Ward Fisher
8771d0bdf4
Merge pull request #1582 from NOAA-GSD/ejh_parallel_zlib
...
Allow user to turn on zlib, shuffle, and/or fletcher32 filters with parallel I/O for HDF5-1.10.2+
2020-01-13 16:06:51 -07:00
Dennis Heimbigner
748d26c114
Add support for CURLOPT_CONNECTTIMEOUT
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I see that there is no way to set CURLOPT_CONNECTTIMEOUT,
but there is support for CURLOPT_TIMEOUT.
So, accept the line 'HTTP.CONNECTTIMEOUT'
in .rc file to allow user to set CURLOPT_CONNECTTIMEOUT.
2020-01-09 11:48:04 -07:00
Dennis Heimbigner
f587654670
Make the dap4 code resistant to various server errors.
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Some versions of some servers are returning malformed responses.
Make the library either handle them or gracefully fail.
The three server errors "fixed" here are as follows.
1. The attribute _NCProperties sometimes has a trailing nul character
in its value. Soln is to elide the nul(s).
2. Sometimes a DAP response has no data part, only a DMR.
Soln is to detect and return an error code instead of crashing.
3. Sometimes a server returns a redirection, but our current
openmagic() function was not following the redirect. Soln
is to follow redirects.
Also because of #2 , I am temporarily making --disable-dap-remote-tests
be the default.
2020-01-08 15:18:31 -07:00
Ward Fisher
438119dd69
Merge pull request #1560 from NOAA-GSD/ejh_cache_docs
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increase default cache size for netCDF-4/HDF5 files, also improve cache docs and add benchmarking program
2020-01-07 11:46:30 -07:00
Ward Fisher
fb062f4406
Correct a cmake linking error discovered when working in a mips qemu environment.
2020-01-02 12:57:59 -05:00
Edward Hartnett
995cfdad96
merged master
2019-12-20 11:16:11 -07:00
Edward Hartnett
accb83a8b5
even more documentation updates
2019-12-20 07:20:02 -07:00
Edward Hartnett
8681b0d241
more documentaiton
2019-12-20 07:10:13 -07:00
Edward Hartnett
2136063d69
better documentation
2019-12-20 07:05:23 -07:00
Edward Hartnett
6952eb779b
documentation updates
2019-12-20 05:36:09 -07:00
Ward Fisher
6c75e97764
Merge pull request #1570 from NOAA-GSD/ejh_compact
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enable compact storage for netcdf-4 vars
2019-12-19 16:47:05 -07:00
James Sharpe
c5d1e4bdec
Call find_package(MPI) to locate MPI paths and link to libdispatch if required
2019-12-18 16:48:40 +00:00
Edward Hartnett
19fef32a9e
better documentation for compact storage
2019-12-16 09:52:59 -07:00
Edward Hartnett
e43a5d952c
updated docs for NC_COMPACT
2019-12-04 09:16:33 -07:00
Edward Hartnett
64d821b568
removed non-relaxed coord bounds from test code
2019-11-26 06:20:34 -07:00
Edward Hartnett
5ab7bf7796
now always relax!
2019-11-26 05:36:16 -07:00
Edward Hartnett
2682ffd68d
improved docs for cache functions, added libhdf5/hdf5cache.c to Doxyfile.in, added benchmark program for cache settings
2019-11-25 16:33:04 -07:00
Ward Fisher
af8f9ad2cf
Merge pull request #1523 from NetCDF-World-Domination-Council/ejh_udf
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User-defined formats must come first in NC_infermodel, plus test
2019-11-15 16:40:07 -07:00
Ward Fisher
e4003be502
Merge pull request #1515 from NetCDF-World-Domination-Council/ejh_att_docs
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update for attribute documentation
2019-11-15 16:39:46 -07:00
Ward Fisher
2462cda15e
Merge pull request #1525 from NetCDF-World-Domination-Council/ejh_anon_dims
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If HDF5 dataset has multiple anonymous dimensions of the same size, assume they are different dimensions
2019-11-14 16:58:24 -07:00
Constantine Khrulev
91d3a89bdd
Fix NC_coord_zero indexing in NCDISPATCH_initialize()
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Fixes #1518 .
