -07:00
Dennis Heimbigner
99fccab359 1. Keep up to date by merging master
2. Fixed plugin building (nc_test4/hdf5plugins)
   to be done properly by cmake and automake.
4. Duplicated part of the nc_test4 filter test code
   in examples/C

An incomplete and untested set of hooks exist
for OS-X in nc_test4/findplugins.in. They need testing.
2018-01-16 11:00:09 -07:00
Ward Fisher
69a418c27d Merge branch 'cmake-fix' of https://github.com/nehaljwani/netcdf-c into gh692 2018-01-02 13:24:13 -07:00
Ward Fisher
98dd736a40 Oops. Corrected error properly, should check before I commit. 2017-12-18 14:57:25 -07:00
Ward Fisher
1703e33c61 Removed 'function' keyword, non-portable on ARM. 2017-12-18 14:56:32 -07:00
Ward Fisher
84a77be0c4 Added explicit error checking to tst_netcdf4.sh 2017-12-18 15:26:33 -06:00
Ward Fisher
58972c8cc0 Working out issues on Windows. 2017-12-12 10:44:22 -06:00
Ward Fisher
77cca75977
Merge branch 'master' into ejh_more_tests 2017-12-07 20:24:43 -07:00
Ward Fisher
24c6b27dfe Configuring a test so that it won't fail during parallel testing. 2017-12-06 15:00:21 -07:00
Ward Fisher
e8471c9eeb
Merge branch 'master' into ejh_more_tests 2017-12-06 13:21:32 -07:00
Ed Hartnett
4de61e21f2 more docs, more cleaning 2017-12-04 12:21:14 -07:00
Ward Fisher
6166f86bfc Flagged tst_nccopy4 to not run parallel when using cmake. 2017-12-01 15:19:42 -07:00
Ward Fisher
72052689c6 More reshuffling. 2017-12-01 15:04:13 -07:00