Commit Graph

22 Commits

Author SHA1 Message Date
Dennis Heimbigner
0c59e13bf7 Master merge, conflict resolution, cleanup 2019-02-24 16:54:13 -07:00
Dennis Heimbigner
bf2746b8ea Provide byte-range reading of remote datasets
re: issue https://github.com/Unidata/netcdf-c/issues/1251

Assume that you have the URL to a remote dataset
which is a normal netcdf-3 or netcdf-4 file.

This PR allows the netcdf-c to read that dataset's
contents as a netcdf file using HTTP byte ranges
if the remote server supports byte-range access.

Originally, this PR was set up to access Amazon S3 objects,
but it can also access other remote datasets such as those
provided by a Thredds server via the HTTPServer access protocol.
It may also work for other kinds of servers.

Note that this is not intended as a true production
capability because, as is known, this kind of access to
can be quite slow. In addition, the byte-range IO drivers
do not currently do any sort of optimization or caching.

An additional goal here is to gain some experience with
the Amazon S3 REST protocol.

This architecture and its use documented in
the file docs/byterange.dox.

There are currently two test cases:

1. nc_test/tst_s3raw.c - this does a simple open, check format, close cycle
   for a remote netcdf-3 file and a remote netcdf-4 file.
2. nc_test/test_s3raw.sh - this uses ncdump to investigate some remote
   datasets.

This PR also incorporates significantly changed model inference code
(see the superceded PR https://github.com/Unidata/netcdf-c/pull/1259).

1. It centralizes the code that infers the dispatcher.
2. It adds support for byte-range URLs

Other changes:

1. NC_HDF5_finalize was not being properly called by nc_finalize().
2. Fix minor bug in ncgen3.l
3. fix memory leak in nc4info.c
4. add code to walk the .daprc triples and to replace protocol=
   fragment tag with a more general mode= tag.

Final Note:
Th inference code is still way too complicated. We need to move
to the validfile() model used by netcdf Java, where each
dispatcher is asked if it can process the file. This decentralizes
the inference code. This will be done after all the major new
dispatchers (PIO, Zarr, etc) have been implemented.
2019-01-01 18:27:36 -07:00
Ward Fisher
5be0126920 More standardizing of the copyright stanza. 2018-12-06 14:13:56 -07:00
Wei-keng Liao
48da78e133 Use PnetCDF instead of parallel-netcdf to avoid confusion with
parallel netcdf4. Also, update PnetCDF web page.
2018-09-17 17:18:48 -05:00
Ward Fisher
90d664b9ec Merge branch 'has_parallel4' of https://github.com/wkliao/netcdf-c into pr-aggregation.wif 2018-07-31 11:32:54 -06:00
Wei-keng Liao
d0cb241cfe add NC_HAS_PARALLEL4 to netcdf_meta.h.in 2018-07-14 18:03:42 -05:00
Wei-keng Liao
c8f3a647b6 add NC_RELAX_COORD_BOUND to netcdf_meta.h.in 2018-07-13 16:32:43 -05:00
luz.paz
74fbacdb82 Misc. source comment typos
Some are user-facing. Found via `codespell` and through the downstream FreeCAD.
2018-04-26 23:04:01 -04:00
Ward Fisher
7df45badce Added ERANGE_FILL information to netcdf_meta.h 2018-01-25 12:46:46 -07:00
Ward Fisher
b1ad6b8c2f Updating netcdf_meta.h to include CDF5. 2017-09-26 11:32:12 -06:00
Dennis Heimbigner
3db4f013bf Primary change: add dap4 support
Specific changes:
1. Add dap4 code: libdap4 and dap4_test.
   Note that until the d4ts server problem is solved, dap4 is turned off.
2. Modify various files to support dap4 flags:
	configure.ac, Makefile.am, CMakeLists.txt, etc.
3. Add nc_test/test_common.sh. This centralizes
   the handling of the locations of various
   things in the build tree: e.g. where is
   ncgen.exe located. See nc_test/test_common.sh
   for details.
4. Modify .sh files to use test_common.sh
5. Obsolete separate oc2 by moving it to be part of
   netcdf-c. This means replacing code with netcdf-c
   equivalents.
5. Add --with-testserver to configure.ac to allow
   override of the servers to be used for --enable-dap-remote-tests.
6. There were multiple versions of nctypealignment code. Try to
   centralize in libdispatch/doffset.c and include/ncoffsets.h
7. Add a unit test for the ncuri code because of its complexity.
8. Move the findserver code out of libdispatch and into
   a separate, self contained program in ncdap_test and dap4_test.
9. Move the dispatch header files (nc{3,4}dispatch.h) to
   .../include because they are now shared by modules.
10. Revamp the handling of TOPSRCDIR and TOPBUILDDIR for shell scripts.
11. Make use of MREMAP if available
12. Misc. minor changes e.g.
	- #include <config.h> -> #include "config.h"
	- Add some no-install headers to /include
	- extern -> EXTERNL and vice versa as needed
	- misc header cleanup
	- clean up checking for misc. unix vs microsoft functions
13. Change copyright decls in some files to point to LICENSE file.
14. Add notes to RELEASENOTES.md
2017-03-08 17:01:10 -07:00
Greg Sjaardema
2d3278c58b Update comment
If pnetcdf support is enabled, then  NC_HAS_PARALLEL is defined to 1 even if HDF5 is not enabled.  Fix comment to make this clearer.
2016-02-10 15:07:19 -07:00
Ward Fisher
4826fd73ce Tightened up formatting for generated netcdf_meta.h file. 2014-09-26 13:57:50 -06:00
Ward Fisher
36ca7ca972 Moved previously defined macros out of meta.h and back into netcdf.h, so that we don't break the just-released netcdf-fortran release. 2014-09-24 10:22:40 -06:00
Ward Fisher
4958670b0c Added a new .gitignore specific to include/.
Added netcdf_meta.h to user documentation generated by doxygen.
2014-09-18 15:05:08 -06:00
Ward Fisher
6f4a92f1b6 Updated copyright information for netcdf.h, netcdf_meta.h template. 2014-09-11 15:30:22 -06:00
Ward Fisher
302b8003b7 Added definition of NC_HAVE_META_H to netcdf.h.
Moved NC_HAVE_INQ_FORMAT_EXTENDED, NC_HAVE_RENAME_GRP
to netcdf_meta.h.
2014-09-11 15:19:02 -06:00
Ward Fisher
028d564344 Have finished with autotools-based netcdf_meta.h template. Need to redo cmake-based template to match behavior.
Modified cmake to use the same netcdf_meta template as autotools.

Removed trace of old cmake template file.
2014-09-11 12:32:55 -06:00
Ward Fisher
2368e0ed05 Work in progress. 2014-09-10 13:35:27 -06:00
Ward Fisher
206ebc514c Infrastructure for generating a meta header file dynamically at configure time. 2014-09-10 13:35:27 -06:00
Ward Fisher
bb8077af30 Working woards automatically-generated meta information file. 2014-09-10 13:35:27 -06:00
Ward Fisher
2ddb91205d Initial version of template header file. 2014-09-10 13:35:26 -06:00