2019-11-14 08:26:33 -09:00
edwardhartnett
b9f57b2b5f
now UDF mode flags take priority over NC_NETCDF4
2019-11-13 12:13:33 -07:00
edwardhartnett
0bbe91e438
udf must take priority in NC_infermodel
2019-11-13 12:07:33 -07:00
edwardhartnett
c76dae1c5d
added anchors for reading_attributes and writing_attributes, and refs to them, also changed order of files in Doxygen.in
2019-11-08 05:19:51 -07:00
edwardhartnett
09fe16c847
cleanup
2019-11-08 04:47:57 -07:00
edwardhartnett
8b2630913a
adding doxygen docs for every att function
2019-11-08 04:45:45 -07:00
edwardhartnett
7919e2c052
fixing documentation for attribute put functions
2019-11-07 12:19:18 -07:00
edwardhartnett
42df9b09e5
fixing documentation for attribute put functions
2019-11-07 11:58:41 -07:00
edwardhartnett
3ecef5e7f0
fixing documentation for attribute get functions
2019-11-07 11:47:27 -07:00
edwardhartnett
209da6563c
greater distinction between netCDF-4 and classic formats in attribute documentation
2019-11-07 11:32:57 -07:00
edwardhartnett
f46679c8cc
cleanup and minor fixes for attribute rename/delete functions
2019-11-07 09:53:43 -07:00
edwardhartnett
ed8ef60855
cleanup and minor fixes for attribute inq functions
2019-11-07 09:46:23 -07:00
edwardhartnett
d961f7b76e
cleanup of documentation format in attributes write code
2019-11-07 09:31:04 -07:00
edwardhartnett
837dccd217
changed format to match other docs, fixed file documentation
2019-11-07 07:09:54 -07:00
Ward Fisher
f77b96b066
Fixed a potential null/garbage free.
2019-10-24 16:37:52 -06:00
Ward Fisher
36ccecf053
Addressing a potential null argument to strlen
2019-10-24 14:28:39 -06:00
Greg Sjaardema
5ecad63c6a
Remove incorrect comment
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The comment states that prefix must end in '/', but the '/' is added in the function itself, so the prefix should *not* end in '/' and the comment is incorrect.
2019-10-16 08:40:58 -06:00
Ward Fisher
d001ec8590
Removing a problematic const causing issues on OSX.
2019-10-09 17:18:48 -06:00
Dennis Heimbigner
f1506d552e
Change (again), and hopefully simplify, the file model inference algorithm.
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* For URL paths, the new approach essentially centralizes all information
in the URL into the "#mode=" fragment key and uses that value
to determine the dispatcher for (most) URLs.
* The new approach has the following steps:
1. canonicalize the path if it is a URL.
2. use the mode= fragment key to determine the dispatcher
3. if dispatcher still not determined, then use the mode flags
argument to nc_open/nc_create to determine the dispatcher.
4. if the path points to something readable, attempt to read the
magic number at the front, and use that to determine the dispatcher.
this case may override all previous cases.
* Misc changes.
1. Update documentation
2. Moved some unit tests from libdispatch to unit_test directory.
3. Fixed use of wrong #ifdef macro in test_filter_reg.c
[I think this may fix an previously reported esupport query].
2019-09-29 12:59:28 -06:00
Ward Fisher
e7cc899264
Merge branch 'ejh_try2' of https://github.com/NetCDF-World-Domination-Council/netcdf-c into gh1487.wif
2019-09-20 14:04:56 -06:00
Greg Sjaardema
56c0d5cf8a
Spelling fixes
2019-09-18 08:03:01 -06:00
edwardhartnett
2cd228bcd4
porting changes from other PR
2019-09-16 11:28:18 -06:00
edwardhartnett
e4ef7b1a65
more unit tests, this time for nc4internal.c
2019-08-21 04:46:00 -06:00
Ed Hartnett
bce3fa6169
Merge branch 'master' into ejh_next
2019-08-16 03:42:32 -06:00
edwardhartnett
94f1a89a40
final removal
2019-08-15 07:05:10 -06:00
edwardhartnett
c7c2892de5
clean up
2019-08-15 06:53:57 -06:00
edwardhartnett
2077729abc
removed base_pe functions from dispatch table
2019-08-15 06:51:06 -06:00
edwardhartnett
60f436e7ee
starting to remove obsolete _CRAYMPP macros
2019-08-14 06:13:45 -06:00
edwardhartnett
dce6f32a76
documentation
2019-08-13 14:57:43 -06:00
edwardhartnett
f007523826
fixed missing dependency in unit_test Makefile.am
2019-08-13 11:06:06 -06:00
