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196 Commits

Author SHA1 Message Date
Ward Fisher
6096f6b43b Merged changes from CMake branch. 
Addressed a handful of memory leaks
reported by Coverity.
 2013-03-14 22:49:21 +00:00
Dennis Heimbigner
9eaac2a595 Apply Wei-Keng's fix 
for JIRA issue NCF-241.
This is only temporary
until I can make pnetcdf
operate as a separate dispatch table.

Also, fix nc_test4/tst_pnetcdf
to open with nc_open_par;
this is necessary because a pnetcdf
created file cannot be opened
as a netcdf classic file.
 2013-03-13 17:34:47 +00:00
Ward Fisher
57084316de Merging changes from netCDF branch. 2013-02-28 21:50:55 +00:00
Ward Fisher
ddf3c31bb0 Corrected a handful of syntax issues in CMake config files, 
probably introduced more.  

Added CMake-related files to Makefile.am files for inclusion
when creating a distribution package.
 2013-02-20 23:28:28 +00:00
Ward Fisher
5703c0979e Corrected an issue I introduced which broke a particular parallel test. 2013-02-12 21:27:52 +00:00
Russ Rew
7a3f42974c Fix bug NCF-222, scalar non-coordinate variables with same name as dimensions. (Previous commit was just test, this is really the fix. 2013-02-04 15:49:52 +00:00
Russ Rew
fab1c8675c Fix NCF-217, a bug depending on order of calls to netCDF-4 functions 2013-02-01 17:38:26 +00:00
Ward Fisher
71a30406f7 Corrected 2 windows-specific errors when using Visual Studio: 
1. In nc4hdf.c, had a variable declaration located such
that Visual Studio complained and threw an error. Moved
to head of function.

2. Visual Studio was complaining about variable declarations
being made after OCVERIFY/OCDEREF macros.
 2013-01-29 23:33:59 +00:00
Ward Fisher
c20baac22b Removed dependency on NC_MAX_DIMS from libsrc4 files. 
Improved HDF4 suport in CMakeLists.txt
Remaining files were not changed, but svn picks up
'property changes' on them.
 2013-01-28 19:58:06 +00:00
Ward Fisher
19dcece866 Merged latest trunk, addressed NC_MAX_DIMS dependence in libsrc4 2013-01-28 18:31:02 +00:00
Ward Fisher
fae7d90194 Removing reliance on NC_MAX_VAR_DIMS 2013-01-22 20:59:39 +00:00
Ward Fisher
23647a6910 2013-01-22 20:37:23 +00:00
Ward Fisher
1a77185d5e 2013-01-22 19:47:46 +00:00
Dennis Heimbigner
0d8c0b9276 more pnetcdf fixes 2013-01-18 02:25:12 +00:00
Ward Fisher
426c1508a3 2013-01-16 21:14:29 +00:00
Ward Fisher
91188cea7a Merging CMake branch into trunk. Changes include: 
CMake related changes in CMakeLists.txt files,
cmake_config.h.in. Other changes relate to 
Windows-specific issues, and changes made
when regenerating generated source files.
 2013-01-15 22:43:09 +00:00
Ward Fisher
4a6b93f3ab A test from netcdf-cmake branch made its way into the trunk; 
corrected.
 2013-01-15 19:48:12 +00:00
Russ Rew
22b411a17c Merged in pnetcdf fixes from Greg Sjardema, to make set_fill_mode work 
with parallel-netcdf, to fully implement parallel-netcdf support for
other functions, and to prevent a hang in hdf5 from an eary return in
an nc4_put_vara() call.  Also fixed an nccopy bug when
nc_inq_var_deflate() returns defalate_level of 0, but says the variable
is deflated.
 2013-01-15 03:46:46 +00:00
Ward Fisher
21523c8582 Merged changes from cmake branch. oc2 changes are just 
'file property' changes, not sure what exactly.
 2012-12-20 21:50:45 +00:00
Dennis Heimbigner
adbe2ba5f1 extend r2822 to work when logging is enabled 2012-12-18 19:44:39 +00:00
Ward Fisher
7b91248723 Merged changes from netcdf-branch. 
o Changed variable names 'typeid' to 'typeid1' to avoid a namespace conflict
in visual studio.
o Cleaned up a handful of warnings in Visual Studio.
o Addressed a few Coverity-discovered issuesl
o Made changes to CMake-based builds.
 2012-12-13 22:09:41 +00:00
Dennis Heimbigner
635a03f2f7 It turns out that when I converted the code 
to keep the NC structure pure and independent
of any file format, I neglected to check with
--enable-hdf4. These changes appear to fix that
problem.
 2012-12-13 18:22:11 +00:00
Dennis Heimbigner
5f2eb8afbf Fix a number of potential problems by changing calls to nc_XXX to NC3/4_XXX 2012-12-12 20:05:06 +00:00
Ward Fisher
cf0d0b54f2 Merged latest changes from cmake branch. Fixed a test file, and changed a deallocation call to avoid throwing an error on Windows related to cross-dll memory-management. 2012-12-07 23:21:27 +00:00
Ward Fisher
85382f21bc Fixed a handful of issues identified by Coverity. 2012-12-06 00:06:32 +00:00
Ward Fisher
ff631c8156 Merged latest changes from cmake branch. 
o Improved CMake support.
o Cmake module compatibility (netcdf-config*.cmake.in).
 2012-11-19 21:43:12 +00:00
Russ Rew
8e98e3727d Fixed bug NCF-144 (ncdump of variables with multiple unlimited 
dimensions).  Added comprehensive tests that include variables with
lots of combinations of 0 through 4 fixed and unlimited dimensions.
 2012-11-16 21:37:43 +00:00
Ward Fisher
afa67452f6 Took some time to address a handful of errors identified by Coverity. 
Primarily focused on memory errors falling into a couple different types:

