Commit Graph

17 Commits

Author SHA1 Message Date
Ward Fisher
31dee0c4da
Revert "Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries"" 2020-08-17 19:15:47 -06:00
Ward Fisher
16c27ca13f
Revert "Fix nczarr-experimental: improve build support, disengage hdf5 vs netcdf4 flags, and find AWS libraries" 2020-08-17 15:51:01 -06:00
Dennis Heimbigner
d85bb6fe20 The big change for this commit is complete the
disengagement of enable-netcdf4 from enable-hdf5.
That is, with the advent of nczarr, it is possible
to turn off hdf5 but still need netcdf-4 enabled
because nczarr uses libsrc4, but not libhdf5.
This change involves a bunch of things:
1. Modify configure.ac and CMakelist to make enable_hdf5
   control if hdf5 support is provided. For back compatibility,
   disable-netcdf4 is treated as disable-hdf5. But internally,
   netcdf4 support is controlled only by the enabling of formats
   that require it.
2. In support of #1, modify .travis.yml to use enable/disable-hdf5
   instead of enable/disable-netcdf4.
3. test_common.in is modified to track selected features,
   including enable-hdf5 and enable-s3-tests. This is used in
   selected tests that mix netcdf-3 and netcdf4 tests.
4. The conflation of USE_HDF5 and USE_NETCDF4 is common in
   code, tests, and build files, so all of those had to be weeded out.
5. It turns out that some of the NC4_dim functions really are HDF5 specific,
   but are not treated as such. So they are moved from nc4dim.c to
   hdf5dim.c or hdf5dispatch.c
6. Some generic functions in libhdf5 can be (and were) moved to libsrc4.
2020-08-12 15:42:50 -06:00
Dennis Heimbigner
44d0dcaad2 Add support for multiple filters per variable.
re: https://github.com/Unidata/netcdf-c/issues/1584

Support has been added for multiple filters per variable.  This
affects a number of components in netcdf. The new APIs are
documented in NUG/filters.md.

The primary changes are:
* A set of new functions are provided (see __include/netcdf_filter.h__).
    - Obtain a list of the filters associated with a variable
    - Obtain the parameters for a specific filter.
* The existing __nc_inq_var_filter__ function now returns info
  about the first defined filter.
* The utilities (ncgen, ncdump, and nccopy) now support
  an extended format for specifying a sequence of filters.
  The general form is __<filter>|<filter>..._.
* The ncdump **_Filter** attribute now dumps a list of all the
  filters associated with a variable using the above new format.
* Filter specifications can now use a filter name instead of number
  for filters known to the netcdf library, which in turn is taken
  from the HDF5 filter registration page.
* New errors are defined: NC_EFILTER and NC_ENOFILTER. The latter
  is returned if an attempt is made to access an unknown filter.
* Internally, the dispatch table has been extended to add a function
  to handle all of the filter functions.
* New, filter-related, tests were added to nc_test4.
* A new plugin was added to the plugins directory to help with testing.

Notes:
1. The shuffle and fletcher32 filters are not part of the multifilter system.

Misc. changes:
1. A debug module was added to libhdf5 to help catch error locations.
2020-02-16 12:59:33 -07:00
Ed Hartnett
c771443e43 cleanup of whitespace in HDF5 directory 2019-02-19 05:18:25 -07:00
Greg Sjaardema
1ab53924cb
Tests on equalp are always true
If `equalp` is NULL, then the function returns early, so all subsequent tests on `equalp` are not needed.
2019-01-04 17:39:48 -07:00
Ed Hartnett
d29feb53de have switched location of hdf_native_typeid 2018-11-20 10:29:02 -07:00
Ed Hartnett
5104262f6b changing types 2018-11-20 08:00:48 -07:00
Ed Hartnett
8ae5ebf6bc remove unneeded params from function 2018-11-16 08:26:09 -07:00
Ed Hartnett
59307c405d removing unneeded function nc4_rec_find_nc_type 2018-08-22 06:29:44 -06:00
Ed Hartnett
2dd0ac6319 clean up 2018-07-16 04:50:15 -06:00
Ed Hartnett
786c5a8f2e moved hdf5 specific header stuff to hdf5internal.h 2018-07-12 07:05:21 -06:00
Ed Hartnett
697f033823 renamed NC_HDF5_FILE_INFO to NC_FILE_INFO 2018-06-22 07:08:09 -06:00
Ed Hartnett
97a580eda7 fixed documentation merge 2018-06-12 07:01:50 -06:00
Ed Hartnett
fb570522bc merged in ejh_fix_user_type 2018-06-12 06:49:40 -06:00
Ed Hartnett
d26df3fb27 comment cleanup 2018-05-24 14:43:00 -06:00
Ed Hartnett
f2cb4678ee moving HDF5 functions to libhdf5 2018-05-24 14:27:16 -06:00