1) Static overrun errors.
2) Dereference uninitialized memory errors.

make distcheck works after applying these fixes, and coverity no longer sees an issue, so hopefully they are properly resolved.
 2012-11-14 18:24:45 +00:00
Ward Fisher
45f77090a1 Addressed a handful of minor 'fixed-length buffer overrun' 
errors identified by Coverity.  The fixes involved replacing calls
to strcpy, strcat with strncpy, strncat.
 2012-10-31 21:31:47 +00:00
Ward Fisher
7a226dd3f1 Merging the win_netcdf branch into the trunk. 2012-09-27 22:50:41 +00:00
Ward Fisher
f2d2ddf435 2012-09-26 20:30:19 +00:00
Ward Fisher
98675a8047 Merged with latest trunk. 2012-09-26 17:08:23 +00:00
Russ Rew
a92c7c98a0 Fixed DOS line endings in source file. 
Fixed minor memory leak found by Coverity.
Fixed misleading error message in configure.
 2012-09-25 21:48:14 +00:00
Ward Fisher
e55d002dbc Merged Dennis' changes from trunk. 2012-09-06 21:15:37 +00:00
Dennis Heimbigner
5ca78309cc The effect of this change is to make the struct NC structure 
contain as little file-type specific info as possible.  It
modifies especially libsrc so that all of the netcdf-3 data
that used to be in struct NC is now kept in a separate chunk
of data pointed to by the struct NC. This makes all of
current protocols consistent: netcdf-3, netcdf-4, and dap.
 2012-09-06 19:44:03 +00:00
Ward Fisher
7ef113df5f 2012-08-24 18:24:58 +00:00
Russ Rew
eda91aa9cf Enhanced netcdf-4 to be able to deal with optional user area data 
block at the front of some HDF5 files (NCF-28).  Also fixed some minor
typos in doxygen blocks in netcdf.h.
 2012-08-22 21:53:06 +00:00
Ward Fisher
235fc6bb13 Merged latest trunk into branch 2012-08-22 19:52:24 +00:00
Russ Rew
24a1cd0718 Fix test of H5Tget_size() return so it can actually detect an error. 
Remove some dead code.  Fix declaration of X_INT_MIN in tests.h.
 2012-08-22 14:57:30 +00:00
Ward Fisher
e8453be1e5 Merged from trunk into branch 2012-08-20 18:30:04 +00:00
Russ Rew
8d53da4826 Fixed bug "adding a bad _FillValue" bug (NCF-190). Fixed minor bugs 
reported by static analysis, including memory leak in ncdump, missing
size_t cast for chunk cache.  Fixed various doc problems, including
byte vs. char issues, missing NC_UBYTE in type list, needed link to
"Building with Windows" page.
 2012-08-16 18:31:48 +00:00
Ward Fisher
14619ec4c4 2012-08-09 18:40:41 +00:00
Ward Fisher
0607b62375 Added coverage test flags to CMakeLists.txt files. 2012-08-09 17:07:41 +00:00
Ward Fisher
05cde40552 2012-08-08 22:31:28 +00:00
Ward Fisher
0ee2fba307 Expanded ctest functionality. 2012-08-07 20:21:44 +00:00
Ward Fisher
0d90326575 Integrated latest changes to trunk, added preliminary CPack support. 2012-08-02 22:56:57 +00:00
Ward Fisher
7163dc49d8 Changed a few dangling checks for H5F_LIBVER_18 to H5F_LIBVER_LATEST. These were causing compile failures on some versions of Ubuntu (10.10, 11.??) 2012-08-01 20:57:23 +00:00
Ward Fisher
1af2b768b0 Merged changes from trunk (mainly Dennis' oc2 inclusion). 2012-07-31 22:04:25 +00:00
Dennis Heimbigner
42999f4c7c move from oc1.0 to oc2.0; create new dir oc2 2012-07-31 20:34:13 +00:00
Ward Fisher
71075cee2e Additional changes in support of CMake. 2012-07-18 21:12:58 +00:00